AT3G03110

ribosomal small subunit export from nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009963
Physical Location & Seq
Forward (+)
708698 .. 717093
8396 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03110.1

Sequence Viewer

Length: 3231 bp
ATGGCTGCCGAGAAGTTAAGAGACTTGAGTCAGCCGATTGACGTCGTTTTACTCGATGCCACTGTTGAGGCCTTTTACTCTACCGGATCTAAGGAAGAAAGAGCTTCTGCGGATAATATCTTGCGGGATTTGAAAGCTAATCCTGATACTTGGCTTCAAGTTGTTCACATTCTACAGAACACCAGTAGTACGCATACCAAATTTTTTGCCCTTCAGGTGCTGGAAGGTGTTATAAAATATAGGTGGAATGCATTACCCGTTGAACAACGTGATGGAATGAAAAATTACATCTCTGATGTCATTGTGCAGCTGTCAAGGGATGAAGCATCTTTCAGAACGGAAAGGCTTTATGTCAACAAGTTAAATATCATCCTGGTTCAGATCGTGAAACAGGAGTGGCCGGCAAAGTGGAAAAGCTTTATTCCTGATTTAGTTATAGCTGCTAAGACTAGTGAAACTATCTGTGAGAATTGCATGGCTATTTTGAAACTCCTAAGTGAAGAGGTCTTTGATTTCTCAAAAGGAGAGATGACTCAGCAAAAGATAAAAGAACTGAAACAGTCTCTAAACAGCGAGTTTCAACTCATTCACGAGTTATGCCTATATGTCCTCTCAGCTTCCCAAAGACAAGAGCTTATACGTGCTACACTCTCTGCATTGCATGCCTATCTTTCTTGGATTCCGTTGGGATACATATTTGAGTCCCCTTTGCTGGAGATCCTACTTAAATTCTTCCCTGTTCCAGCATATAGGAATCTCACACTTCAATGTTTGTCAGAGGTTGCATCTCTTAATTTTGGGGACTTCTACGATATGCAATATGTCAAGATGTACAGCATTTTCATGAATCAGTTGCAGGCAATTCTCCCTTTAAATTTAAATATCCCTGAGGCATATTCAACTGGAAGTAGTGAAGAACAGGCTTTTATCCAGAACTTGGCACTGTTTTTCACTTCGTTTTTCAAGTTACATATAAAAATCCTAGAATCTGCACCCGAAAATATTTCTCTATTACTTGCGGGTCTGGGATATCTCATTAGCATATCGTATGTTGATGACACTGAAGTATTCAAGGTTTGTTTGGACTATTGGAATTCATTAGTGTTGGAGTTGTTTGGGACGCGACATCATGCGTGTCACCCTGCACTAACTCCAAGTCTGTTTGGATTGCAAATGGCTTTCCTTCCTAGTACAGTTGATGGTGTTAAATCTGAAGTCACTGAGCGGCAAAAACTTTATTCAGATCCAATGTCAAAATTAAGGGGACTCATGATTAGTCGCACGGCTAAGCCTGAAGAAGTGTTAATTGTTGAGGACGAAAATGGGAACATTGTTCGTGAAACTATGAAGGATAATGATGTTCTTGTCCAGTATAAGATAATGCGGGAGACATTAATCTACCTCTCACACCTTGATCATGAAGATACCGAAAAACAGATGTTGAGTAAGCTAAGCAAACAGTTGAGCGGGGAGGAATGGGCATGGAACAATCTAAACACTTTATGCTGGGCTATTGGGTCTATTTCTGGGTCCATGGTAGTAGAACAGGAAAACAGATTTCTCGTGATGGTTATCCGTGATTTGTTAAGTTTATGTGAAGTCGTCAAGGGAAAAGACAATAAAGCTGTTATTGCGAGCAACATCATGTACGTTGTTGGACAATATTCAAGATTCTTAAGAGCCCATTGGAAGTTTTTGAAGACAGTTGTCCATAAGCTGTTTGAATTTATGCATGAGACGCATCCTGGTGTTCAGGACATGGCTTGCGACACATTCTTAAAAATTGTTCAGAAGTGTAAGCGAAAATTTGTTATTGTTCAGGTTGGAGAAAGTGAGCCATTTGTGTCTGAACTTCTATCAGGCCTTGCTACAATCGTCGGAGATCTTCAACCTCATCAGATTCATACATTTTATGAATCTGTTGGTAGTATGATCCAGGCAGAATCAGATCCTCAGAAGAGGGGGGAATACCTCCAGAGGTTGATGGCTCTCCCGAATCAGAAATGGGCAGAAATTATAGGACAAGCACGTCAAAGTGCAGATATCCTCAAGGAACCAGATGTGATACGTACTGTGCTTAATATCCTCCAGACAAATACGCGCGTTGCAACTTCACTAGGAACATTCTTCCTGTCTCAAATTTCGTTGATCTTCTTGGATATGCTGAATGTTTACAGAATGTATAGTGAACTCGTTTCAAGCAGCATTGCTAATGGTGGCCCATACGCTTCGAGAACATCTCTTGTTAAACTTTTAAGGTCTGTTAAGAGGGAAATTCTTAAGCTGATAGAGACGTTTTTAGATAAAGCTGAAAACCAGCCACACATTGGAAAACAGTTTGTTCCACCAATGATGGATCAAGTACTTGGCGACTATGCAAGAAATGTTCCTGATGCAAGAGAATCAGAAGTCTTGTCACTCTTTGCGACAATAATCAACAAATACAAGGTTGTAATGCGAGATGAAGTTCCCCTCATATTTGAAGCTGTTTTCCAGTGCACATTGGAGATGATTACTAAGAATTTTGAAGATTACCCAGAGCACCGTCTCAAGTTTTTCTCGTTACTTCGTGCTATTGCTACATTTTGTTTCCGTGCGTTGATACAGTTGTCAAGTGAGCAACTGAAGCTAGTGATGGATTCAGTTATCTGGGCATTTAGGCATACTGAAAGAAATATCGCTGAAACTGGGCTCAATCTCTTGCTCGAGATGCTGAAAAACTTTCAGAAATCTGACTTTTGTAACAAATTCTACCAAACATACTTTCTGCAAATTGAGCAAGAAGTATTTGCTGTCTTGACCGATACCTTCCACAAGCCTGGGTTCAAGTTGCATGTGTTGGTGTTGCAGCACTTATTTAGCCTGGTTGAGAGCGGATCATTGGCAGAACCATTGTGGGATGCTGCAACGGTACCGCATCCTTATTCAAATAATGTCGCCTTTGTGCTTGAGTACACCACCAAGCTTCTAAGCTCATCATTCCCCAACATGACTACAACAGAGGTGACACAGTTTGTGAATGGACTTTACGAGTCGAGAAACGATGTTGGCAGATTTAAGGATAACATACGCGACTTCCTTATACAGTCCAAGGAATTTTCTGCTCAGGATAACAAAGATTTATATGCTGAGGAAGCTGCTGCCCAAATGGAGAGAGAGAGACAAAGAATGCTTTCGATTCCTGGACTTATAGCTCCCAGCGAAATTCAAGACGACATGGCCGATTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

1076

Amino Acids

123.19

Weight (kDa)

5.56

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 37 - 103 3.8e-16 Importin-beta N-terminal domain
Xpo1 PF08389 115 - 258 7.9e-43 Exportin 1-like protein
CRM1_repeat PF18777 337 - 372 3e-17 Chromosome region maintenance or exportin repeat
CRM1_repeat_2 PF18784 409 - 476 2.2e-29 CRM1 / Exportin repeat 2
CRM1_repeat_3 PF18787 490 - 539 1.6e-25 CRM1 / Exportin repeat 3
CRM1_C PF08767 713 - 1034 6.3e-134 CRM1 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03110 AT5G17020 AT5G17020
fragaria_vesca FvH4_7g33850 FvH4_7g33850
malus_domestica MD01G1234500.v1.1 MD07G1307000.v1.1
prunus_persica Prupe.2G324800_v2.0.a1 Prupe.2G324800_v2.0.a1
pyrus_communis pycom01g24280 pycom07g28000
rosa_chinensis RchiOBHm_Chr1g0383961
rosa_laevigata RLG00000026083
rosa_multiflora Rmu_sc0005139.1_g000024
rosa_roxburghii Rroxscaffold_4G00277100
rosa_rugosa Rorug01G0443900
rosa_samantha Rh1AG469400 Rh1BG427100 Rh1CG439900 Rh1DG459900
rosa_wichuraiana Rw1G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 233
