FvH4_7g33850

Chromosome region maintenance protein 1 exportin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0009963
Physical Location & Seq
Reverse (-)
23989192 .. 23999004
9813 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g33850.t2

Sequence Viewer

Length: 3231 bp
ATGGCGGCCGAGAAGCTTCGGGATTTGAGCCAGCCTATCGACGTTGGCCTGCTCGATGCCACCGTCTCGGCCTTTTACGGCACCGGATCTAAGGAGGAGAGGGCAGCTGCAGACCTCATATTGCGGGACTTGCAAAACAATCCAGATATGTGGCTCCAAGTGGTGCACATTTTGCAGAGCACAAGTAACCTCAATACCAAGTTCTTTGCTTTGCAGGTCCTAGAAGGGGTTATCAAGTATAGGTGGAATGCATTGCCCGTTGAACAGAGAGATGGAATGAAAAATTATATCTCTGATGTCATTGTGCAGCTTTCAAGTAATGAAGCGTCTTTTAGAAACGAAAGGCTGTATGTCAACAAACTCAATATCATATTGGTTCAGATTTTGAAGCATGATTGGCCTGCTAAATGGCGAAGCTTTGTTCCAGATCTTGTTTCAGCAGCTAAAACTAGTGAAACAATCTGCGAGAATTGTATGGCTATATTGAAACTTTTAAGTGAAGAGGTCTTTGATTTCTCAAGGGGAGAAATGACTCAGGTGAAGATAAAAGAGCTTAAACAATCATTGAACAGCGAGTTTCAACTTATTCATGAGTTATGCTTGTACGTACTGTCTGTATCTCAAAGAACTGAGCTTATGCGTGCAACACTATCGACATTACATGCTTTCCTCTCATGGATTCCCTTGGGATATATCTTTGAGTCCCCGTTGCTGGAAACCCTTCTGAAGTTTTTTCCCATGCCTCAATATCGGAATCTCGCGCTTCAATGTTTAACGGAGGTTGCAGCACTTACATTCGGTGACTTCTACAATACTCAGTATGTTAAAATGTATATGATATTCATGGTGCAGTTACAGACTATTCTCCCAACTACCACAAACATTCCTGAGGCTTATGCAAATGGATCCAGCGAGGAACAGGCATTTATTCAGAATCTGGCACTGTTCTTTACTTCGTTTTTCAAGTCTCATATTCGAGTTCTCGAAACGAGCCAAGAAAATGTCAATGCGTTGCTAATGGGTCTTGAATATCTTATAAGCATCTCATATGTTGATGACACTGAAGTTTTTAAGGTTTGCTTAGACTATTGGAATTCCTTGGTTTTGGAACTATATGAGGCGCATAATAATTTGGATAACCCTGCAGCAACAGCTAACATGATGGGACTGCAGATGCCTATGGTTCCTGGTATGGTTGATGGCCTTGGCTCTCAAATTATGCAGAGGAGGCAGATATATGTTAGCATCATGTCAAAGCTGAGGCTGCTCATGATCTGTCGAATGGCAAAGCCAGAAGAGGTTCTCATTGTTGAAGATGAGAATGGCAACATTGTTCGTGAGACCCTCAAGGACAATGATGTTCTTGTCCAATATAAGATCATGAGGGAAACATTAATATATTTGGCACACCTTGACCATGATGACACAGAGAAGCAGATGCTAAAGAAGTTGAGCAAACAACTGAGTGGCGAGGACTGGGCATGGAACAACTTAAACACTTTATGCTGGGCAATAGGGTCTATATCTGGTTCCATGGCGGAAGAACAGGAAAACAGATTTTTGGTGATGGTGATTCGTGACTTACTGAATTTATGCGAAATCATAAAAGGGAAAGATAACAAAGCAGTGATTGCAAGCAACATTATGTATGTTGTTGGGCAGTACCCAAGGTTTTTAAGAGCTCATTGGAAGTTCTTAAAGACCGTTGTGAATAAGTTGTTTGAATTTATGCATGAAACACATCCCGGAGTTCAGGACATGGCGTGTGACACATTCCTCAAAATTGTTCAGAAGTGCAAGCGTAAATTTGTCATTGTACAGGTTGGGGAAAGCGAACCATTTGTGTCTGAACTCTTGACAGGCCTCCCTACAACTGTTGGTGATCTTGAGCCTCACCAGATTCATACTTTTTATGAAGCGGTCGGTCATATGATTCAAGCAGAATCTGATCCCCAGAAAAGGGATGAATATCTACACAGATTGATGAGTCTCCCAAATCAGAAATGGGCTGAGATCATTGGGCAAGCGCGCCAAAGTGTTGATGTTCTCAAGGATCAGGAAGTTATTCGAACTGTGCTTAATATATTACAGACAAATACAAGTGTCGCCAGCTCTCTTGGAACATTTTTCCTAACCCAGATGTCATTGATCTTTTTGGACATGCTTAATGTCTACAGGATGTACAGTGAGCTTGTATCTAGTACCATTGCTGAAGGGGGGCCTTATGCTTCTAAAACATCCTTTGTGAAACTTTTAAGGTCGGTTAAGAGGGAGACTCTCAAACTGATCGAGACATTCCTGGACAAGGCTGAAGACCAATCACATATAGGAAAACAAATTGTGCCTCCGATGTTGGATCCTGTCCTTGGTGACTATGCCAGGAATTTGCCTGATGCTAGAGAGTCAGAAGTTTTATCGCTTTTTGCCACAATTATTAACAAGTACAAAATTGAGATGATAGATGATGTGCCTCGGATATTCGAAGCTGTTTTCCAGTGCACATTGGTGATGATTACAAAAAACTTTGAAGATTATCCAGAGCATCGCCTGAAGTTCTTTTCCTTACTTCGTGCCATTGCAGCACACTGTTTTCCTGCGTTGATTAGATTATCAAGTCAGCAACTTAAGCTTGTCATGGATTCAATTATTTGGGCATTTCGGCACACAGAAAGAAATATTGCTGAAACTGGGCTGAACCTGTTATTGGAGATGCTGAAGAACTTTCAGAAATCGGAGTTCTGTAATCAATTTTTCCGGACATACTATTTGCAAATCGAGCAAGAAATATTTGCTGTCCTGACAGACACTTTTCATAAGCCTGGATTCAAGTTGCATGTCTTGGTGCTCCAGCAGCTGTTTTGCCTTGTAGAAAGTGGTCCAGTGACGGAGCCGCTGTGGGATGTTGCAGTGGCTCCTTATCAATACCAAAATAATGCAATGTATGTTCGGGACTTCACCGTCAAGCTTTTGAGTGAATCCTTCCCCAACATGACTTCCATTGAGGTCACCCAATTTGTGAATGGGCTATTTGAGTCTAAGAATGACTTCCCCACATTTAAGGATCACATCCGAGACTTTCTAGTGCAATCTAAAGAGTTTTCAGCACAGGACAACAAAGATCTTTATGCAGAGGAGGCTGCTGCACAAAGAGAAAGAGAACGGCAACGGATGCTTTCTATTCCTGGGCTCGTTGCCCCTAATGAGATCCAAGATGAAATGGCTGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

1077

Amino Acids

123.75

Weight (kDa)

5.36

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xpo1 PF08389 23 - 166 9.2e-43 Exportin 1-like protein
CRM1_repeat PF18777 245 - 280 9e-18 Chromosome region maintenance or exportin repeat
CRM1_repeat_2 PF18784 317 - 384 1.2e-30 CRM1 / Exportin repeat 2
CRM1_repeat_3 PF18787 398 - 447 2.8e-26 CRM1 / Exportin repeat 3
CRM1_C PF08767 621 - 942 9.1e-131 CRM1 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03110 AT5G17020 AT5G17020
fragaria_vesca FvH4_7g33850 FvH4_7g33850
malus_domestica MD01G1234500.v1.1 MD07G1307000.v1.1
prunus_persica Prupe.2G324800_v2.0.a1 Prupe.2G324800_v2.0.a1
pyrus_communis pycom01g24280 pycom07g28000
rosa_chinensis RchiOBHm_Chr1g0383961
rosa_laevigata RLG00000026083
rosa_multiflora Rmu_sc0005139.1_g000024
rosa_roxburghii Rroxscaffold_4G00277100
rosa_rugosa Rorug01G0443900
rosa_samantha Rh1AG469400 Rh1BG427100 Rh1CG439900 Rh1DG459900
rosa_wichuraiana Rw1G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
AasI GACNNNNNNGTC 1 cut(s) 2957
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 80
