Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014196

Physical Location & Seq

Genomic Coordinates Forward (+)

30451209 .. 30451907

Gene Structure 699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G361200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACAGGCAAAGCCAAGCCAAAGAAGCACACAGCCAAGGAGATCGCGGCCAAGATCGACGCAGCGACCACCAACCGCGGCGGCGGCAAAGCCGGAATCGCTGACCGGACCGGAAAAGAGAAGGGAGGGCACGCCAAGATGGAGTGCCCGCACTGCAAGATTACGGCACCGGACGTGAAGTCGATGCAGATTCACCATGAAGCTCGACATCCAAAGATCCCTTTTGAGGAGGAGAAGATTGTGAATCGCCATGCCAGCACCAGCACCAGCACCAGCACCCAAGTCGCAGAACCCTCCAAGGACGCTAACAAGCCACGACCTGGCGTTCGCGGCAGTCTCAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007584 GO:0008150 GO:0009605 GO:0009889 GO:0009987 GO:0009991 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0031670 GO:0033554 GO:0034599 GO:0034614 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071452 GO:0071496 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

116

Amino Acids

12.33

Weight (kDa)

10.01

Isoelectric Point (pI)

23.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014196)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02790 AT5G16470 AT5G16470
fragaria_vesca	FvH4_6g00510
malus_domestica	MD04G1244600.v1.1 MD12G1260500.v1.1
prunus_persica	Prupe.6G361200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0316641 RchiOBHm_Chr3g0447891
rosa_laevigata	RLG00000025963
rosa_multiflora	Rmu_sc0005969.1_g000002 Rmu_sc0033808.1_g000002
rosa_roxburghii	Rroxscaffold_6G00426090
rosa_rugosa	Rorug02G0606900
rosa_samantha	Rh1BG268500 Rh1DG298600
rosa_wichuraiana	Rw3G000470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	166
AccB7I	CCANNNNNTGG	1 cut(s)	320
AccII	CGCG	3 cut(s)	47, 78, 330
AciI	CCGC	7 cut(s)	47, 76, 78, 81, 84, 149, 330
AclWI	GGATC	1 cut(s)	211
AcoI	YGGCCR	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	226, 320
AhdI	GACNNNNNGTC	1 cut(s)	178
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	1 cut(s)	319
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	211
AoxI	GGCC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	62
ArsI	GACNNNNNNTTYG	2 cut(s)	309, 341
AspS9I	GGNCC	1 cut(s)	108
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	108
BaeGI	GKGCMC	2 cut(s)	132, 149
BanI	GGYRCC	1 cut(s)	166
BbvI	GCAGC	1 cut(s)	74
BccI	CCATC	1 cut(s)	133
BceAI	ACGGC	1 cut(s)	180
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciT130I	CCWGG	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	341
BisI	GCNGC	6 cut(s)	48, 63, 79, 82, 85, 331
BlsI	GCNGC	6 cut(s)	49, 64, 80, 83, 86, 332
Bme1390I	CCNGG	1 cut(s)	321
Bme18I	GGWCC	1 cut(s)	108
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	108
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	323
BsaJI	CCNNGG	3 cut(s)	36, 76, 297
BsaWI	WCCGGW	3 cut(s)	105, 110, 169
Bsc4I	CCNNNNNNNGG	2 cut(s)	226, 320
BseBI	CCWGG	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	36, 76, 297
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	226, 320
BseRI	GAGGAG	2 cut(s)	242, 245
BseSI	GKGCMC	2 cut(s)	132, 149
BseXI	GCAGC	1 cut(s)	74
Bsh1236I	CGCG	3 cut(s)	47, 78, 330
BshFI	GGCC	1 cut(s)	50
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	93, 106, 111, 170
BslI	CCNNNNNNNGG	2 cut(s)	226, 320
BsmAI	GTCTC	1 cut(s)	341
BsnI	GGCC	1 cut(s)	50
Bsp1286I	GDGCHC	2 cut(s)	132, 149
Bsp143I	GATC	3 cut(s)	42, 54, 216
BspACI	CCGC	7 cut(s)	47, 76, 78, 81, 84, 149, 330
BspANI	GGCC	1 cut(s)	50
BspFNI	CGCG	3 cut(s)	47, 78, 330
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	211
BspT107I	GGYRCC	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	36, 76, 297
BssMI	GATC	3 cut(s)	42, 54, 216
BssT1I	CCWWGG	2 cut(s)	36, 297
Bst2UI	CCWGG	1 cut(s)	321