AasI GACNNNNNNGTC 1 cut(s) 2028
AatII GACGTC 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 2911
AccB1I GGYRCC 1 cut(s) 2911
AccB7I CCANNNNNTGG 2 cut(s) 937, 2327
AccBSI CCGCTC 3 cut(s) 1225, 1467, 2874
AccII CGCG 4 cut(s) 1123, 2101, 2103, 3072
AciI CCGC 8 cut(s) 110, 124, 1019, 1225, 1384, 1467, 2874, 2915
AclWI GGATC 7 cut(s) 94, 712, 1238, 1927, 1943, 2364, 2884
AcoI YGGCCR 2 cut(s) 398, 3219
AcuI CTGAAG 5 cut(s) 197, 1083, 1233, 1314, 2645
AcyI GRCGYC 1 cut(s) 42
AfaI GTAC 8 cut(s) 190, 833, 1192, 1649, 2071, 2364, 2913, 2954
AfiI CCNNNNNNNGG 3 cut(s) 712, 937, 2327
AflII CTTAAG 2 cut(s) 1675, 2279
AhlI ACTAGT 1 cut(s) 449
AjiI CACGTC 1 cut(s) 2030
AjnI CCWGG 6 cut(s) 372, 1744, 1935, 2818, 2862, 3181
AjuI GAANNNNNNNTTGG 2 cut(s) 2748, 2780
Alw21I GWGCWC 2 cut(s) 2501, 2544
Alw26I GTCTC 8 cut(s) 15, 567, 1382, 1730, 2139, 2285, 2552, 3154
Alw44I GTGCAC 1 cut(s) 2497
AlwI GGATC 7 cut(s) 94, 712, 1238, 1927, 1943, 2364, 2884
AlwNI CAGNNNCTG 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 2705
AoxI GGCC 5 cut(s) 69, 398, 1861, 2218, 3219
ApaLI GTGCAC 1 cut(s) 2497
ApeKI GCWGC 8 cut(s) 5, 307, 440, 2202, 2848, 2903, 3137, 3140
AseI ATTAAT 1 cut(s) 1394
Asp700I GAANNNNTTC 1 cut(s) 3172
Asp718I GGTACC 1 cut(s) 2911
AspLEI GCGC 1 cut(s) 2103
AspS9I GGNCC 2 cut(s) 1530, 2219
AsuHPI GGTGA 2 cut(s) 1130, 3016
AvaI CYCGRG 1 cut(s) 2705
AvaII GGWCC 1 cut(s) 1530
AxyI CCTNAGG 1 cut(s) 888
BaeGI GKGCMC 1 cut(s) 2501
BaeI ACNNNNGTAYC 2 cut(s) 2594, 2627
BanI GGYRCC 1 cut(s) 2911
BanII GRGCYC 2 cut(s) 1684, 2694
BauI CACGAG 2 cut(s) 590, 1562
BbsI GAAGAC 1 cut(s) 1706
Bbv12I GWGCWC 2 cut(s) 2501, 2544
BbvCI CCTCAGC 1 cut(s) 3129
BbvI GCAGC 7 cut(s) 319, 427, 2214, 2860, 2890, 3124, 3127
BccI CCATC 6 cut(s) 266, 1193, 1561, 1978, 2347, 2629
BceAI ACGGC 1 cut(s) 1299
BciT130I CCWGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
BciVI GTATCC 1 cut(s) 683
BclI TGATCA 1 cut(s) 1414
BcoDI GTCTC 8 cut(s) 15, 567, 1382, 1730, 2139, 2285, 2552, 3154
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 5 cut(s) 450, 983, 1188, 2117, 2630
BfmI CTRYAG 1 cut(s) 173
BfrI CTTAAG 2 cut(s) 1675, 2279
BfuI GTATCC 1 cut(s) 683
BglII AGATCT 1 cut(s) 1882
BisI GCNGC 9 cut(s) 6, 308, 441, 1226, 2203, 2849, 2904, 3138, 3141
BlpI GCTNAGC 2 cut(s) 1287, 1451