AccI GTMKAC 1 cut(s) 2172
AccII CGCG 2 cut(s) 761, 2029
AccIII TCCGGA 1 cut(s) 2754
AciI CCGC 5 cut(s) 5, 124, 1538, 1919, 2891
AclWI GGATC 9 cut(s) 94, 900, 913, 1943, 2061, 2351, 2364, 3069, 3199
AcoI YGGCCR 1 cut(s) 6
AcsI RAATTY 5 cut(s) 1093, 1588, 1724, 1805, 2383
AcuI CTGAAG 6 cut(s) 746, 1083, 2232, 2331, 2570, 2735
AfaI GTAC 7 cut(s) 605, 609, 1664, 1818, 2183, 2203, 2444
AfiI CCNNNNNNNGG 7 cut(s) 226, 712, 1959, 1960, 2305, 2366, 2704
AflII CTTAAG 1 cut(s) 2624
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 5 cut(s) 1186, 2298, 2378, 2818, 3181
AjuI GAANNNNNNNTTGG 2 cut(s) 2687, 2719
AleI CACNNNNGTG 1 cut(s) 2504
Alw21I GWGCWC 5 cut(s) 168, 182, 1684, 2501, 2847
Alw26I GTCTC 7 cut(s) 70, 972, 1334, 1994, 2267, 2285, 3066
Alw44I GTGCAC 2 cut(s) 164, 2497
AlwI GGATC 9 cut(s) 94, 900, 913, 1943, 2061, 2351, 2364, 3069, 3199
AlwNI CAGNNNCTG 3 cut(s) 937, 1946, 2854
Aor13HI TCCGGA 1 cut(s) 2754
AoxI GGCC 7 cut(s) 6, 46, 69, 398, 1201, 1861, 2219
ApaLI GTGCAC 2 cut(s) 164, 2497
ApoI RAATTY 5 cut(s) 1093, 1588, 1724, 1805, 2383
ArsI GACNNNNNNTTYG 2 cut(s) 2749, 2781
AseI ATTAAT 1 cut(s) 1394
Asp700I GAANNNNTTC 4 cut(s) 720, 1299, 2064, 3044
AspLEI GCGC 4 cut(s) 763, 1123, 2029, 2031
AspS9I GGNCC 3 cut(s) 217, 2219, 2876
AsuC2I CCSGG 1 cut(s) 1746
AsuII TTCGAA 2 cut(s) 2068, 2481
AvaII GGWCC 2 cut(s) 217, 2876
AxyI CCTNAGG 1 cut(s) 888
BaeGI GKGCMC 2 cut(s) 168, 2501
BamHI GGATCC 2 cut(s) 905, 2356
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 1684, 3189
BbsI GAAGAC 1 cut(s) 2319
Bbv12I GWGCWC 5 cut(s) 168, 182, 1684, 2501, 2847
BbvCI CCTCAGC 1 cut(s) 1259
BccI CCATC 4 cut(s) 266, 1156, 1193, 1561
BceAI ACGGC 2 cut(s) 94, 3176
BcgI CGANNNNNNTGC 2 cut(s) 633, 667
BciT130I CCWGG 5 cut(s) 1188, 2300, 2380, 2820, 3183
BcnI CCSGG 1 cut(s) 1746
BcoDI GTCTC 7 cut(s) 70, 972, 1334, 1994, 2267, 2285, 3066
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
BfmI CTRYAG 4 cut(s) 108, 1143, 1169, 2173
BfrI CTTAAG 1 cut(s) 2624
BfuAI ACCTGC 1 cut(s) 205
BglII AGATCT 2 cut(s) 427, 3118
Bme1390I CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
Bme18I GGWCC 2 cut(s) 217, 2876
BmgT120I GGNCC 3 cut(s) 217, 2219, 2876
BmiI GGNNCC 9 cut(s) 82, 155, 907, 1185, 1531, 2220, 2358, 2889, 2913
BmrFI CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
