Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Reverse (-)

318919 .. 321279

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g00520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAGAAGCAGCAAAAGACGAACGACTACGAAGACGACGACGTTTTGGAGCCGCCGATCAATTTCTCGATGGTGGAGGACGGCATTTTCAGATCTGGCTTCCCTCAGCCCGCCAATTTCCCCTTCCTCCGCTCCCTCAATCTCCGATCAATCATATACTTGTGTCCTGAGCCCTATCCGGAGGAGAATTTGGAGTTTCTTCGCTCTCAAAACATTCGGCTCCTGCAATTCGGAATTGAGGGAAAGACGGATCCTGCCATATTAATTCCCAAGGATACAATCTTGGAGGCTTTGAAAATCTTGATTGATGTGAGAAATCACCCGGTGTTGATTCATTGCAAGCGTGGAAAGCATCGCACTGGATGTCTTGTTGGTTGCCTGCGTAAGTTTCAGAATTGGTGTTTGTCATCTGTGTTTGAGGAGTACCAGCGATTTGCTGGGGTGAAGGCAAGGCCAACAGATTTGAGATTCATAGAGGCATTTGATATAATGCGCCTGAGGCAATGCCTTTACAGTATTATCTACCAGTATCAAGGTTACGGTTCTAACAAGAGGCGGTTGGTGTACAGAGATGAGAATTTACAGAAGCCCCAGACCATGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

203

Amino Acids

23.78

Weight (kDa)

8.7

Isoelectric Point (pI)

