Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005467

Physical Location & Seq

Genomic Coordinates Forward (+)

1810073 .. 1810666

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1025100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGACCATGACCAACAACGACAACGTTTTGGAGCCGCCCATCAATTTCTCGATGGTGGATGAGGGCGTATTCCGATCAGGCTTCCCGCAGCCGTCAAACTTCCCATTCCTCCAATCCCTTCAACTCCGTTCCATTATCTATCTCTGCCCCGAGCCCTACCCGGAGGAGAGTTTGGAGTTTCTTCGGTCGCAAGGCATTCGGCTCTTCCAGTTCGGAATCGAGGGCAAGAAGGAGCGGTCTACGTCTCCGCTGATTCCAGCAGAGACCATCTCCGAGGCACTGAAAGTTTTGGTTGAAATTGAGAATCATCCGGTGTTGATCCACTGCAAACGCGGCAAGCATCGGACTGGTTGTCTGGTGGGTTGCCTGAGGAAATTTCAGAATTGGTGTTTGTCTTCGGCGTTAGAGGAGTACCAGCGGTTTGCCGGCGAAAAATCTAGGGGGACGGATTTGAGATTTATCGAGACGTTTGACGTATTGGGCCTCAGGGGGGATGCCTTCACGGCATTGTCCGCCATTATTATTAAGTTTATGCTTCCGGAAAGAGGCGGTTGTTGTACAAACAAGAGTTGCAAACCCATAAACCCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004725 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0035335 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Y_phosphatase2

Protein Analysis

198

Amino Acids

22.3

Weight (kDa)

8.12

Isoelectric Point (pI)