BmrI ACTGGG 2 cut(s) 1486, 2697
BmsI GCATC 9 cut(s) 46, 1050, 1164, 1254, 1428, 2383, 2551, 2700, 3159
BmuI ACTGGG 2 cut(s) 1486, 2697
BpiI GAAGAC 1 cut(s) 2319
BplI GAGNNNNNCTC 2 cut(s) 2260, 2292
BpmI CTGGAG 1 cut(s) 2831
Bpu10I CCTNAGC 1 cut(s) 1259
Bpu14I TTCGAA 2 cut(s) 2068, 2481
BpuEI CTTGAG 4 cut(s) 502, 1331, 1907, 2033
BpuMI CCSGG 1 cut(s) 1746
BsaAI YACGTR 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 1968
BsaI GGTCTC 1 cut(s) 1334
BsaJI CCNNGG 8 cut(s) 684, 1098, 1204, 1533, 1667, 2365, 2471, 3182
BsaWI WCCGGW 2 cut(s) 83, 2754
BsaXI ACNNNNNCTCC 2 cut(s) 2879, 2909
Bsc4I CCNNNNNNNGG 7 cut(s) 226, 712, 1959, 1960, 2305, 2366, 2704
Bse1I ACTGG 4 cut(s) 1481, 2494, 2692, 2879
Bse21I CCTNAGG 1 cut(s) 888
Bse3DI GCAATG 4 cut(s) 251, 2205, 2574, 2943
Bse8I GATNNNNATC 1 cut(s) 1968
BseAI TCCGGA 1 cut(s) 2754
BseBI CCWGG 5 cut(s) 1188, 2300, 2380, 2820, 3183
BseDI CCNNGG 8 cut(s) 684, 1098, 1204, 1533, 1667, 2365, 2471, 3182
BseGI GGATG 7 cut(s) 1741, 1969, 2184, 2237, 2905, 3066, 3174
BseJI GATNNNNATC 1 cut(s) 1968
BseLI CCNNNNNNNGG 7 cut(s) 226, 712, 1959, 1960, 2305, 2366, 2704
BseMI GCAATG 4 cut(s) 251, 2205, 2574, 2943
BseMII CTCAG 7 cut(s) 548, 621, 830, 879, 1250, 1454, 2001
BseNI ACTGG 4 cut(s) 1481, 2494, 2692, 2879
BsePI GCGCGC 1 cut(s) 2027
BseRI GAGGAG 3 cut(s) 110, 1240, 3146
BseSI GKGCMC 2 cut(s) 168, 2501
BseX3I CGGCCG 1 cut(s) 6
BseYI CCCAGC 1 cut(s) 1506
BsgI GTGCAG 3 cut(s) 326, 869, 3126
Bsh1236I CGCG 2 cut(s) 761, 2029
Bsh1285I CGRYCG 2 cut(s) 9, 1923
BshFI GGCC 7 cut(s) 8, 48, 71, 400, 1203, 1863, 2221
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 2 cut(s) 9, 1923
BsiHKAI GWGCWC 5 cut(s) 168, 182, 1684, 2501, 2847
BsiSI CCGG 3 cut(s) 84, 1746, 2755
BslFI GGGAC 4 cut(s) 140, 688, 1179, 2963
BslI CCNNNNNNNGG 7 cut(s) 226, 712, 1959, 1960, 2305, 2366, 2704
BsmAI GTCTC 7 cut(s) 70, 972, 1334, 1994, 2267, 2285, 3066
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 4 cut(s) 140, 688, 1179, 2963
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 7 cut(s) 8, 48, 71, 400, 1203, 1863, 2221
Bso31I GGTCTC 1 cut(s) 1334
Bsp119I TTCGAA 2 cut(s) 2068, 2481
Bsp1286I GDGCHC 6 cut(s) 168, 182, 1684, 2501, 2847, 3189
Bsp13I TCCGGA 1 cut(s) 2754
Bsp1407I TGTACA 2 cut(s) 1816, 2181
Bsp19I CCATGG 1 cut(s) 1533
BspACI CCGC 5 cut(s) 5, 124, 1538, 1919, 2891
