Rh1DG459900

Chromosome region maintenance protein 1 exportin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0009963
Physical Location & Seq
Reverse (-)
66388164 .. 66397128
8965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG459900.1

Sequence Viewer

Length: 3231 bp
ATGGCGGCCGAGAAGCTTAGGGATTTGAGCCAGCCCATTGACGTTGGCCTACTCGATGCCACCGTCTCGGCGTTCTACGGCACCGGATCTAAGGAGGAGAGGGCAGCTGCAGACCTGATATTGCGGGACTTGCAAAACAATCCAGATATGTGGCTCCAAGTGGTGCACATTTTGCAGAGCACCAATAACCTCAACACCAAGTTCTTTGCTTTGCAGGTCCTAGAAGGGGTTATCAAGTATAGGTGGAATGCATTGCCCGTTGAACAGAGAGATGGAATGAAAAATTATATCTCTGATGTCATTGTGCAGCTTTCAAGTAATGAGGCCTCTTTTAGAAGCGAAAGGCTGTATGTCAACAAACTCAATATCATATTGGTTCAGATTTTGAAGCATGATTGGCCTGTTAAATGGCGAAGCTTTGTTCCAGATCTCGTTTCAGCAGCTAAAACTAGTGAAACAATCTGCGAGAATTGTATGGCTATATTGAAACTTTTAAGTGAAGAGGTCTTTGATTTCTCAAGGGGAGAAATGACTCAGCAGAAGATTAAAGAGCTTAAACAGTCATTGAACAGCGAGTTTCAACTTATTCATGAGTTATGCTTGTACGTACTGTCTGTATCTCAAAGAACTGAGCTTATGCGTGCAACACTATCGACATTACATGCTTTCCTCTCATGGATTCCCTTGGGTTATATTTTTGAGTCCCCTTTGCTTGAAACCCTTCTAAAGTTTTTCCCCATGCCTCAATATCGGAATCTCGCCCTTCAGTGTTTAACAGAGGTTGCAGCACTTACATTCGGTGACTTCTACAATGCTCAGTATGTTAAGATGTATACTATATTCATGGTGCAGTTACAGACTATTCTCCCAACTACCACAAACATCCCTGAGGCTTATGCAAATGGATCTGGCGAGGAACAGGCATTTATTCAGAACTTGGCACTGTTCTTCACTTCGTTTTACAAGTCTCATATTCGTGTTCTCGAAACCAACCCAGAAAATGTAAATGCGTTGCTAATGGGTCTCGAATATCTTATAAGCATCTCATATGTGGATGACACGGAAGTTTTTAAGGTTTGCTTAGACTATTGGAACTCCTTAGTTTTGGAACTATATGAGGCGCATAATAATTTGGATAACCCTGCAGCAACAGCAAACATGATGGGACTGCAGATGCCTATGATTCCTGGTATGGTTGATGGCCTTGGCTCACAAATTATGCAGAGGAGGCAGATATATGTTAGCATCATGTCAAAGTTGAGGCTGCTCATGATCTGTCGTATGGCTAAGCCAGAAGAGGTCCTCATTGTTGAAGATGAGAATGGCAACATCGTTCGTGAGACCCTTAAGGACAATGATGTTCTTGTCCAATATAAGATCATGAGGGAAACATTAATATATTTGGCACACCTTGACCATGATGACACTGAGAAGCAGATGCTAAAGAAGTTAAGCAAACAACTGAGTGGCGAGGACTGGGCATGGAACAACTTAAACACATTATGCTGGGCAATAGGATCTATATCTGGTTCCATGGCGGAAGAACAGGAAAACAGATTTTTGGTGATGGTGATTCGTGACTTACTGAATTTATGCGAAATCATAAAAGGGAAAGATAACAAAGCTGTGATTGCAAGCAACATTATGTATGTTGTTGGACAGTACCCAAGGTTTTTAAGAGCTCATTGGAAGTTCCTAAAGACTGTTGTGAATAAGTTGTTTGAATTTATGCACGAAACACATCCTGGAGTTCAGGACATGGCTTGTGACACATTCCTCAAAATTGTTCAGAAGTGCAAGCGTAAATTTGTTATTGTACAGGTTGGGGAAAGCGAACCATTTGTGTCTGAACTCTTGACAGGCCTCCCTACAACTGTTGGTGATCTTGAGCCTCACCAGATTCATACTTTTTATGAAGCGGTTGGTCATATGATTCAAGCAGAATCTGATCCCCAAAAGAGGGATGAATATTTACACAGATTGATGAGTCTCCCAAATCAGAAATGGTCCGAGATCATTGGGCAAGCACGCCAAAGTGTCGAAGTTCTTAAGGATCAGGAAGTGATTCGAACCGTTCTTAATATATTACAGACAAATACAAGCGTTGCCAGCTCTCTTGGAACATTTTTCCTAACCCAGATATCATTGATCTTTTTGGACATGCTTAATGTCTACAGGATGTATAGTGAGCTTGTATCTAGTACCATTGCTGAAGGGGGGCCTTTTGCTTCTAAAACATCCTATGTGAAACTTCTTAGGTCGGTCAAGAGGGAGACTCTCAAACTGATTGAGACATTCCTGGACAAGGCTGAAGACCAATCACATATAGGAAAACAGATTGTGCCTCCGATGCTGGATCCTGTCCTTGGTGACTATGCCAGGAATTTGCCTGATGCTAGAGAGTCGGAAGTTTTATCACTTTTTGCCACAATTATAAACAAGTACAAAACTGAGATGATAGAGGATGTGCCTCGCATATTTGAAGCAGTTTTTCAGTGCACATTGGTGATGATTACAAAAAACTTTGAAGATTATCCAGAGCATCGCCTGAAGTTCTTTTCATTACTTCGTGCCATCGCTGCATACTGTTTTCCTGCGTTGATTAGATTATCGAGTCAGCAACTAAAGCTTGTCATGGATTCAATTATTTGGGCATTTCGGCACACAGAAAGAAATATTGCTGAAACTGGGCTGAACCTGTTATTGGAGATGCTGAAGAACTTTCAGAAATCGGAGTTCTGTAATCAATTTTTCCGGACATACTATTTGCAAATTGAGCAAGAAATCTTTGCTGTCTTGACGGACACGTTTCATAAGCCTGGGTTCAAGTTGCATGTCTTGGTGCTCCAACAGTTGTTTTGCCTTGTAGAAAGTGGTCCAGTGACGGAGCCTCTGTGGGATGTTGCAGTGGTTCCTTATCAATATCCAAATAATGCAATGTTTGTTCGGGAATTCACCATCAAGCTTTTGAGTGATTCCTTCCCCAACATGACTTCCATAGAGGTCACTCAATTTGTGAATGGACTATTCGAGTCCAAGAATGACTTGGCCACATTTAAGGATCACATCCGAGACTTTCTAGTGCAATCAAAAGAATTTTCAGCACAGGACAACAAAGATCTTTATGCAGAGGAGGCTGCTGTACAAAGAGAAAGAGAACGGCAACGGATGCTTTCTATTCCTGGGCTCGTTGCCCCCAATGAGATACAAGATGAAATGGTTGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

1076

Amino Acids

123.77

Weight (kDa)

5.34

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 39 - 103 1.7e-15 Importin-beta N-terminal domain
Xpo1 PF08389 115 - 258 9.8e-43 Exportin 1-like protein
CRM1_repeat PF18777 337 - 372 9.9e-18 Chromosome region maintenance or exportin repeat
CRM1_repeat_2 PF18784 409 - 476 1.3e-30 CRM1 / Exportin repeat 2
CRM1_repeat_3 PF18787 490 - 539 3.2e-26 CRM1 / Exportin repeat 3
CRM1_C PF08767 713 - 1034 8.1e-131 CRM1 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03110 AT5G17020 AT5G17020
fragaria_vesca FvH4_7g33850 FvH4_7g33850
malus_domestica MD01G1234500.v1.1 MD07G1307000.v1.1
prunus_persica Prupe.2G324800_v2.0.a1 Prupe.2G324800_v2.0.a1
pyrus_communis pycom01g24280 pycom07g28000
rosa_chinensis RchiOBHm_Chr1g0383961
rosa_laevigata RLG00000026083
rosa_multiflora Rmu_sc0005139.1_g000024
rosa_roxburghii Rroxscaffold_4G00277100
rosa_rugosa Rorug01G0443900
rosa_samantha Rh1AG469400 Rh1BG427100 Rh1CG439900 Rh1DG459900
rosa_wichuraiana Rw1G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1037, 2435
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 80
AccI GTMKAC 2 cut(s) 833, 2172