BlsI GCNGC 9 cut(s) 7, 309, 442, 1227, 2204, 2850, 2905, 3139, 3142
BmcAI AGTACT 1 cut(s) 2364
Bme1390I CCNGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
Bme18I GGWCC 1 cut(s) 1530
BmeT110I CYCGRG 1 cut(s) 2705
BmgBI CACGTC 1 cut(s) 2030
BmgT120I GGNCC 2 cut(s) 1530, 2219
BmiI GGNNCC 3 cut(s) 1531, 2055, 2913
BmrFI CCNGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
BmrI ACTGGG 1 cut(s) 2697
BmsI GCATC 8 cut(s) 46, 335, 794, 1750, 2383, 2700, 2890, 2926
BmuI ACTGGG 1 cut(s) 2697
BoxI GACNNNNGTC 2 cut(s) 27, 1706
BpiI GAAGAC 1 cut(s) 1706
BplI GAGNNNNNCTC 2 cut(s) 2224, 2256
BpmI CTGGAG 3 cut(s) 734, 1958, 2072
Bpu10I CCTNAGC 2 cut(s) 3105, 3129
Bpu1102I GCTNAGC 2 cut(s) 1287, 1451
BpuEI CTTGAG 4 cut(s) 46, 2033, 2534, 2969
BsaAI YACGTR 2 cut(s) 641, 2069
BsaBI GATNNNNATC 1 cut(s) 1571
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 3 cut(s) 1533, 2819, 3090
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 3 cut(s) 712, 937, 2327
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 5 cut(s) 183, 907, 1369, 2494, 2692
Bse21I CCTNAGG 1 cut(s) 888
Bse3DI GCAATG 2 cut(s) 656, 2205
Bse8I GATNNNNATC 1 cut(s) 1571
BseBI CCWGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
BseDI CCNNGG 3 cut(s) 1533, 2819, 3090
BseGI GGATG 5 cut(s) 325, 369, 1741, 2905, 2917
BseJI GATNNNNATC 1 cut(s) 1571
BseLI CCNNNNNNNGG 3 cut(s) 712, 937, 2327
BseMI GCAATG 2 cut(s) 656, 2205
BseMII CTCAG 7 cut(s) 548, 627, 879, 1212, 1967, 3119, 3120
BseNI ACTGG 5 cut(s) 183, 907, 1369, 2494, 2692
BseSI GKGCMC 1 cut(s) 2501
BseXI GCAGC 7 cut(s) 319, 427, 2214, 2860, 2890, 3124, 3127
BseYI CCCAGC 2 cut(s) 1506, 3197
BsgI GTGCAG 4 cut(s) 326, 975, 1128, 2058
Bsh1236I CGCG 4 cut(s) 1123, 2101, 2103, 3072
BshFI GGCC 5 cut(s) 71, 400, 1863, 2220, 3221
BshNI GGYRCC 1 cut(s) 2911
BsiHKAI GWGCWC 2 cut(s) 2501, 2544
BsiHKCI CYCGRG 1 cut(s) 2705
BsiSI CCGG 2 cut(s) 84, 401
BslFI GGGAC 4 cut(s) 688, 815, 1132, 1278
BslI CCNNNNNNNGG 3 cut(s) 712, 937, 2327
BsmAI GTCTC 8 cut(s) 15, 567, 1382, 1730, 2139, 2285, 2552, 3154
BsmBI CGTCTC 3 cut(s) 1730, 2285, 2552
BsmFI GGGAC 4 cut(s) 688, 815, 1132, 1278
BsmI GAATGC 2 cut(s) 253, 3174
BsnI GGCC 5 cut(s) 71, 400, 1863, 2220, 3221
BsoBI CYCGRG 1 cut(s) 2705
Bsp1286I GDGCHC 4 cut(s) 1684, 2501, 2544, 2694
Bsp1407I TGTACA 1 cut(s) 831
Bsp1720I GCTNAGC 2 cut(s) 1287, 1451