BspANI GGCC 7 cut(s) 8, 48, 71, 400, 1203, 1863, 2221
BspCNI CTCAG 7 cut(s) 547, 622, 829, 880, 1251, 1455, 2002
BspEI TCCGGA 1 cut(s) 2754
BspFNI CGCG 2 cut(s) 761, 2029
BspHI TCATGA 3 cut(s) 589, 1269, 1380
BspLI GGNNCC 9 cut(s) 82, 155, 907, 1185, 1531, 2220, 2358, 2889, 2913
BspMAI CTGCAG 3 cut(s) 112, 1147, 1173
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 9 cut(s) 94, 900, 913, 1943, 2061, 2351, 2364, 3069, 3199
BspT104I TTCGAA 2 cut(s) 2068, 2481
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 2624
BspTNI GGTCTC 1 cut(s) 1334
BsrDI GCAATG 4 cut(s) 251, 2205, 2574, 2943
BsrGI TGTACA 2 cut(s) 1816, 2181
BsrI ACTGG 4 cut(s) 1481, 2494, 2692, 2879
BssECI CCNNGG 8 cut(s) 684, 1098, 1204, 1533, 1667, 2365, 2471, 3182
BssHII GCGCGC 1 cut(s) 2027
BssT1I CCWWGG 6 cut(s) 684, 1098, 1204, 1533, 1667, 2365
Bst2UI CCWGG 5 cut(s) 1188, 2300, 2380, 2820, 3183
Bst4CI ACNGT 9 cut(s) 64, 612, 945, 1705, 1876, 2074, 2186, 2588, 2959
Bst6I CTCTTC 2 cut(s) 495, 1290
BstAFI CTTAAG 1 cut(s) 2624
BstAPI GCANNNNNTGC 3 cut(s) 172, 1631, 3169
BstAUI TGTACA 2 cut(s) 1816, 2181
BstBAI YACGTR 1 cut(s) 607
BstBI TTCGAA 2 cut(s) 2068, 2481
BstC8I GCNNGC 9 cut(s) 32, 50, 402, 642, 1636, 1799, 2025, 2029, 2110
BstDSI CCRYGG 1 cut(s) 1533
BstEII GGTNACC 1 cut(s) 3004
BstENI CCTNNNNNAGG 1 cut(s) 2303
BstF5I GGATG 7 cut(s) 1741, 1969, 2184, 2237, 2905, 3066, 3174
BstFNI CGCG 2 cut(s) 761, 2029
BstHHI GCGC 4 cut(s) 763, 1123, 2029, 2031
BstMAI GTCTC 7 cut(s) 70, 972, 1334, 1994, 2267, 2285, 3066
BstMCI CGRYCG 2 cut(s) 9, 1923
BstNI CCWGG 5 cut(s) 1188, 2300, 2380, 2820, 3183
BstNSI RCATGY 3 cut(s) 665, 2164, 2837
BstPI GGTNACC 1 cut(s) 3004
BstSCI CCNGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
BstSFI CTRYAG 4 cut(s) 108, 1143, 1169, 2173
BstSLI GKGCMC 2 cut(s) 168, 2501
BstSNI TACGTA 1 cut(s) 607
BstUI CGCG 2 cut(s) 761, 2029
BstV2I GAAGAC 1 cut(s) 2319
BstX2I RGATCY 6 cut(s) 86, 427, 905, 2356, 3118, 3204
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 6 cut(s) 86, 427, 905, 2356, 3118, 3204
BstZI CGGCCG 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 888
BsuRI GGCC 7 cut(s) 8, 48, 71, 400, 1203, 1863, 2221
BtgI CCRYGG 1 cut(s) 1533
BtgZI GCGATG 1 cut(s) 2528
BtsCI GGATG 7 cut(s) 1741, 1969, 2184, 2237, 2905, 3066, 3174
BtsI GCAGTG 2 cut(s) 1632, 2913