AccIII TCCGGA 1 cut(s) 2754
AciI CCGC 4 cut(s) 5, 124, 1538, 1919
AclWI GGATC 8 cut(s) 94, 913, 1525, 1943, 2061, 2351, 2364, 3069
AcoI YGGCCR 2 cut(s) 6, 3048
AcsI RAATTY 6 cut(s) 1588, 1724, 1805, 2383, 2951, 3095
AcuI CTGAAG 5 cut(s) 749, 2232, 2331, 2570, 2735
AfaI GTAC 7 cut(s) 605, 609, 1664, 1818, 2203, 2444, 3144
AfiI CCNNNNNNNGG 6 cut(s) 226, 1959, 1960, 2305, 2366, 2704
AflII CTTAAG 2 cut(s) 1346, 2048
AflIII ACRYGT 1 cut(s) 2805
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
AjuI GAANNNNNNNTTGG 2 cut(s) 2687, 2719
AleI CACNNNNGTG 1 cut(s) 2504
Alw21I GWGCWC 5 cut(s) 168, 182, 1684, 2501, 2847
Alw26I GTCTC 8 cut(s) 70, 972, 1028, 1334, 1994, 2267, 2285, 3066
Alw44I GTGCAC 2 cut(s) 164, 2497
AlwI GGATC 8 cut(s) 94, 913, 1525, 1943, 2061, 2351, 2364, 3069
AlwNI CAGNNNCTG 1 cut(s) 1946
Aor13HI TCCGGA 1 cut(s) 2754
AoxI GGCC 8 cut(s) 6, 46, 324, 398, 1201, 1861, 2219, 3048
ApaLI GTGCAC 2 cut(s) 164, 2497
ApeKI GCWGC 9 cut(s) 104, 107, 307, 440, 785, 1145, 1264, 2579, 3137
ApoI RAATTY 6 cut(s) 1588, 1724, 1805, 2383, 2951, 3095
ArsI GACNNNNNNTTYG 2 cut(s) 2749, 2781
AseI ATTAAT 1 cut(s) 1394
Asp700I GAANNNNTTC 2 cut(s) 720, 2064
AspLEI GCGC 1 cut(s) 1123
AspS9I GGNCC 5 cut(s) 217, 1300, 2007, 2219, 2876
AsuHPI GGTGA 8 cut(s) 812, 1576, 1582, 1886, 1892, 2381, 2518, 2947
AsuII TTCGAA 1 cut(s) 2068
AvaII GGWCC 4 cut(s) 217, 1300, 2007, 2876
AxyI CCTNAGG 1 cut(s) 888
BaeGI GKGCMC 2 cut(s) 168, 2501
BalI TGGCCA 1 cut(s) 3050
BamHI GGATCC 1 cut(s) 2356
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 1684, 3189
BbsI GAAGAC 1 cut(s) 2319
Bbv12I GWGCWC 5 cut(s) 168, 182, 1684, 2501, 2847
BbvI GCAGC 9 cut(s) 94, 116, 319, 452, 797, 1157, 1251, 2566, 3124
BccI CCATC 6 cut(s) 266, 1156, 1193, 1561, 2582, 2966
BceAI ACGGC 2 cut(s) 94, 3176
BcgI CGANNNNNNTGC 2 cut(s) 633, 667
BciT130I CCWGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
BcoDI GTCTC 8 cut(s) 70, 972, 1028, 1334, 1994, 2267, 2285, 3066
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
BfmI CTRYAG 4 cut(s) 108, 1143, 1169, 2173
BfrI CTTAAG 2 cut(s) 1346, 2048
BfuAI ACCTGC 1 cut(s) 205
BglII AGATCT 2 cut(s) 427, 3118
BlpI GCTNAGC 1 cut(s) 1287
Bme1390I CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
Bme18I GGWCC 4 cut(s) 217, 1300, 2007, 2876
BmgT120I GGNCC 5 cut(s) 217, 1300, 2007, 2219, 2876
BmiI GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2358, 2889, 2913