62.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Y_phosphatase2	PF03162	12 - 159	9.3e-58	Tyrosine phosphatase family
PTP-NADK	PF22741	87 - 132	3.3e-06	DSP-PTPase phosphatase fused to NAD+ Kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005467)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02800 AT5G16480 AT5G16480
fragaria_vesca	FvH4_6g00520
malus_domestica	MD04G1244500.v1.1 MD12G1260400.v1.1 MD16G1025100.v1.1
prunus_persica	Prupe.1G328300_v2.0.a1 Prupe.6G361100_v2.0.a1
pyrus_communis	pycom04g21540 pycom12g23850 pycom16g02110
rosa_chinensis	RchiOBHm_Chr3g0447901 RchiOBHm_Chr4g0441711
rosa_laevigata	RLG00000006073 RLG00000025962
rosa_multiflora	Rmu_sc0005969.1_g000003 Rmu_sc0033808.1_g000001
rosa_roxburghii	Rroxscaffold_5G00382540 Rroxscaffold_6G00426100
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh3AG006200 Rh3BG005800 Rh3CG006100 Rh3DG006400 Rh4AG387000 Rh4DG394100
rosa_wichuraiana	Rw3G000480 Rw4G033440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	239
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	538
AciI	CCGC	8 cut(s)	35, 86, 235, 248, 333, 418, 513, 549
AclI	AACGTT	1 cut(s)	24
AclWI	GGATC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	374
AfaI	GTAC	2 cut(s)	413, 559
AfiI	CCNNNNNNNGG	2 cut(s)	490, 545
AgsI	TTSAA	2 cut(s)	122, 296
AhdI	GACNNNNNGTC	1 cut(s)	351
Alw26I	GTCTC	3 cut(s)	249, 257, 458
AlwI	GGATC	1 cut(s)	313
Ama87I	CYCGRG	1 cut(s)	149
Aor13HI	TCCGGA	1 cut(s)	538
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	1 cut(s)	88
ApoI	RAATTY	1 cut(s)	374
AspA2I	CCTAGG	1 cut(s)	587
AspS9I	GGNCC	1 cut(s)	481
AsuC2I	CCSGG	1 cut(s)	161
AvaI	CYCGRG	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	587
AxyI	CCTNAGG	2 cut(s)	368, 485
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	3 cut(s)	46, 47, 275
BceAI	ACGGC	2 cut(s)	76, 519
BcgI	CGANNNNNNTGC	2 cut(s)	179, 213
BcnI	CCSGG	1 cut(s)	161
BcoDI	GTCTC	3 cut(s)	249, 257, 458
BfaI	CTAG	2 cut(s)	438, 588
BglI	GCCNNNNNGGC	1 cut(s)	503
BisI	GCNGC	3 cut(s)	35, 89, 334
BlnI	CCTAGG	1 cut(s)	587
BlsI	GCNGC	3 cut(s)	36, 90, 335
Bme1390I	CCNGG	1 cut(s)	161
BmeRI	GACNNNNNGTC	1 cut(s)	351
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	349, 484
BpiI	GAAGAC	1 cut(s)	387
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuMI	CCSGG	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	257
BsaJI	CCNNGG	2 cut(s)	273, 587
BsaWI	WCCGGW	2 cut(s)	310, 538
Bsc4I	CCNNNNNNNGG	2 cut(s)	490, 545
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	2 cut(s)	208, 352
Bse21I	CCTNAGG	2 cut(s)	368, 485
BseAI	TCCGGA	1 cut(s)	538
BseDI	CCNNGG	2 cut(s)	273, 587
BseGI	GGATG	3 cut(s)	64, 307, 499
BseLI	CCNNNNNNNGG	2 cut(s)	490, 545
BseMII	CTCAG	2 cut(s)	359, 499
BseNI	ACTGG	2 cut(s)	208, 352
BseRI	GAGGAG	2 cut(s)	179, 422
BseXI	GCAGC	1 cut(s)	100
Bsh1236I	CGCG	1 cut(s)	333
Bsh1285I	CGRYCG	1 cut(s)	188
BshFI	GGCC	1 cut(s)	483
BsiEI	CGRYCG	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	149
BsiSI	CCGG	4 cut(s)	161, 311, 426, 539
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	2 cut(s)	490, 545
BsmAI	GTCTC	3 cut(s)	249, 257, 458
BsmBI	CGTCTC	2 cut(s)	249, 458
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	483
Bso31I	GGTCTC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp13I	TCCGGA	1 cut(s)	538
Bsp1407I	TGTACA	1 cut(s)	557
Bsp143I	GATC	2 cut(s)	74, 318
BspACI	CCGC	8 cut(s)	35, 86, 235, 248, 333, 418, 513, 549
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	2 cut(s)	360, 498
BspEI	TCCGGA	1 cut(s)	538
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	33
BspPI	GGATC	1 cut(s)	313
BspQI	GCTCTTC	1 cut(s)	209
BspTNI	GGTCTC	1 cut(s)	257
BsrBI	CCGCTC	1 cut(s)	235
BsrFI	RCCGGY	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	557
BsrI	ACTGG	2 cut(s)	208, 352
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	2 cut(s)	273, 587
BssMI	GATC	2 cut(s)	74, 318
BssT1I	CCWWGG	1 cut(s)	587
Bst6I	CTCTTC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	557
BstC8I	GCNNGC	2 cut(s)	338, 427
BstDEI	CTNAG	2 cut(s)	368, 485
BstF5I	GGATG	3 cut(s)	64, 307, 499
BstFNI	CGCG	1 cut(s)	333
BstKTI	GATC	2 cut(s)	77, 321
BstMAI	GTCTC	3 cut(s)	249, 257, 458
BstMBI	GATC	2 cut(s)	74, 318