BtsIMutI CAGTG 8 cut(s) 941, 1059, 1632, 2191, 2501, 2584, 2886, 2913
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 9 cut(s) 32, 50, 402, 642, 1636, 1799, 2025, 2029, 2110
CaiI CAGNNNCTG 3 cut(s) 937, 1946, 2854
CciI TCATGA 3 cut(s) 589, 1269, 1380
CfoI GCGC 4 cut(s) 763, 1123, 2029, 2031
Cfr13I GGNCC 3 cut(s) 217, 2219, 2876
CseI GACGC 1 cut(s) 315
Csp6I GTAC 7 cut(s) 604, 608, 1663, 1817, 2182, 2202, 2443
CviQI GTAC 7 cut(s) 604, 608, 1663, 1817, 2182, 2202, 2443
DrdI GACNNNNNNGTC 1 cut(s) 2957
DseDI GACNNNNNNGTC 1 cut(s) 2957
EaeI YGGCCR 1 cut(s) 6
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 495, 1290
EarI CTCTTC 2 cut(s) 495, 1290
EciI GGCGGA 1 cut(s) 1553
Ecl136II GAGCTC 1 cut(s) 1682
EclXI CGGCCG 1 cut(s) 6
Eco105I TACGTA 1 cut(s) 607
Eco130I CCWWGG 6 cut(s) 684, 1098, 1204, 1533, 1667, 2365
Eco147I AGGCCT 1 cut(s) 1863
Eco24I GRGCYC 2 cut(s) 1684, 3189
Eco31I GGTCTC 1 cut(s) 1334
Eco47I GGWCC 2 cut(s) 217, 2876
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 1682
Eco57I CTGAAG 6 cut(s) 746, 1083, 2232, 2331, 2570, 2735
Eco81I CCTNAGG 1 cut(s) 888
Eco91I GGTNACC 1 cut(s) 3004
EcoICRI GAGCTC 1 cut(s) 1682
EcoNI CCTNNNNNAGG 1 cut(s) 2303
EcoO109I RGGNCCY 2 cut(s) 217, 2219
EcoO65I GGTNACC 1 cut(s) 3004
EcoRI GAATTC 1 cut(s) 1093
EcoRII CCWGG 5 cut(s) 1186, 2298, 2378, 2818, 3181
EcoT14I CCWWGG 6 cut(s) 684, 1098, 1204, 1533, 1667, 2365
EcoT22I ATGCAT 2 cut(s) 253, 1734
EcoT38I GRGCYC 2 cut(s) 1684, 3189
ErhI CCWWGG 6 cut(s) 684, 1098, 1204, 1533, 1667, 2365
Esp3I CGTCTC 1 cut(s) 70
FalI AAGNNNNNCTT 4 cut(s) 1064, 1096, 3029, 3061
FaqI GGGAC 4 cut(s) 140, 688, 1179, 2963
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 2 cut(s) 1048, 1929
FblI GTMKAC 1 cut(s) 2172
FokI GGATG 7 cut(s) 1728, 1976, 2191, 2224, 2912, 3053, 3181
FriOI GRGCYC 2 cut(s) 1684, 3189
FspBI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
GlaI GCGC 4 cut(s) 762, 1122, 2028, 2030
GsaI CCCAGC 1 cut(s) 1510
GsuI CTGGAG 1 cut(s) 2831
HaeIII GGCC 7 cut(s) 8, 48, 71, 400, 1203, 1863, 2221
HapII CCGG 3 cut(s) 84, 1746, 2755
HgaI GACGC 1 cut(s) 315
HhaI GCGC 4 cut(s) 763, 1123, 2029, 2031
Hin6I GCGC 4 cut(s) 761, 1121, 2027, 2029
HinP1I GCGC 4 cut(s) 761, 1121, 2027, 2029
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 4 cut(s) 14, 415, 2627, 2963
HpaII CCGG 3 cut(s) 84, 1746, 2755