Bsp19I CCATGG 1 cut(s) 1533
BspACI CCGC 8 cut(s) 110, 124, 1019, 1225, 1384, 1467, 2874, 2915
BspANI GGCC 5 cut(s) 71, 400, 1863, 2220, 3221
BspCNI CTCAG 7 cut(s) 547, 626, 880, 1213, 1966, 3118, 3121
BspFNI CGCG 4 cut(s) 1123, 2101, 2103, 3072
BspHI TCATGA 3 cut(s) 843, 1269, 1417
BspLI GGNNCC 3 cut(s) 1531, 2055, 2913
BspPI GGATC 7 cut(s) 94, 712, 1238, 1927, 1943, 2364, 2884
BspT107I GGYRCC 1 cut(s) 2911
BspTI CTTAAG 2 cut(s) 1675, 2279
BsrBI CCGCTC 3 cut(s) 1225, 1467, 2874
BsrDI GCAATG 2 cut(s) 656, 2205
BsrFI RCCGGY 1 cut(s) 400
BsrGI TGTACA 1 cut(s) 831
BsrI ACTGG 5 cut(s) 183, 907, 1369, 2494, 2692
BssAI RCCGGY 1 cut(s) 400
BssECI CCNNGG 3 cut(s) 1533, 2819, 3090
BssNI GRCGYC 1 cut(s) 42
BssSI CACGAG 2 cut(s) 590, 1562
BssT1I CCWWGG 2 cut(s) 1533, 3090
Bst2BI CACGAG 2 cut(s) 590, 1562
Bst2UI CCWGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
Bst6I CTCTTC 2 cut(s) 495, 1952
BstACI GRCGYC 1 cut(s) 42
BstAFI CTTAAG 2 cut(s) 1675, 2279
BstAPI GCANNNNNTGC 1 cut(s) 662
BstAUI TGTACA 1 cut(s) 831
BstBAI YACGTR 2 cut(s) 641, 2069
BstC8I GCNNGC 5 cut(s) 402, 663, 858, 1636, 1765
BstDSI CCRYGG 1 cut(s) 1533
BstF5I GGATG 5 cut(s) 325, 369, 1741, 2905, 2917
BstFNI CGCG 4 cut(s) 1123, 2101, 2103, 3072
BstHHI GCGC 1 cut(s) 2103
BstMAI GTCTC 8 cut(s) 15, 567, 1382, 1730, 2139, 2285, 2552, 3154
BstMWI GCNNNNNNNGC 7 cut(s) 662, 1631, 1738, 2626, 2710, 2776, 3134
BstNI CCWGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
BstNSI RCATGY 2 cut(s) 665, 2837
BstPAI GACNNNNGTC 2 cut(s) 27, 1706
BstSCI CCNGG 6 cut(s) 372, 1744, 1935, 2818, 2862, 3181
BstSFI CTRYAG 1 cut(s) 173
BstSLI GKGCMC 1 cut(s) 2501
BstSNI TACGTA 1 cut(s) 2069
BstUI CGCG 4 cut(s) 1123, 2101, 2103, 3072
BstV1I GCAGC 7 cut(s) 319, 427, 2214, 2860, 2890, 3124, 3127
BstV2I GAAGAC 1 cut(s) 1706
BstX2I RGATCY 5 cut(s) 86, 717, 1243, 1882, 1948
BstXI CCANNNNNNTGG 1 cut(s) 2819
BstYI RGATCY 5 cut(s) 86, 717, 1243, 1882, 1948
Bsu36I CCTNAGG 1 cut(s) 888
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 5 cut(s) 71, 400, 1863, 2220, 3221
BtgI CCRYGG 1 cut(s) 1533
BtrI CACGTC 1 cut(s) 2030
BtsCI GGATG 5 cut(s) 325, 369, 1741, 2905, 2917
BtsIMutI CAGTG 5 cut(s) 60, 941, 1059, 1218, 2501
Cac8I GCNNGC 5 cut(s) 402, 663, 858, 1636, 1765
CaiI CAGNNNCTG 1 cut(s) 220
CciI TCATGA 3 cut(s) 843, 1269, 1417