63.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	18 - 164	4e-60	Tyrosine phosphatase family
PTP-NADK	PF22741	68 - 131	1.7e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	132
AccIII	TCCGGA	1 cut(s)	178
AciI	CCGC	4 cut(s)	53, 111, 130, 556
AclWI	GGATC	2 cut(s)	245, 258
AcsI	RAATTY	2 cut(s)	187, 577
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	2 cut(s)	425, 566
AgsI	TTSAA	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	107, 139
AlwI	GGATC	2 cut(s)	245, 258
Aor13HI	TCCGGA	1 cut(s)	178
AoxI	GGCC	1 cut(s)	452
ApeKI	GCWGC	1 cut(s)	10
ApoI	RAATTY	2 cut(s)	187, 577
AseI	ATTAAT	1 cut(s)	263
AspLEI	GCGC	1 cut(s)	495
AsuC2I	CCSGG	1 cut(s)	323
AsuHPI	GGTGA	2 cut(s)	311, 454
AxyI	CCTNAGG	1 cut(s)	497
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	39
BbvCI	CCTCAGC	1 cut(s)	105
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	1 cut(s)	64
BceAI	ACGGC	1 cut(s)	97
BciVI	GTATCC	1 cut(s)	268
BcnI	CCSGG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	268
BglII	AGATCT	1 cut(s)	92
BisI	GCNGC	2 cut(s)	11, 53
BlsI	GCNGC	2 cut(s)	12, 54
Bme1390I	CCNGG	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	51, 221, 252
BmrFI	CCNGG	1 cut(s)	323
BmsI	GCATC	1 cut(s)	361
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	2 cut(s)	105, 168
BpuMI	CCSGG	1 cut(s)	323
BsaJI	CCNNGG	1 cut(s)	270
BsaWI	WCCGGW	1 cut(s)	178
Bse1I	ACTGG	2 cut(s)	364, 526
Bse21I	CCTNAGG	1 cut(s)	497
Bse3DI	GCAATG	2 cut(s)	334, 509
BseAI	TCCGGA	1 cut(s)	178
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	368
BseMI	GCAATG	2 cut(s)	334, 509
BseMII	CTCAG	3 cut(s)	119, 159, 488
BseNI	ACTGG	2 cut(s)	364, 526
BseRI	GAGGAG	2 cut(s)	197, 434
BseXI	GCAGC	1 cut(s)	22
BseYI	CCCAGC	1 cut(s)	437
BshFI	GGCC	1 cut(s)	454
BsiSI	CCGG	2 cut(s)	179, 323
BsnI	GGCC	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp13I	TCCGGA	1 cut(s)	178
Bsp1407I	TGTACA	1 cut(s)	564
Bsp143I	GATC	4 cut(s)	57, 92, 146, 250
BspACI	CCGC	4 cut(s)	53, 111, 130, 556
BspANI	GGCC	1 cut(s)	454
BspCNI	CTCAG	3 cut(s)	118, 160, 489
BspEI	TCCGGA	1 cut(s)	178
BspLI	GGNNCC	3 cut(s)	51, 221, 252
BspPI	GGATC	2 cut(s)	245, 258
BsrBI	CCGCTC	1 cut(s)	132
BsrDI	GCAATG	2 cut(s)	334, 509
BsrGI	TGTACA	1 cut(s)	564
BsrI	ACTGG	2 cut(s)	364, 526
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	57, 92, 146, 250
BssT1I	CCWWGG	1 cut(s)	270
Bst4CI	ACNGT	2 cut(s)	515, 542
BstAUI	TGTACA	1 cut(s)	564
BstC8I	GCNNGC	3 cut(s)	111, 341, 380
BstDEI	CTNAG	3 cut(s)	105, 168, 497
BstF5I	GGATG	1 cut(s)	368
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	4 cut(s)	60, 95, 149, 253
BstMBI	GATC	4 cut(s)	57, 92, 146, 250
BstMWI	GCNNNNNNNGC	2 cut(s)	349, 499
BstSCI	CCNGG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	22
BstV2I	GAAGAC	1 cut(s)	39
BstX2I	RGATCY	2 cut(s)	92, 250
BstYI	RGATCY	2 cut(s)	92, 250
Bsu36I	CCTNAGG	1 cut(s)	497
BsuI	GTATCC	1 cut(s)	268
BsuRI	GGCC	1 cut(s)	454
BtgZI	GCGATG	1 cut(s)	338
BtsCI	GGATG	1 cut(s)	368
BtsIMutI	CAGTG	1 cut(s)	357
Cac8I	GCNNGC	3 cut(s)	111, 341, 380
CfoI	GCGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	424, 565
CviAII	CATG	1 cut(s)	598
CviJI	RGCY	8 cut(s)	52, 99, 109, 172, 220, 290, 454, 589
CviKI_1	RGCY	8 cut(s)	52, 99, 109, 172, 220, 290, 454, 589
CviQI	GTAC	2 cut(s)	424, 565
DdeI	CTNAG	3 cut(s)	105, 168, 497
DpnI	GATC	4 cut(s)	59, 94, 148, 252
DpnII	GATC	4 cut(s)	57, 92, 146, 250
DraIII	CACNNNGTG	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	174
Eco81I	CCTNAGG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	1 cut(s)	174
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	601
FaiI	YATR	6 cut(s)	155, 157, 260, 473, 488, 599
FatI	CATG	1 cut(s)	597
FauI	CCCGC	1 cut(s)	118
Fnu4HI	GCNGC	2 cut(s)	11, 53
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	11, 53
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	2 cut(s)	11, 53
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	454
HapII	CCGG	2 cut(s)	179, 323
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	1 cut(s)	601
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	2 cut(s)	331, 468
HpaII	CCGG	2 cut(s)	179, 323
HphI	GGTGA	2 cut(s)	311, 454
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	4 cut(s)	92, 146, 233, 393
Hpy188III	TCNNGA	4 cut(s)	67, 167, 179, 301
Hpy8I	GTNNAC	1 cut(s)	565
Hpy99I	CGWCG	2 cut(s)	41, 44
HpyAV	CCTTC	2 cut(s)	133, 439
HpyCH4III	ACNGT	2 cut(s)	515, 542
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	2 cut(s)	226, 339
HpyF10VI	GCNNNNNNNGC	2 cut(s)	349, 499
HpyF3I	CTNAG	3 cut(s)	105, 168, 497
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	1 cut(s)	601
HspAI	GCGC	1 cut(s)	493
Kpn2I	TCCGGA	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	57, 92, 146, 250
LmnI	GCTCC	3 cut(s)	49, 137, 225
Lsp1109I	GCAGC	1 cut(s)	22
LweI	GCATC	1 cut(s)	361
MaeII	ACGT	1 cut(s)	42
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	4 cut(s)	59, 94, 148, 252
MbiI	CCGCTC	1 cut(s)	132
MboI	GATC	4 cut(s)	57, 92, 146, 250
MboII	GAAGA	2 cut(s)	44, 191
MflI	RGATCY	2 cut(s)	92, 250
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	8 cut(s)	61, 115, 187, 227, 234, 264, 394, 577
MroI	TCCGGA	1 cut(s)	178
MseI	TTAA	2 cut(s)	263, 607
MspI	CCGG	2 cut(s)	179, 323
MspR9I	CCNGG	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	349, 499
NciI	CCSGG	1 cut(s)	323
NdeII	GATC	4 cut(s)	57, 92, 146, 250
NlaIII	CATG	1 cut(s)	601
NlaIV	GGNNCC	3 cut(s)	51, 221, 252
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PfeI	GAWTC	2 cut(s)	331, 468
PkrI	GCNGC	2 cut(s)	12, 54
PshBI	ATTAAT	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	437
PspN4I	GGNNCC	3 cut(s)	51, 221, 252
PsuI	RGATCY	2 cut(s)	92, 250
RsaI	GTAC	2 cut(s)	425, 566
RsaNI	GTAC	2 cut(s)	424, 565
SaqAI	TTAA	2 cut(s)	263, 607
SatI	GCNGC	2 cut(s)	11, 53
Sau3AI	GATC	4 cut(s)	57, 92, 146, 250
ScrFI	CCNGG	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	2 cut(s)	45, 538
SfaNI	GCATC	1 cut(s)	361
Sse9I	AATT	8 cut(s)	61, 115, 187, 227, 234, 264, 394, 577
SsiI	CCGC	4 cut(s)	53, 111, 130, 556
StyD4I	CCNGG	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	2 cut(s)	515, 542
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	68
TasI	AATT	8 cut(s)	61, 115, 187, 227, 234, 264, 394, 577
TatI	WGTACW	1 cut(s)	564
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	331, 468
Tru1I	TTAA	2 cut(s)	263, 607
Tru9I	TTAA	2 cut(s)	263, 607
TscAI	CASTG	1 cut(s)	364
TseI	GCWGC	1 cut(s)	10
TspDTI	ATGAA	2 cut(s)	323, 460
TspGWI	ACGGA	1 cut(s)	263
TspRI	CASTG	1 cut(s)	364
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	2 cut(s)	187, 577
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.