Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Reverse (-)

427540 .. 430465

Gene Structure 2926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGACGATGACGATGGAGAAGCAGAACAAGATGAACGACCACGACGACGTTTTGGAGCCGCCGATCAATTTCTCGATGGTGGAGGACGGCATTTTCAGATCTGGCTTCCCTCAGCCGGCCAACTTCCCTTTCCTCAAGTCCCTCAATCTCCGATCAATCATATATTTGTGTCCTGAGCCATATCCAGAGGAGAATTTGGAGTTTCTTCGCTCTCAAAACATTCGGCTCCTACAATTCGGAATCGAGGGAAAGACGGAGTCTGTAGCTATTCCCAAGGATACTATCTTGGAGGCTTTGAAAATCTTGATTGATGTGAGAAATCATCCTGTGTTGATCCATTGCAAGCGTGGAAAGCATCGGACTGGTTGTCTTGTTGGTTGCCTGCGAAAATTTCAGAATTGGTGTTTGTCTTCTGTGTTTGAGGAGTACCAGCGATTTGCTGGGGTGAAGTCGAGGCCAACAGATTTGAAATTCATAGAGGCATTTGACATAATGCGCTTGAGGCAATGCCTTTACAGCATTATCTACCAGTATCAAGGTTACGGTTCTAACAAGAGGCGGTTGGTGTACAGAGATGAGAAGATACAGAAGCCCCAAACCATGAAAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

203

Amino Acids

23.84

Weight (kDa)

9.11

Isoelectric Point (pI)