CfoI GCGC 1 cut(s) 2103
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 1530, 2219
CseI GACGC 2 cut(s) 1129, 1747
Csp6I GTAC 8 cut(s) 189, 832, 1191, 1648, 2070, 2363, 2912, 2953
CviQI GTAC 8 cut(s) 189, 832, 1191, 1648, 2070, 2363, 2912, 2953
DraI TTTAAA 2 cut(s) 873, 879
DrdI GACNNNNNNGTC 1 cut(s) 2028
DseDI GACNNNNNNGTC 1 cut(s) 2028
EaeI YGGCCR 2 cut(s) 398, 3219
Eam1104I CTCTTC 2 cut(s) 495, 1952
EarI CTCTTC 2 cut(s) 495, 1952
Eco105I TACGTA 1 cut(s) 2069
Eco130I CCWWGG 2 cut(s) 1533, 3090
Eco147I AGGCCT 2 cut(s) 71, 1863
Eco24I GRGCYC 2 cut(s) 1684, 2694
Eco32I GATATC 2 cut(s) 1031, 2044
Eco47I GGWCC 1 cut(s) 1530
Eco57I CTGAAG 5 cut(s) 197, 1083, 1233, 1314, 2645
Eco81I CCTNAGG 1 cut(s) 888
Eco88I CYCGRG 1 cut(s) 2705
EcoRI GAATTC 1 cut(s) 1093
EcoRII CCWGG 6 cut(s) 372, 1744, 1935, 2818, 2862, 3181
EcoRV GATATC 2 cut(s) 1031, 2044
EcoT14I CCWWGG 2 cut(s) 1533, 3090
EcoT22I ATGCAT 2 cut(s) 253, 1734
EcoT38I GRGCYC 2 cut(s) 1684, 2694
ErhI CCWWGG 2 cut(s) 1533, 3090
Esp3I CGTCTC 3 cut(s) 1730, 2285, 2552
FaqI GGGAC 4 cut(s) 688, 815, 1132, 1278
FauI CCCGC 4 cut(s) 117, 1012, 1377, 1460
FbaI TGATCA 1 cut(s) 1414
Fnu4HI GCNGC 9 cut(s) 6, 308, 441, 1226, 2203, 2849, 2904, 3138, 3141
FokI GGATG 5 cut(s) 332, 356, 1728, 2904, 2912
FriOI GRGCYC 2 cut(s) 1684, 2694
Fsp4HI GCNGC 9 cut(s) 6, 308, 441, 1226, 2203, 2849, 2904, 3138, 3141
FspBI CTAG 5 cut(s) 450, 983, 1188, 2117, 2630
GlaI GCGC 1 cut(s) 2102
GluI GCNGC 9 cut(s) 6, 308, 441, 1226, 2203, 2849, 2904, 3138, 3141
GsaI CCCAGC 2 cut(s) 1510, 3201
GsuI CTGGAG 3 cut(s) 734, 1958, 2072
HaeIII GGCC 5 cut(s) 71, 400, 1863, 2220, 3221
HapII CCGG 2 cut(s) 84, 401
HgaI GACGC 2 cut(s) 1129, 1747
HhaI GCGC 1 cut(s) 2103
Hin1I GRCGYC 1 cut(s) 42
Hin6I GCGC 1 cut(s) 2101
HinP1I GCGC 1 cut(s) 2101
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 2 cut(s) 415, 2963
HpaII CCGG 2 cut(s) 84, 401
HphI GGTGA 2 cut(s) 1130, 3016
Hpy166II GTNNAC 6 cut(s) 166, 355, 2173, 2189, 2499, 2955
Hpy8I GTNNAC 6 cut(s) 166, 355, 2173, 2189, 2499, 2955
Hpy99I CGWCG 2 cut(s) 47, 1880
HpyAV CCTTC 5 cut(s) 218, 221, 1193, 1342, 2818
HpyCH4IV ACGT 7 cut(s) 42, 268, 640, 1650, 2029, 2068, 2294
HpyF10VI GCNNNNNNNGC 7 cut(s) 662, 1631, 1738, 2626, 2710, 2776, 3134
HpySE526I ACGT 7 cut(s) 42, 268, 640, 1650, 2029, 2068, 2294
