Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Reverse (-)

5381069 .. 5382939

Gene Structure 1871 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGGCTTAATTGTGGATGATGATAACGATGGAGAAGTTTTGATTCCGCCGCCGAATTTTTCAATGGTAGAAGATGAAATTTACCGATCTGGGTTTCCTGAGCTGGAGAATTTCGGATTCTTATCAACCCTAAATCTTCGATCCATCATTTATCTGTGTCCTGAGCCATACCCTGAGGACAATCTCAAGTCTCTTGCATCCAACAACATTAAGCTTTTCCAGTTCGGGATTGAAGGCAAAACGGATCCTCCAACTCCTATGCCAAAGGATACAGTGTTGAGTGCTCTTAGAGTACTAGTTGATGTTCGAAATCATCCAATTCTTATCCACTGTAAGCGCGGAAAGCATAGGACAGGTTGTCTTGTGGGATGCTTGAGGAAAGTGCAGAACTGGTGCTTGTCATCGGTTCTCGAGGAATACCAGAAGTGTGCGGGTTTGAAATGGAGACAAAGAGATTTAAGGTTCATTGAGGATTTCGATGTGCTCAGATTGAAGCAATGTCTATACAGCATCATATATCAGTACAATGGGTATGGTCTCAAGAGAAGAAAGTTGCTGTATCAAGAAGAGAATGTTGTTCAAGAACAGCAAAAACCTCAAGCCACCAAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

204

Amino Acids

23.6

Weight (kDa)