Hpy166II GTNNAC 4 cut(s) 166, 355, 2173, 2499
Hpy8I GTNNAC 4 cut(s) 166, 355, 2173, 2499
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 4 cut(s) 218, 731, 2207, 2989
HpyCH4III ACNGT 9 cut(s) 64, 612, 945, 1705, 1876, 2074, 2186, 2588, 2959
HpyCH4IV ACGT 2 cut(s) 42, 606
HpySE526I ACGT 2 cut(s) 42, 606
HspAI GCGC 4 cut(s) 761, 1121, 2027, 2029
Kpn2I TCCGGA 1 cut(s) 2754
LmnI GCTCC 4 cut(s) 159, 2850, 2887, 2917
LweI GCATC 9 cut(s) 46, 1050, 1164, 1254, 1428, 2383, 2551, 2700, 3159
MaeI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
MaeII ACGT 2 cut(s) 42, 606
MaeIII GTNAC 8 cut(s) 185, 800, 852, 1577, 1766, 2369, 2881, 3004
MboII GAAGA 8 cut(s) 512, 553, 1307, 1325, 1553, 2324, 2540, 2728
MflI RGATCY 6 cut(s) 86, 427, 905, 2356, 3118, 3204
MhlI GDGCHC 6 cut(s) 168, 182, 1684, 2501, 2847, 3189
MlyI GAGTC 6 cut(s) 526, 710, 1996, 2269, 2411, 3041
MmeI TCCRAC 1 cut(s) 2334
Mph1103I ATGCAT 2 cut(s) 253, 1734
MroI TCCGGA 1 cut(s) 2754
MroXI GAANNNNTTC 4 cut(s) 720, 1299, 2064, 3044
MslI CAYNNNNRTG 1 cut(s) 2504
MspA1I CMGCKG 3 cut(s) 107, 2854, 2893
MspCI CTTAAG 1 cut(s) 2624
MspI CCGG 3 cut(s) 84, 1746, 2755
MspR9I CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 5 cut(s) 1188, 2300, 2380, 2820, 3183
MvnI CGCG 2 cut(s) 761, 2029
NciI CCSGG 1 cut(s) 1746
NcoI CCATGG 1 cut(s) 1533
NdeI CATATG 2 cut(s) 1048, 1929
NlaIV GGNNCC 9 cut(s) 82, 155, 907, 1185, 1531, 2220, 2358, 2889, 2913
NmeAIII GCCGAG 2 cut(s) 34, 47
NmuCI GTSAC 6 cut(s) 800, 1577, 1766, 2369, 2881, 3004
NsiI ATGCAT 2 cut(s) 253, 1734
NspI RCATGY 3 cut(s) 665, 2164, 2837
NspV TTCGAA 2 cut(s) 2068, 2481
OliI CACNNNNGTG 1 cut(s) 2504
PagI TCATGA 3 cut(s) 589, 1269, 1380
PauI GCGCGC 1 cut(s) 2027
PceI AGGCCT 1 cut(s) 1863
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 4 cut(s) 720, 1299, 2064, 3044
PfoI TCCNGGA 2 cut(s) 1744, 2298
PleI GAGTC 6 cut(s) 526, 709, 1995, 2269, 2410, 3040
PpsI GAGTC 6 cut(s) 526, 709, 1995, 2269, 2410, 3040
Ppu21I YACGTR 1 cut(s) 607
PpuMI RGGWCCY 1 cut(s) 217
PshBI ATTAAT 1 cut(s) 1394
PsiI TTATAA 1 cut(s) 1037
Psp124BI GAGCTC 1 cut(s) 1684
Psp5II RGGWCCY 1 cut(s) 217
Psp6I CCWGG 5 cut(s) 1186, 2298, 2378, 2818, 3181
PspEI GGTNACC 1 cut(s) 3004
PspFI CCCAGC 1 cut(s) 1506
PspGI CCWGG 5 cut(s) 1186, 2298, 2378, 2818, 3181
PspN4I GGNNCC 9 cut(s) 82, 155, 907, 1185, 1531, 2220, 2358, 2889, 2913