Hsp92I GRCGYC 1 cut(s) 42
HspAI GCGC 1 cut(s) 2101
KpnI GGTACC 1 cut(s) 2915
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
Ksp22I TGATCA 1 cut(s) 1414
LmnI GCTCC 1 cut(s) 3199
Lsp1109I GCAGC 7 cut(s) 319, 427, 2214, 2860, 2890, 3124, 3127
LweI GCATC 8 cut(s) 46, 335, 794, 1750, 2383, 2700, 2890, 2926
MaeI CTAG 5 cut(s) 450, 983, 1188, 2117, 2630
MaeII ACGT 7 cut(s) 42, 268, 640, 1650, 2029, 2068, 2294
MaeIII GTNAC 7 cut(s) 966, 1136, 1216, 2415, 2562, 2741, 3004
MbiI CCGCTC 3 cut(s) 1225, 1467, 2874
MflI RGATCY 5 cut(s) 86, 717, 1243, 1882, 1948
MhlI GDGCHC 4 cut(s) 1684, 2501, 2544, 2694
MlyI GAGTC 5 cut(s) 37, 526, 710, 1260, 3041
MmeI TCCRAC 4 cut(s) 1086, 1636, 1804, 1858
Mph1103I ATGCAT 2 cut(s) 253, 1734
MroNI GCCGGC 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 3172
MslI CAYNNNNRTG 3 cut(s) 766, 842, 1746
MspA1I CMGCKG 1 cut(s) 310
MspCI CTTAAG 2 cut(s) 1675, 2279
MspI CCGG 2 cut(s) 84, 401
MspR9I CCNGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
Mva1269I GAATGC 2 cut(s) 253, 3174
MvaI CCWGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
MvnI CGCG 4 cut(s) 1123, 2101, 2103, 3072
MwoI GCNNNNNNNGC 7 cut(s) 662, 1631, 1738, 2626, 2710, 2776, 3134
NaeI GCCGGC 1 cut(s) 402
NcoI CCATGG 1 cut(s) 1533
NgoMIV GCCGGC 1 cut(s) 400
NlaIV GGNNCC 3 cut(s) 1531, 2055, 2913
NmeAIII GCCGAG 1 cut(s) 34
NmuCI GTSAC 4 cut(s) 1136, 1216, 2415, 3004
NsiI ATGCAT 2 cut(s) 253, 1734
NspI RCATGY 2 cut(s) 665, 2837
PaeI GCATGC 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 2705
PagI TCATGA 3 cut(s) 843, 1269, 1417
PceI AGGCCT 2 cut(s) 71, 1863
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 3219
PctI GAATGC 2 cut(s) 253, 3174
PdiI GCCGGC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 3172
PflMI CCANNNNNTGG 2 cut(s) 937, 2327
PfoI TCCNGGA 1 cut(s) 3181
PkrI GCNGC 9 cut(s) 7, 309, 442, 1227, 2204, 2850, 2905, 3139, 3142
PleI GAGTC 5 cut(s) 36, 526, 709, 1260, 3040
PpsI GAGTC 5 cut(s) 36, 526, 709, 1260, 3040
Ppu21I YACGTR 2 cut(s) 641, 2069
PshAI GACNNNNGTC 2 cut(s) 27, 1706
PshBI ATTAAT 1 cut(s) 1394
PsiI TTATAA 1 cut(s) 233
Psp6I CCWGG 6 cut(s) 372, 1744, 1935, 2818, 2862, 3181
PspFI CCCAGC 2 cut(s) 1506, 3197
PspGI CCWGG 6 cut(s) 372, 1744, 1935, 2818, 2862, 3181
PspN4I GGNNCC 3 cut(s) 1531, 2055, 2913
PspPI GGNCC 2 cut(s) 1530, 2219