BstMCI	CGRYCG	1 cut(s)	188
BstMWI	GCNNNNNNNGC	3 cut(s)	333, 503, 512
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	100
BstV2I	GAAGAC	1 cut(s)	387
Bsu36I	CCTNAGG	2 cut(s)	368, 485
BsuRI	GGCC	1 cut(s)	483
BtsCI	GGATG	3 cut(s)	64, 307, 499
BtsI	GCAGTG	1 cut(s)	322
BtsIMutI	CAGTG	2 cut(s)	278, 322
Cac8I	GCNNGC	2 cut(s)	338, 427
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	481
Csp6I	GTAC	2 cut(s)	412, 558
CviAII	CATG	1 cut(s)	7
CviJI	RGCY	6 cut(s)	34, 81, 91, 154, 202, 483
CviKI_1	RGCY	6 cut(s)	34, 81, 91, 154, 202, 483
CviQI	GTAC	2 cut(s)	412, 558
DdeI	CTNAG	2 cut(s)	368, 485
DpnI	GATC	2 cut(s)	76, 320
DpnII	GATC	2 cut(s)	74, 318
DriI	GACNNNNNGTC	1 cut(s)	351
Eam1104I	CTCTTC	1 cut(s)	209
Eam1105I	GACNNNNNGTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	209
EciI	GGCGGA	1 cut(s)	502
Eco130I	CCWWGG	1 cut(s)	587
Eco24I	GRGCYC	1 cut(s)	156
Eco31I	GGTCTC	1 cut(s)	257
Eco81I	CCTNAGG	2 cut(s)	368, 485
Eco88I	CYCGRG	1 cut(s)	149
EcoT14I	CCWWGG	1 cut(s)	587
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	587
Esp3I	CGTCTC	2 cut(s)	249, 458
FaeI	CATG	1 cut(s)	10
FaiI	YATR	3 cut(s)	8, 533, 581
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	1 cut(s)	6
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	239
Fnu4HI	GCNGC	3 cut(s)	35, 89, 334
FokI	GGATG	3 cut(s)	71, 294, 506
FriOI	GRGCYC	1 cut(s)	156
Fsp4HI	GCNGC	3 cut(s)	35, 89, 334
FspBI	CTAG	2 cut(s)	438, 588
GluI	GCNGC	3 cut(s)	35, 89, 334
HaeIII	GGCC	1 cut(s)	483
HapII	CCGG	4 cut(s)	161, 311, 426, 539
Hin1II	CATG	1 cut(s)	10
HinfI	GANTC	3 cut(s)	216, 253, 304
HpaII	CCGG	4 cut(s)	161, 311, 426, 539
Hpy166II	GTNNAC	1 cut(s)	240
Hpy188I	TCNGA	5 cut(s)	74, 215, 274, 345, 381
Hpy188III	TCNNGA	3 cut(s)	49, 463, 539
Hpy8I	GTNNAC	1 cut(s)	240
HpyAV	CCTTC	3 cut(s)	128, 223, 508
HpyCH4IV	ACGT	4 cut(s)	24, 242, 467, 474
HpyCH4V	TGCA	2 cut(s)	327, 573
HpyF10VI	GCNNNNNNNGC	3 cut(s)	333, 503, 512
HpyF3I	CTNAG	2 cut(s)	368, 485
HpySE526I	ACGT	4 cut(s)	24, 242, 467, 474
Hsp92II	CATG	1 cut(s)	10
Kpn2I	TCCGGA	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	74, 318
LguI	GCTCTTC	1 cut(s)	209
LmnI	GCTCC	2 cut(s)	31, 232
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	2 cut(s)	349, 484
MaeI	CTAG	2 cut(s)	438, 588
MaeII	ACGT	4 cut(s)	24, 242, 467, 474
MalI	GATC	2 cut(s)	76, 320
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	2 cut(s)	74, 318
MboII	GAAGA	3 cut(s)	173, 196, 387
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	4 cut(s)	43, 297, 374, 382
MnlI	CCTC	9 cut(s)	55, 119, 157, 214, 268, 363, 400, 494, 539
MroI	TCCGGA	1 cut(s)	538
MroNI	GCCGGC	1 cut(s)	425
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	2 cut(s)	250, 418
MspI	CCGG	4 cut(s)	161, 311, 426, 539
MspR9I	CCNGG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	195
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	3 cut(s)	333, 503, 512
NaeI	GCCGGC	1 cut(s)	427
NciI	CCSGG	1 cut(s)	161
NdeII	GATC	2 cut(s)	74, 318
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	209
PctI	GAATGC	1 cut(s)	195
PdiI	GCCGGC	1 cut(s)	427
PfeI	GAWTC	3 cut(s)	216, 253, 304
PkrI	GCNGC	3 cut(s)	36, 90, 335
Psp1406I	AACGTT	1 cut(s)	24
PspN4I	GGNNCC	1 cut(s)	33
PspPI	GGNCC	1 cut(s)	481
RsaI	GTAC	2 cut(s)	413, 559
RsaNI	GTAC	2 cut(s)	412, 558
SapI	GCTCTTC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	35, 89, 334
Sau3AI	GATC	2 cut(s)	74, 318
Sau96I	GGNCC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	5 cut(s)	27, 245, 470, 477, 593
SfaNI	GCATC	2 cut(s)	349, 484
Sse9I	AATT	4 cut(s)	43, 297, 374, 382
SsiI	CCGC	8 cut(s)	35, 86, 235, 248, 333, 418, 513, 549
SspMI	CTAG	2 cut(s)	438, 588
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	587
TaiI	ACGT	4 cut(s)	27, 245, 470, 477
TaqI	TCGA	3 cut(s)	50, 219, 462
TaqII	GACCGA	1 cut(s)	174
TasI	AATT	4 cut(s)	43, 297, 374, 382
TatI	WGTACW	1 cut(s)	557
TauI	GCSGC	2 cut(s)	37, 336
TfiI	GAWTC	3 cut(s)	216, 253, 304
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	285, 329
TseI	GCWGC	1 cut(s)	88
TspGWI	ACGGA	2 cut(s)	116, 461
TspRI	CASTG	2 cut(s)	285, 329
XapI	RAATTY	1 cut(s)	374
XmaJI	CCTAGG	1 cut(s)	587
XmiI	GTMKAC	1 cut(s)	239
XspI	CTAG	2 cut(s)	438, 588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.