PspPI GGNCC 3 cut(s) 217, 2219, 2876
PspPPI RGGWCCY 1 cut(s) 217
PstI CTGCAG 3 cut(s) 112, 1147, 1173
PstNI CAGNNNCTG 3 cut(s) 937, 1946, 2854
PsuI RGATCY 6 cut(s) 86, 427, 905, 2356, 3118, 3204
PteI GCGCGC 1 cut(s) 2027
PvuII CAGCTG 2 cut(s) 107, 2854
RsaI GTAC 7 cut(s) 605, 609, 1664, 1818, 2183, 2203, 2444
RsaNI GTAC 7 cut(s) 604, 608, 1663, 1817, 2182, 2202, 2443
RseI CAYNNNNRTG 1 cut(s) 2504
SacI GAGCTC 1 cut(s) 1684
Sau96I GGNCC 3 cut(s) 217, 2219, 2876
SchI GAGTC 6 cut(s) 526, 710, 1996, 2269, 2411, 3041
ScrFI CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
SduI GDGCHC 6 cut(s) 168, 182, 1684, 2501, 2847, 3189
SfaNI GCATC 9 cut(s) 46, 1050, 1164, 1254, 1428, 2383, 2551, 2700, 3159
SfcI CTRYAG 4 cut(s) 108, 1143, 1169, 2173
SfuI TTCGAA 2 cut(s) 2068, 2481
SinI GGWCC 2 cut(s) 217, 2876
SmiMI CAYNNNNRTG 1 cut(s) 2504
SmlI CTYRAG 5 cut(s) 517, 1346, 1886, 2048, 2624
SmoI CTYRAG 5 cut(s) 517, 1346, 1886, 2048, 2624
SnaBI TACGTA 1 cut(s) 607
SpeI ACTAGT 1 cut(s) 449
SseBI AGGCCT 1 cut(s) 1863
SsiI CCGC 5 cut(s) 5, 124, 1538, 1919, 2891
SspI AATATT 2 cut(s) 2677, 2787
SspMI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
SstI GAGCTC 1 cut(s) 1684
StuI AGGCCT 1 cut(s) 1863
StyD4I CCNGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
StyI CCWWGG 6 cut(s) 684, 1098, 1204, 1533, 1667, 2365
TaaI ACNGT 9 cut(s) 64, 612, 945, 1705, 1876, 2074, 2186, 2588, 2959
TaiI ACGT 2 cut(s) 45, 609
TaqII GACCGA 1 cut(s) 1913
TatI WGTACW 3 cut(s) 1816, 2181, 2442
TauI GCSGC 2 cut(s) 8, 2893
TscAI CASTG 8 cut(s) 948, 1066, 1632, 2191, 2501, 2591, 2886, 2913
TseFI GTSAC 6 cut(s) 800, 1577, 1766, 2369, 2881, 3004
Tsp45I GTSAC 6 cut(s) 800, 1577, 1766, 2369, 2881, 3004
TspGWI ACGGA 3 cut(s) 791, 2900, 3181
TspRI CASTG 8 cut(s) 948, 1066, 1632, 2191, 2501, 2591, 2886, 2913
Vha464I CTTAAG 1 cut(s) 2624
VneI GTGCAC 2 cut(s) 164, 2497
VpaK11BI GGWCC 2 cut(s) 217, 2876
VspI ATTAAT 1 cut(s) 1394
XagI CCTNNNNNAGG 1 cut(s) 2303
XapI RAATTY 5 cut(s) 1093, 1588, 1724, 1805, 2383
XceI RCATGY 3 cut(s) 665, 2164, 2837
XcmI CCANNNNNNNNNTGG 2 cut(s) 2001, 3017
XmiI GTMKAC 1 cut(s) 2172
XmnI GAANNNNTTC 4 cut(s) 720, 1299, 2064, 3044
XspI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
Zsp2I ATGCAT 2 cut(s) 253, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.