BmrFI CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
BmrI ACTGGG 2 cut(s) 1486, 2697
BmuI ACTGGG 2 cut(s) 1486, 2697
BpiI GAAGAC 1 cut(s) 2319
BplI GAGNNNNNCTC 2 cut(s) 2260, 2292
BpmI CTGGAG 1 cut(s) 1767
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 1287
Bpu14I TTCGAA 1 cut(s) 2068
BpuEI CTTGAG 2 cut(s) 502, 1907
BsaAI YACGTR 1 cut(s) 607
BsaBI GATNNNNATC 1 cut(s) 1522
BsaI GGTCTC 2 cut(s) 1028, 1334
BsaJI CCNNGG 7 cut(s) 684, 1204, 1533, 1667, 2365, 2819, 3182
BsaWI WCCGGW 2 cut(s) 83, 2754
BsaXI ACNNNNNCTCC 2 cut(s) 2879, 2909
Bsc4I CCNNNNNNNGG 6 cut(s) 226, 1959, 1960, 2305, 2366, 2704
Bse1I ACTGG 3 cut(s) 1481, 2692, 2879
Bse21I CCTNAGG 1 cut(s) 888
Bse3DI GCAATG 3 cut(s) 251, 2205, 2943
Bse8I GATNNNNATC 1 cut(s) 1522
BseAI TCCGGA 1 cut(s) 2754
BseBI CCWGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
BseDI CCNNGG 7 cut(s) 684, 1204, 1533, 1667, 2365, 2819, 3182
BseJI GATNNNNATC 1 cut(s) 1522
BseLI CCNNNNNNNGG 6 cut(s) 226, 1959, 1960, 2305, 2366, 2704
BseMI GCAATG 3 cut(s) 251, 2205, 2943
BseMII CTCAG 7 cut(s) 548, 621, 830, 879, 1419, 1454, 2442
BseNI ACTGG 3 cut(s) 1481, 2692, 2879
BseRI GAGGAG 3 cut(s) 110, 1240, 3146
BseSI GKGCMC 2 cut(s) 168, 2501
BseX3I CGGCCG 1 cut(s) 6
BseXI GCAGC 9 cut(s) 94, 116, 319, 452, 797, 1157, 1251, 2566, 3124
BseYI CCCAGC 1 cut(s) 1506
BsgI GTGCAG 2 cut(s) 326, 869
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 8 cut(s) 8, 48, 326, 400, 1203, 1863, 2221, 3050
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 5 cut(s) 168, 182, 1684, 2501, 2847
BsiSI CCGG 2 cut(s) 84, 2755
BslFI GGGAC 3 cut(s) 140, 688, 1179
BslI CCNNNNNNNGG 6 cut(s) 226, 1959, 1960, 2305, 2366, 2704
BsmAI GTCTC 8 cut(s) 70, 972, 1028, 1334, 1994, 2267, 2285, 3066
BsmBI CGTCTC 1 cut(s) 70
BsmFI GGGAC 3 cut(s) 140, 688, 1179
BsmI GAATGC 1 cut(s) 253
BsnI GGCC 8 cut(s) 8, 48, 326, 400, 1203, 1863, 2221, 3050
Bso31I GGTCTC 2 cut(s) 1028, 1334
Bsp119I TTCGAA 1 cut(s) 2068
Bsp1286I GDGCHC 6 cut(s) 168, 182, 1684, 2501, 2847, 3189
Bsp13I TCCGGA 1 cut(s) 2754
Bsp1407I TGTACA 2 cut(s) 1816, 3142
Bsp1720I GCTNAGC 1 cut(s) 1287
Bsp19I CCATGG 1 cut(s) 1533
BspACI CCGC 4 cut(s) 5, 124, 1538, 1919
BspANI GGCC 8 cut(s) 8, 48, 326, 400, 1203, 1863, 2221, 3050
BspCNI CTCAG 7 cut(s) 547, 622, 829, 880, 1420, 1455, 2443
BspEI TCCGGA 1 cut(s) 2754
