Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Reverse (-)

429612 .. 432155

Gene Structure 2544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G000480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACGATGACGATGACGATGACGATGGAGAAGCAGAACAAGATGAACGACCACGACGACGTTTTGGAGCCGCCGATCAATTTCTCGATGGTGGAGGACGGCATTTTCAGATCTGGCTTCCCTCACCCGGCCAACTTCCCTTTCCTCAAGTCCCTCAATCTCCGATCAATCATATATTTGTGTCCTGAGCCATATCCAGAGGAGAATTTGGAGTTTCTTCGCTCTCAAAACATTCGGCTCCTCCAATTCGGAATCGAGGGAAAGACGGAGTCTGTAGCTATTCCCAAGGATACTATCTTGGAGGCTTTGAAAATCTTGATTGATGTGAGAAATCATCCTGTGTTGATCCATTGCAAGCGTGGAAAGCATCGGACTGGTTGTCTTGTTGGTTGCCTGCGAAAATTTCAAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCTGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

152

Amino Acids

17.34

Weight (kDa)

7.64

Isoelectric Point (pI)

62.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	24 - 136	1.1e-45	Tyrosine phosphatase family
PTP-NADK	PF22741	97 - 135	8.7e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	71
AclWI	GGATC	1 cut(s)	340
AcoI	YGGCCR	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	205, 401
AfaI	GTAC	1 cut(s)	439
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	2 cut(s)	310, 407
AhdI	GACNNNNNGTC	1 cut(s)	378
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	1 cut(s)	340
AoxI	GGCC	1 cut(s)	129
ApoI	RAATTY	2 cut(s)	205, 401
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	413
BccI	CCATC	2 cut(s)	19, 82
BceAI	ACGGC	1 cut(s)	115
BciVI	GTATCC	1 cut(s)	283
BcnI	CCSGG	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	273
BfuI	GTATCC	1 cut(s)	283
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	1 cut(s)	71
BlsI	GCNGC	1 cut(s)	72
Bme1390I	CCNGG	1 cut(s)	128
BmeRI	GACNNNNNGTC	1 cut(s)	378
BmiI	GGNNCC	2 cut(s)	69, 239
BmrFI	CCNGG	1 cut(s)	128
BmsI	GCATC	1 cut(s)	376
BpiI	GAAGAC	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	131
BpuMI	CCSGG	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	285
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	3 cut(s)	215, 230, 448
BseYI	CCCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	136
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmFI	GGGAC	1 cut(s)	136
BsnI	GGCC	1 cut(s)	131
Bsp143I	GATC	4 cut(s)	75, 110, 164, 345
BspACI	CCGC	1 cut(s)	71
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	69, 239
BspPI	GGATC	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	285
BssMI	GATC	4 cut(s)	75, 110, 164, 345
BssT1I	CCWWGG	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	356, 395
BstDEI	CTNAG	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	4 cut(s)	78, 113, 167, 348
BstMBI	GATC	4 cut(s)	75, 110, 164, 345
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstSCI	CCNGG	1 cut(s)	126
BstSFI	CTRYAG	1 cut(s)	273
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BsuI	GTATCC	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	334
Cac8I	GCNNGC	2 cut(s)	356, 395
Csp6I	GTAC	1 cut(s)	438
CviJI	RGCY	7 cut(s)	70, 117, 131, 190, 238, 278, 305
CviKI_1	RGCY	7 cut(s)	70, 117, 131, 190, 238, 278, 305
CviQI	GTAC	1 cut(s)	438
DdeI	CTNAG	1 cut(s)	186
DpnI	GATC	4 cut(s)	77, 112, 166, 347
DpnII	GATC	4 cut(s)	75, 110, 164, 345
DriI	GACNNNNNGTC	1 cut(s)	378
EaeI	YGGCCR	1 cut(s)	129
Eam1105I	GACNNNNNGTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	285
EcoT14I	CCWWGG	1 cut(s)	285
ErhI	CCWWGG	1 cut(s)	285
FaiI	YATR	3 cut(s)	173, 175, 193
FaqI	GGGAC	1 cut(s)	136
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	71
GluI	GCNGC	1 cut(s)	71
GsaI	CCCAGC	1 cut(s)	455
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	2 cut(s)	252, 269
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	4 cut(s)	110, 164, 251, 372
Hpy188III	TCNNGA	4 cut(s)	85, 185, 197, 316
Hpy99I	CGWCG	2 cut(s)	59, 62
HpyCH4IV	ACGT	1 cut(s)	60
HpyCH4V	TGCA	1 cut(s)	354
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	1 cut(s)	186
HpySE526I	ACGT	1 cut(s)	60
Kzo9I	GATC	4 cut(s)	75, 110, 164, 345
LmnI	GCTCC	2 cut(s)	67, 243
LpnPI	CCDG	9 cut(s)	99, 141, 198, 210, 351, 360, 407, 437, 454
LweI	GCATC	1 cut(s)	376
MaeII	ACGT	1 cut(s)	60
MalI	GATC	4 cut(s)	77, 112, 166, 347
MboI	GATC	4 cut(s)	75, 110, 164, 345
MboII	GAAGA	2 cut(s)	209, 413
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	5 cut(s)	79, 205, 245, 401, 408
MlyI	GAGTC	1 cut(s)	278
MnlI	CCTC	9 cut(s)	88, 132, 155, 164, 193, 250, 251, 295, 426
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	364
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	4 cut(s)	75, 110, 164, 345
NlaIV	GGNNCC	2 cut(s)	69, 239
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	252
PflFI	GACNNNGTC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
PspFI	CCCAGC	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	69, 239
PsuI	RGATCY	1 cut(s)	110
PsyI	GACNNNGTC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	439
RsaNI	GTAC	1 cut(s)	438
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	4 cut(s)	75, 110, 164, 345
SchI	GAGTC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	128
SetI	ASST	2 cut(s)	63, 280
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	79, 205, 245, 401, 408
SsiI	CCGC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	126
StyI	CCWWGG	1 cut(s)	285
TaiI	ACGT	1 cut(s)	63
TaqI	TCGA	2 cut(s)	86, 255
TasI	AATT	5 cut(s)	79, 205, 245, 401, 408
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	252
TspDTI	ATGAA	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	281
Tth111I	GACNNNGTC	1 cut(s)	268
XapI	RAATTY	2 cut(s)	205, 401
XcmI	CCANNNNNNNNNTGG	2 cut(s)	356, 448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.