7.54

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	14 - 161	1.4e-54	Tyrosine phosphatase family
PTP-NADK	PF22741	31 - 129	2.2e-07	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	339
AciI	CCGC	4 cut(s)	47, 50, 339, 431
AclWI	GGATC	3 cut(s)	135, 239, 252
AcsI	RAATTY	3 cut(s)	55, 78, 109
AfaI	GTAC	2 cut(s)	294, 524
AgsI	TTSAA	5 cut(s)	63, 233, 439, 493, 581
AhdI	GACNNNNNGTC	1 cut(s)	357
AhlI	ACTAGT	1 cut(s)	295
AluBI	AGCT	2 cut(s)	103, 214
AluI	AGCT	2 cut(s)	103, 214
Alw21I	GWGCWC	2 cut(s)	286, 486
Alw26I	GTCTC	3 cut(s)	195, 439, 542
AlwI	GGATC	3 cut(s)	135, 239, 252
Ama87I	CYCGRG	1 cut(s)	410
ApoI	RAATTY	3 cut(s)	55, 78, 109
AspLEI	GCGC	1 cut(s)	339
AsuII	TTCGAA	1 cut(s)	307
AvaI	CYCGRG	1 cut(s)	410
AxyI	CCTNAGG	1 cut(s)	174
BamHI	GGATCC	1 cut(s)	244
Bbv12I	GWGCWC	2 cut(s)	286, 486
BccI	CCATC	2 cut(s)	23, 152
BciVI	GTATCC	1 cut(s)	262
BcoDI	GTCTC	3 cut(s)	195, 439, 542
BcuI	ACTAGT	1 cut(s)	295
BfaI	CTAG	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	50
BlsI	GCNGC	1 cut(s)	51
BmcAI	AGTACT	1 cut(s)	294
BmeRI	GACNNNNNGTC	1 cut(s)	357
BmeT110I	CYCGRG	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	246
BmsI	GCATC	3 cut(s)	206, 359, 519
BpmI	CTGGAG	1 cut(s)	125
Bpu10I	CCTNAGC	2 cut(s)	99, 162
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	4 cut(s)	170, 394, 524, 582
BsaBI	GATNNNNATC	1 cut(s)	121
BsaI	GGTCTC	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bse1I	ACTGG	2 cut(s)	220, 395
Bse21I	CCTNAGG	1 cut(s)	174
Bse3DI	GCAATG	1 cut(s)	503
Bse8I	GATNNNNATC	1 cut(s)	121
BseGI	GGATG	4 cut(s)	22, 197, 313, 374
BseJI	GATNNNNATC	1 cut(s)	121
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	4 cut(s)	90, 153, 165, 499
BseNI	ACTGG	2 cut(s)	220, 395
BsgI	GTGCAG	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	339
BsiHKAI	GWGCWC	2 cut(s)	286, 486
BsiHKCI	CYCGRG	1 cut(s)	410
BsmAI	GTCTC	3 cut(s)	195, 439, 542
Bso31I	GGTCTC	1 cut(s)	542
BsoBI	CYCGRG	1 cut(s)	410
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	286, 486
Bsp143I	GATC	3 cut(s)	86, 140, 244
BspACI	CCGC	4 cut(s)	47, 50, 339, 431
BspCNI	CTCAG	4 cut(s)	91, 154, 166, 498
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	3 cut(s)	135, 239, 252
BspT104I	TTCGAA	1 cut(s)	307
BspTNI	GGTCTC	1 cut(s)	542
BsrDI	GCAATG	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	220, 395
BssMI	GATC	3 cut(s)	86, 140, 244
Bst4CI	ACNGT	2 cut(s)	274, 332
Bst6I	CTCTTC	1 cut(s)	561
BstBI	TTCGAA	1 cut(s)	307
BstDEI	CTNAG	5 cut(s)	99, 162, 174, 287, 485
BstF5I	GGATG	4 cut(s)	22, 197, 313, 374
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	3 cut(s)	89, 143, 247
BstMAI	GTCTC	3 cut(s)	195, 439, 542
BstMBI	GATC	3 cut(s)	86, 140, 244
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	339
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
Bsu36I	CCTNAGG	1 cut(s)	174
BsuI	GTATCC	1 cut(s)	262
BtsCI	GGATG	4 cut(s)	22, 197, 313, 374
BtsIMutI	CAGTG	2 cut(s)	279, 328
CfoI	GCGC	1 cut(s)	339
Csp6I	GTAC	2 cut(s)	293, 523
CviJI	RGCY	5 cut(s)	6, 103, 166, 214, 602
CviKI_1	RGCY	5 cut(s)	6, 103, 166, 214, 602
CviQI	GTAC	2 cut(s)	293, 523
DdeI	CTNAG	5 cut(s)	99, 162, 174, 287, 485
DpnI	GATC	3 cut(s)	88, 142, 246
DpnII	GATC	3 cut(s)	86, 140, 244
DriI	GACNNNNNGTC	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	561
Eam1105I	GACNNNNNGTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	561
EciI	GGCGGA	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	542
Eco81I	CCTNAGG	1 cut(s)	174
Eco88I	CYCGRG	1 cut(s)	410
FaiI	YATR	7 cut(s)	169, 260, 348, 505, 515, 517, 534
FauI	CCCGC	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	50
FokI	GGATG	4 cut(s)	29, 184, 300, 381
Fsp4HI	GCNGC	1 cut(s)	50
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	125
HhaI	GCGC	1 cut(s)	339
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	212
HinfI	GANTC	2 cut(s)	43, 117
Hpy188I	TCNGA	2 cut(s)	116, 488
Hpy188III	TCNNGA	7 cut(s)	98, 161, 226, 410, 541, 563, 581
HpyAV	CCTTC	1 cut(s)	227
HpyCH4III	ACNGT	2 cut(s)	274, 332
HpyCH4V	TGCA	2 cut(s)	197, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	5 cut(s)	99, 162, 174, 287, 485
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	3 cut(s)	86, 140, 244
LpnPI	CCDG	9 cut(s)	75, 89, 111, 174, 186, 233, 339, 376, 434
LweI	GCATC	3 cut(s)	206, 359, 519
MaeI	CTAG	1 cut(s)	296
MalI	GATC	3 cut(s)	88, 142, 246
MboI	GATC	3 cut(s)	86, 140, 244
MboII	GAAGA	4 cut(s)	83, 128, 558, 578
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	2 cut(s)	286, 486
MluCI	AATT	5 cut(s)	9, 55, 78, 109, 318
MmeI	TCCRAC	2 cut(s)	225, 275
MnlI	CCTC	6 cut(s)	169, 258, 369, 406, 463, 606
MseI	TTAA	3 cut(s)	8, 210, 458
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	1 cut(s)	343
NdeII	GATC	3 cut(s)	86, 140, 244
NlaIV	GGNNCC	1 cut(s)	246
NspV	TTCGAA	1 cut(s)	307
PaeR7I	CTCGAG	1 cut(s)	410
PfeI	GAWTC	2 cut(s)	43, 117
PkrI	GCNGC	1 cut(s)	51
PspN4I	GGNNCC	1 cut(s)	246
PsuI	RGATCY	1 cut(s)	244
RsaI	GTAC	2 cut(s)	294, 524
RsaNI	GTAC	2 cut(s)	293, 523
SaqAI	TTAA	3 cut(s)	8, 210, 458
SatI	GCNGC	1 cut(s)	50
Sau3AI	GATC	3 cut(s)	86, 140, 244
ScaI	AGTACT	1 cut(s)	294
SduI	GDGCHC	2 cut(s)	286, 486
SetI	ASST	5 cut(s)	105, 216, 358, 464, 598
SfaNI	GCATC	3 cut(s)	206, 359, 519
Sfr274I	CTCGAG	1 cut(s)	410
SfuI	TTCGAA	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	410
SmlI	CTYRAG	5 cut(s)	185, 373, 410, 539, 597
SmoI	CTYRAG	5 cut(s)	185, 373, 410, 539, 597
SpeI	ACTAGT	1 cut(s)	295
Sse9I	AATT	5 cut(s)	9, 55, 78, 109, 318
SsiI	CCGC	4 cut(s)	47, 50, 339, 431
SspMI	CTAG	1 cut(s)	296
TaaI	ACNGT	2 cut(s)	274, 332
TaqI	TCGA	4 cut(s)	139, 307, 411, 477
TasI	AATT	5 cut(s)	9, 55, 78, 109, 318
TatI	WGTACW	2 cut(s)	292, 522
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	2 cut(s)	43, 117
Tru1I	TTAA	3 cut(s)	8, 210, 458
Tru9I	TTAA	3 cut(s)	8, 210, 458
TscAI	CASTG	2 cut(s)	279, 335
TspDTI	ATGAA	2 cut(s)	90, 454
TspGWI	ACGGA	1 cut(s)	257
TspRI	CASTG	2 cut(s)	279, 335
XapI	RAATTY	3 cut(s)	55, 78, 109
XhoI	CTCGAG	1 cut(s)	410
XspI	CTAG	1 cut(s)	296
ZrmI	AGTACT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.