BspHI TCATGA 3 cut(s) 589, 1269, 1380
BspLI GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2358, 2889, 2913
BspMAI CTGCAG 3 cut(s) 112, 1147, 1173
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 8 cut(s) 94, 913, 1525, 1943, 2061, 2351, 2364, 3069
BspT104I TTCGAA 1 cut(s) 2068
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 2 cut(s) 1346, 2048
BspTNI GGTCTC 2 cut(s) 1028, 1334
BsrDI GCAATG 3 cut(s) 251, 2205, 2943
BsrGI TGTACA 2 cut(s) 1816, 3142
BsrI ACTGG 3 cut(s) 1481, 2692, 2879
BssECI CCNNGG 7 cut(s) 684, 1204, 1533, 1667, 2365, 2819, 3182
BssNAI GTATAC 1 cut(s) 834
BssT1I CCWWGG 5 cut(s) 684, 1204, 1533, 1667, 2365
Bst1107I GTATAC 1 cut(s) 834
Bst2UI CCWGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
Bst6I CTCTTC 2 cut(s) 495, 1290
BstAFI CTTAAG 2 cut(s) 1346, 2048
BstAPI GCANNNNNTGC 2 cut(s) 172, 3169
BstAUI TGTACA 2 cut(s) 1816, 3142
BstBAI YACGTR 1 cut(s) 607
BstBI TTCGAA 1 cut(s) 2068
BstC8I GCNNGC 7 cut(s) 32, 642, 1636, 1799, 2025, 2029, 2110
BstDSI CCRYGG 1 cut(s) 1533
BstENI CCTNNNNNAGG 1 cut(s) 2303
BstHHI GCGC 1 cut(s) 1123
BstMAI GTCTC 8 cut(s) 70, 972, 1028, 1334, 1994, 2267, 2285, 3066
BstMCI CGRYCG 1 cut(s) 9
BstNI CCWGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
BstNSI RCATGY 3 cut(s) 665, 2164, 2837
BstSCI CCNGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
BstSFI CTRYAG 4 cut(s) 108, 1143, 1169, 2173
BstSLI GKGCMC 2 cut(s) 168, 2501
BstSNI TACGTA 1 cut(s) 607
BstV1I GCAGC 9 cut(s) 94, 116, 319, 452, 797, 1157, 1251, 2566, 3124
BstV2I GAAGAC 1 cut(s) 2319
BstX2I RGATCY 6 cut(s) 86, 427, 905, 1517, 2356, 3118
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 6 cut(s) 86, 427, 905, 1517, 2356, 3118
BstZ17I GTATAC 1 cut(s) 834
BstZI CGGCCG 1 cut(s) 6
Bsu36I CCTNAGG 1 cut(s) 888
BsuRI GGCC 8 cut(s) 8, 48, 326, 400, 1203, 1863, 2221, 3050
BtgI CCRYGG 1 cut(s) 1533
BtgZI GCGATG 2 cut(s) 2528, 2560
BtsI GCAGTG 1 cut(s) 2913
BtsIMutI CAGTG 6 cut(s) 773, 941, 1425, 2501, 2886, 2913
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 7 cut(s) 32, 642, 1636, 1799, 2025, 2029, 2110
CaiI CAGNNNCTG 1 cut(s) 1946
CciI TCATGA 3 cut(s) 589, 1269, 1380
CfoI GCGC 1 cut(s) 1123
Cfr13I GGNCC 5 cut(s) 217, 1300, 2007, 2219, 2876
Csp6I GTAC 7 cut(s) 604, 608, 1663, 1817, 2202, 2443, 3143
CviQI GTAC 7 cut(s) 604, 608, 1663, 1817, 2202, 2443, 3143
EaeI YGGCCR 2 cut(s) 6, 3048