PstNI CAGNNNCTG 1 cut(s) 220
PsuI RGATCY 5 cut(s) 86, 717, 1243, 1882, 1948
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 8 cut(s) 190, 833, 1192, 1649, 2071, 2364, 2913, 2954
RsaNI GTAC 8 cut(s) 189, 832, 1191, 1648, 2070, 2363, 2912, 2953
RseI CAYNNNNRTG 3 cut(s) 766, 842, 1746
SatI GCNGC 9 cut(s) 6, 308, 441, 1226, 2203, 2849, 2904, 3138, 3141
Sau96I GGNCC 2 cut(s) 1530, 2219
ScaI AGTACT 1 cut(s) 2364
SchI GAGTC 5 cut(s) 37, 526, 710, 1260, 3041
ScrFI CCNGG 6 cut(s) 374, 1746, 1937, 2820, 2864, 3183
SduI GDGCHC 4 cut(s) 1684, 2501, 2544, 2694
SfaNI GCATC 8 cut(s) 46, 335, 794, 1750, 2383, 2700, 2890, 2926
SfcI CTRYAG 1 cut(s) 173
Sfr274I CTCGAG 1 cut(s) 2705
SinI GGWCC 1 cut(s) 1530
SlaI CTCGAG 1 cut(s) 2705
SmiI ATTTAAAT 1 cut(s) 879
SmiMI CAYNNNNRTG 3 cut(s) 766, 842, 1746
SmlI CTYRAG 7 cut(s) 25, 1675, 2048, 2279, 2549, 2705, 2948
SmoI CTYRAG 7 cut(s) 25, 1675, 2048, 2279, 2549, 2705, 2948
SnaBI TACGTA 1 cut(s) 2069
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 1 cut(s) 665
SseBI AGGCCT 2 cut(s) 71, 1863
SsiI CCGC 8 cut(s) 110, 124, 1019, 1225, 1384, 1467, 2874, 2915
SspI AATATT 2 cut(s) 1003, 1664
SspMI CTAG 5 cut(s) 450, 983, 1188, 2117, 2630
StuI AGGCCT 2 cut(s) 71, 1863
StyD4I CCNGG 6 cut(s) 372, 1744, 1935, 2818, 2862, 3181
StyI CCWWGG 2 cut(s) 1533, 3090
SwaI ATTTAAAT 1 cut(s) 879
TaiI ACGT 7 cut(s) 45, 271, 643, 1653, 2032, 2071, 2297
TaqI TCGA 5 cut(s) 54, 2231, 2706, 3035, 3176
TaqII GACCGA 1 cut(s) 2816
TatI WGTACW 4 cut(s) 831, 1190, 2362, 2952
TauI GCSGC 1 cut(s) 1228
TscAI CASTG 5 cut(s) 67, 948, 1066, 1225, 2501
TseFI GTSAC 4 cut(s) 1136, 1216, 2415, 3004
TseI GCWGC 8 cut(s) 5, 307, 440, 2202, 2848, 2903, 3137, 3140
Tsp45I GTSAC 4 cut(s) 1136, 1216, 2415, 3004
TspGWI ACGGA 4 cut(s) 353, 672, 1565, 2582
TspRI CASTG 5 cut(s) 67, 948, 1066, 1225, 2501
Van91I CCANNNNNTGG 2 cut(s) 937, 2327
Vha464I CTTAAG 2 cut(s) 1675, 2279
VneI GTGCAC 1 cut(s) 2497
VpaK11BI GGWCC 1 cut(s) 1530
VspI ATTAAT 1 cut(s) 1394
XceI RCATGY 2 cut(s) 665, 2837
XcmI CCANNNNNNNNNTGG 1 cut(s) 2324
XhoI CTCGAG 1 cut(s) 2705
XmnI GAANNNNTTC 1 cut(s) 3172
XspI CTAG 5 cut(s) 450, 983, 1188, 2117, 2630
ZraI GACGTC 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 2364
Zsp2I ATGCAT 2 cut(s) 253, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.