BstC8I	GCNNGC	3 cut(s)	132, 149, 256
BstDSI	CCRYGG	1 cut(s)	76
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	3 cut(s)	47, 78, 330
BstKTI	GATC	3 cut(s)	45, 57, 219
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	3 cut(s)	42, 54, 216
BstMWI	GCNNNNNNNGC	6 cut(s)	25, 84, 98, 153, 255, 330
BstNI	CCWGG	1 cut(s)	321
BstSCI	CCNGG	1 cut(s)	319
BstSLI	GKGCMC	2 cut(s)	132, 149
BstUI	CGCG	3 cut(s)	47, 78, 330
BstV1I	GCAGC	1 cut(s)	74
BstX2I	RGATCY	1 cut(s)	216
BstYI	RGATCY	1 cut(s)	216
BsuRI	GGCC	1 cut(s)	50
BtgI	CCRYGG	1 cut(s)	76
BtrI	CACGTC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	151
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	3 cut(s)	132, 149, 256
Cfr13I	GGNCC	1 cut(s)	108
Cfr42I	CCGCGG	1 cut(s)	79
CpoI	CGGWCCG	1 cut(s)	108
CseI	GACGC	2 cut(s)	68, 311
CspI	CGGWCCG	1 cut(s)	108
CviAII	CATG	2 cut(s)	197, 251
CviJI	RGCY	7 cut(s)	14, 19, 35, 50, 92, 203, 313
CviKI_1	RGCY	7 cut(s)	14, 19, 35, 50, 92, 203, 313
DpnI	GATC	3 cut(s)	44, 56, 218
DpnII	GATC	3 cut(s)	42, 54, 216
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	48
Eam1105I	GACNNNNNGTC	1 cut(s)	178
Eco130I	CCWWGG	2 cut(s)	36, 297
Eco47I	GGWCC	1 cut(s)	108
EcoRII	CCWGG	1 cut(s)	319
EcoT14I	CCWWGG	2 cut(s)	36, 297
ErhI	CCWWGG	2 cut(s)	36, 297
FaeI	CATG	2 cut(s)	200, 254
FaiI	YATR	2 cut(s)	198, 252
FatI	CATG	2 cut(s)	196, 250
FauI	CCCGC	1 cut(s)	156
Fnu4HI	GCNGC	6 cut(s)	48, 63, 79, 82, 85, 331
FokI	GGATG	1 cut(s)	195
Fsp4HI	GCNGC	6 cut(s)	48, 63, 79, 82, 85, 331
GluI	GCNGC	6 cut(s)	48, 63, 79, 82, 85, 331
HaeIII	GGCC	1 cut(s)	50
HapII	CCGG	4 cut(s)	93, 106, 111, 170
HgaI	GACGC	2 cut(s)	68, 311
Hin1II	CATG	2 cut(s)	200, 254
HinfI	GANTC	3 cut(s)	96, 190, 244
HpaII	CCGG	4 cut(s)	93, 106, 111, 170
HphI	GGTGA	1 cut(s)	185
Hpy188III	TCNNGA	1 cut(s)	340
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	115
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	2 cut(s)	156, 187
HpyF10VI	GCNNNNNNNGC	6 cut(s)	25, 84, 98, 153, 255, 330
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	200, 254
KspI	CCGCGG	1 cut(s)	79
Kzo9I	GATC	3 cut(s)	42, 54, 216
Lsp1109I	GCAGC	1 cut(s)	74
LweI	GCATC	1 cut(s)	174
MaeII	ACGT	1 cut(s)	174
MalI	GATC	3 cut(s)	44, 56, 218
MboI	GATC	3 cut(s)	42, 54, 216
MboII	GAAGA	1 cut(s)	247
MflI	RGATCY	1 cut(s)	216
MhlI	GDGCHC	2 cut(s)	132, 149
MnlI	CCTC	4 cut(s)	119, 220, 223, 304
MspA1I	CMGCKG	1 cut(s)	78
MspI	CCGG	4 cut(s)	93, 106, 111, 170
MspR9I	CCNGG	1 cut(s)	321
MvaI	CCWGG	1 cut(s)	321
MvnI	CGCG	3 cut(s)	47, 78, 330
MwoI	GCNNNNNNNGC	6 cut(s)	25, 84, 98, 153, 255, 330
NdeII	GATC	3 cut(s)	42, 54, 216
NlaIII	CATG	2 cut(s)	200, 254
NlaIV	GGNNCC	1 cut(s)	168
PfeI	GAWTC	3 cut(s)	96, 190, 244
PflMI	CCANNNNNTGG	1 cut(s)	320
PkrI	GCNGC	6 cut(s)	49, 64, 80, 83, 86, 332
Psp6I	CCWGG	1 cut(s)	319
PspGI	CCWGG	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	1 cut(s)	108
PsuI	RGATCY	1 cut(s)	216
Rsr2I	CGGWCCG	1 cut(s)	108
RsrII	CGGWCCG	1 cut(s)	108
SacII	CCGCGG	1 cut(s)	79
SatI	GCNGC	6 cut(s)	48, 63, 79, 82, 85, 331
Sau3AI	GATC	3 cut(s)	42, 54, 216
Sau96I	GGNCC	1 cut(s)	108
ScrFI	CCNGG	1 cut(s)	321
SduI	GDGCHC	2 cut(s)	132, 149
SetI	ASST	3 cut(s)	177, 205, 322
SfaNI	GCATC	1 cut(s)	174
Sfr303I	CCGCGG	1 cut(s)	79
SgrBI	CCGCGG	1 cut(s)	79
SinI	GGWCC	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
SsiI	CCGC	7 cut(s)	47, 76, 78, 81, 84, 149, 330
StyD4I	CCNGG	1 cut(s)	319
StyI	CCWWGG	2 cut(s)	36, 297
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	3 cut(s)	57, 182, 205
TauI	GCSGC	5 cut(s)	50, 81, 84, 87, 333
TfiI	GAWTC	3 cut(s)	96, 190, 244
TscAI	CASTG	1 cut(s)	158
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	158
Van91I	CCANNNNNTGG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.