58.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	20 - 165	1.4e-59	Tyrosine phosphatase family
PTP-NADK	PF22741	93 - 132	8.2e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 559
AclWI	GGATC	1 cut(s)	328
AcoI	YGGCCR	1 cut(s)	117
AcsI	RAATTY	3 cut(s)	193, 389, 470
AfaI	GTAC	2 cut(s)	428, 569
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	2 cut(s)	298, 469
AhdI	GACNNNNNGTC	1 cut(s)	366
AjuI	GAANNNNNNNTTGG	2 cut(s)	113, 145
AluBI	AGCT	1 cut(s)	266
AluI	AGCT	1 cut(s)	266
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	2 cut(s)	117, 455
ApoI	RAATTY	3 cut(s)	193, 389, 470
AspLEI	GCGC	1 cut(s)	498
AsuHPI	GGTGA	1 cut(s)	457
BbsI	GAAGAC	1 cut(s)	402
BbvCI	CCTCAGC	1 cut(s)	111
BccI	CCATC	2 cut(s)	7, 70
BceAI	ACGGC	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	271
BfmI	CTRYAG	1 cut(s)	261
BfuI	GTATCC	1 cut(s)	271
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	1 cut(s)	59
BlsI	GCNGC	1 cut(s)	60
BmeRI	GACNNNNNGTC	1 cut(s)	366
BmiI	GGNNCC	2 cut(s)	57, 227
BmsI	GCATC	1 cut(s)	364
BpiI	GAAGAC	1 cut(s)	402
Bpu10I	CCTNAGC	2 cut(s)	111, 174
BpuEI	CTTGAG	2 cut(s)	119, 520
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	367, 529
Bse3DI	GCAATG	2 cut(s)	337, 512
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	322
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	2 cut(s)	337, 512
BseMII	CTCAG	2 cut(s)	125, 165
BseNI	ACTGG	2 cut(s)	367, 529
BseRI	GAGGAG	2 cut(s)	203, 437
BseYI	CCCAGC	1 cut(s)	440
BshFI	GGCC	2 cut(s)	119, 457
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	124
BsnI	GGCC	2 cut(s)	119, 457
Bsp1407I	TGTACA	1 cut(s)	567
Bsp143I	GATC	4 cut(s)	63, 98, 152, 333
BspACI	CCGC	2 cut(s)	59, 559
BspANI	GGCC	2 cut(s)	119, 457
BspCNI	CTCAG	2 cut(s)	124, 166
BspLI	GGNNCC	2 cut(s)	57, 227
BspPI	GGATC	1 cut(s)	328
BsrDI	GCAATG	2 cut(s)	337, 512
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	567
BsrI	ACTGG	2 cut(s)	367, 529
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	63, 98, 152, 333
BssT1I	CCWWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	567
BstC8I	GCNNGC	3 cut(s)	117, 344, 383
BstDEI	CTNAG	2 cut(s)	111, 174
BstF5I	GGATG	1 cut(s)	322
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	4 cut(s)	66, 101, 155, 336
BstMBI	GATC	4 cut(s)	63, 98, 152, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	352, 502, 516
BstSFI	CTRYAG	1 cut(s)	261
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	271
BsuRI	GGCC	2 cut(s)	119, 457
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	3 cut(s)	117, 344, 383
CfoI	GCGC	1 cut(s)	498
Cfr10I	RCCGGY	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	427, 568
CviAII	CATG	1 cut(s)	601
CviQI	GTAC	2 cut(s)	427, 568
DdeI	CTNAG	2 cut(s)	111, 174
DpnI	GATC	4 cut(s)	65, 100, 154, 335
DpnII	GATC	4 cut(s)	63, 98, 152, 333
DriI	GACNNNNNGTC	1 cut(s)	366
EaeI	YGGCCR	1 cut(s)	117
Eam1105I	GACNNNNNGTC	1 cut(s)	366
Eco130I	CCWWGG	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	604
FaiI	YATR	6 cut(s)	161, 163, 181, 476, 491, 602
FaqI	GGGAC	1 cut(s)	124
FatI	CATG	1 cut(s)	600
Fnu4HI	GCNGC	1 cut(s)	59
FokI	GGATG	1 cut(s)	309
Fsp4HI	GCNGC	1 cut(s)	59
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	1 cut(s)	59
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	119, 457
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	1 cut(s)	604
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	2 cut(s)	240, 257
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	1 cut(s)	568
Hpy188I	TCNGA	5 cut(s)	98, 152, 239, 360, 396
Hpy188III	TCNNGA	4 cut(s)	73, 173, 185, 304
Hpy8I	GTNNAC	1 cut(s)	568
Hpy99I	CGWCG	2 cut(s)	47, 50
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	3 cut(s)	352, 502, 516
HpyF3I	CTNAG	2 cut(s)	111, 174
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	1 cut(s)	604
HspAI	GCGC	1 cut(s)	496
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	63, 98, 152, 333
LmnI	GCTCC	2 cut(s)	55, 231
LweI	GCATC	1 cut(s)	364
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	539
MalI	GATC	4 cut(s)	65, 100, 154, 335
MboI	GATC	4 cut(s)	63, 98, 152, 333
MboII	GAAGA	3 cut(s)	197, 402, 592
MflI	RGATCY	1 cut(s)	98
MluCI	AATT	6 cut(s)	67, 193, 233, 389, 397, 470
MlyI	GAGTC	1 cut(s)	266
MroNI	GCCGGC	1 cut(s)	115
MseI	TTAA	1 cut(s)	610
MspI	CCGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	352, 502, 516
NaeI	GCCGGC	1 cut(s)	117
NdeII	GATC	4 cut(s)	63, 98, 152, 333
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	604
NlaIV	GGNNCC	2 cut(s)	57, 227
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdiI	GCCGGC	1 cut(s)	117
PfeI	GAWTC	1 cut(s)	240
PflFI	GACNNNGTC	1 cut(s)	256
PkrI	GCNGC	1 cut(s)	60
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
PspFI	CCCAGC	1 cut(s)	440
PspN4I	GGNNCC	2 cut(s)	57, 227
PsuI	RGATCY	1 cut(s)	98
PsyI	GACNNNGTC	1 cut(s)	256
RsaI	GTAC	2 cut(s)	428, 569
RsaNI	GTAC	2 cut(s)	427, 568
SaqAI	TTAA	1 cut(s)	610
SatI	GCNGC	1 cut(s)	59
Sau3AI	GATC	4 cut(s)	63, 98, 152, 333
SchI	GAGTC	1 cut(s)	266
SetI	ASST	3 cut(s)	51, 268, 541
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	134, 499
SmoI	CTYRAG	2 cut(s)	134, 499
Sse9I	AATT	6 cut(s)	67, 193, 233, 389, 397, 470
SsiI	CCGC	2 cut(s)	59, 559
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	51
TaqI	TCGA	3 cut(s)	74, 243, 452
TasI	AATT	6 cut(s)	67, 193, 233, 389, 397, 470
TatI	WGTACW	1 cut(s)	567
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	1 cut(s)	240
Tru1I	TTAA	1 cut(s)	610
Tru9I	TTAA	1 cut(s)	610
TspDTI	ATGAA	2 cut(s)	47, 463
TspGWI	ACGGA	1 cut(s)	269
Tth111I	GACNNNGTC	1 cut(s)	256
XapI	RAATTY	3 cut(s)	193, 389, 470
XcmI	CCANNNNNNNNNTGG	2 cut(s)	344, 437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.