EagI CGGCCG 1 cut(s) 6
Eam1104I CTCTTC 2 cut(s) 495, 1290
EarI CTCTTC 2 cut(s) 495, 1290
EciI GGCGGA 1 cut(s) 1553
Ecl136II GAGCTC 1 cut(s) 1682
EclXI CGGCCG 1 cut(s) 6
Eco105I TACGTA 1 cut(s) 607
Eco130I CCWWGG 5 cut(s) 684, 1204, 1533, 1667, 2365
Eco147I AGGCCT 2 cut(s) 326, 1863
Eco24I GRGCYC 2 cut(s) 1684, 3189
Eco31I GGTCTC 2 cut(s) 1028, 1334
Eco32I GATATC 1 cut(s) 2142
Eco47I GGWCC 4 cut(s) 217, 1300, 2007, 2876
Eco52I CGGCCG 1 cut(s) 6
Eco53kI GAGCTC 1 cut(s) 1682
Eco57I CTGAAG 5 cut(s) 749, 2232, 2331, 2570, 2735
Eco81I CCTNAGG 1 cut(s) 888
EcoICRI GAGCTC 1 cut(s) 1682
EcoNI CCTNNNNNAGG 1 cut(s) 2303
EcoO109I RGGNCCY 3 cut(s) 217, 1300, 2219
EcoRI GAATTC 1 cut(s) 2951
EcoRII CCWGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
EcoRV GATATC 1 cut(s) 2142
EcoT14I CCWWGG 5 cut(s) 684, 1204, 1533, 1667, 2365
EcoT22I ATGCAT 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 1684, 3189
ErhI CCWWGG 5 cut(s) 684, 1204, 1533, 1667, 2365
Esp3I CGTCTC 1 cut(s) 70
FalI AAGNNNNNCTT 4 cut(s) 1064, 1096, 3029, 3061
FaqI GGGAC 3 cut(s) 140, 688, 1179
FauI CCCGC 1 cut(s) 117
FauNDI CATATG 2 cut(s) 1048, 1929
FblI GTMKAC 2 cut(s) 833, 2172
FriOI GRGCYC 2 cut(s) 1684, 3189
FspBI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
GlaI GCGC 1 cut(s) 1122
GsaI CCCAGC 1 cut(s) 1510
GsuI CTGGAG 1 cut(s) 1767
HaeIII GGCC 8 cut(s) 8, 48, 326, 400, 1203, 1863, 2221, 3050
HapII CCGG 2 cut(s) 84, 2755
HhaI GCGC 1 cut(s) 1123
Hin6I GCGC 1 cut(s) 1121
HinP1I GCGC 1 cut(s) 1121
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 4 cut(s) 14, 415, 2627, 2963
HpaII CCGG 2 cut(s) 84, 2755
HphI GGTGA 8 cut(s) 812, 1576, 1582, 1886, 1892, 2381, 2518, 2947
Hpy166II GTNNAC 5 cut(s) 166, 355, 834, 2173, 2499
Hpy8I GTNNAC 5 cut(s) 166, 355, 834, 2173, 2499
HpyAV CCTTC 5 cut(s) 218, 731, 773, 2207, 2989
HpyCH4IV ACGT 3 cut(s) 42, 606, 2807
HpySE526I ACGT 3 cut(s) 42, 606, 2807
HspAI GCGC 1 cut(s) 1121
Kpn2I TCCGGA 1 cut(s) 2754
LmnI GCTCC 3 cut(s) 159, 2850, 2887
Lsp1109I GCAGC 9 cut(s) 94, 116, 319, 452, 797, 1157, 1251, 2566, 3124
MaeI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
MaeII ACGT 3 cut(s) 42, 606, 2807
MaeIII GTNAC 7 cut(s) 800, 852, 1577, 1766, 2369, 2881, 3004
MboII GAAGA 9 cut(s) 512, 553, 940, 1307, 1325, 1553, 2324, 2540, 2728
MflI RGATCY 6 cut(s) 86, 427, 905, 1517, 2356, 3118
MhlI GDGCHC 6 cut(s) 168, 182, 1684, 2501, 2847, 3189
MlsI TGGCCA 1 cut(s) 3050
MluNI TGGCCA 1 cut(s) 3050
MlyI GAGTC 7 cut(s) 526, 710, 1996, 2269, 2411, 2623, 3041
MmeI TCCRAC 3 cut(s) 1636, 2385, 2872
Mox20I TGGCCA 1 cut(s) 3050
Mph1103I ATGCAT 1 cut(s) 253
MroI TCCGGA 1 cut(s) 2754
MroXI GAANNNNTTC 2 cut(s) 720, 2064
MscI TGGCCA 1 cut(s) 3050
MslI CAYNNNNRTG 2 cut(s) 975, 2504
Msp20I TGGCCA 1 cut(s) 3050
MspA1I CMGCKG 1 cut(s) 107
MspCI CTTAAG 2 cut(s) 1346, 2048
MspI CCGG 2 cut(s) 84, 2755
MspR9I CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
NcoI CCATGG 1 cut(s) 1533
NdeI CATATG 2 cut(s) 1048, 1929
NlaIV GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2358, 2889, 2913
NmeAIII GCCGAG 2 cut(s) 34, 47
NmuCI GTSAC 6 cut(s) 800, 1577, 1766, 2369, 2881, 3004
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 3 cut(s) 665, 2164, 2837
NspV TTCGAA 1 cut(s) 2068
OliI CACNNNNGTG 1 cut(s) 2504
PagI TCATGA 3 cut(s) 589, 1269, 1380
PceI AGGCCT 2 cut(s) 326, 1863
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PctI GAATGC 1 cut(s) 253
PdmI GAANNNNTTC 2 cut(s) 720, 2064
PfoI TCCNGGA 2 cut(s) 1744, 2298
PleI GAGTC 7 cut(s) 526, 709, 1995, 2269, 2410, 2622, 3040
PpsI GAGTC 7 cut(s) 526, 709, 1995, 2269, 2410, 2622, 3040
Ppu21I YACGTR 1 cut(s) 607
PpuMI RGGWCCY 2 cut(s) 217, 1300
PshBI ATTAAT 1 cut(s) 1394
PsiI TTATAA 2 cut(s) 1037, 2435
Psp124BI GAGCTC 1 cut(s) 1684
Psp5II RGGWCCY 2 cut(s) 217, 1300
Psp6I CCWGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
PspFI CCCAGC 1 cut(s) 1506
PspGI CCWGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
PspN4I GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2358, 2889, 2913
PspPI GGNCC 5 cut(s) 217, 1300, 2007, 2219, 2876
PspPPI RGGWCCY 2 cut(s) 217, 1300
PstI CTGCAG 3 cut(s) 112, 1147, 1173
PstNI CAGNNNCTG 1 cut(s) 1946
PsuI RGATCY 6 cut(s) 86, 427, 905, 1517, 2356, 3118
PvuII CAGCTG 1 cut(s) 107
RsaI GTAC 7 cut(s) 605, 609, 1664, 1818, 2203, 2444, 3144
RsaNI GTAC 7 cut(s) 604, 608, 1663, 1817, 2202, 2443, 3143
RseI CAYNNNNRTG 2 cut(s) 975, 2504
SacI GAGCTC 1 cut(s) 1684
Sau96I GGNCC 5 cut(s) 217, 1300, 2007, 2219, 2876
SchI GAGTC 7 cut(s) 526, 710, 1996, 2269, 2411, 2623, 3041
ScrFI CCNGG 6 cut(s) 1188, 1746, 2300, 2380, 2820, 3183
SduI GDGCHC 6 cut(s) 168, 182, 1684, 2501, 2847, 3189
SfcI CTRYAG 4 cut(s) 108, 1143, 1169, 2173
SfuI TTCGAA 1 cut(s) 2068
SinI GGWCC 4 cut(s) 217, 1300, 2007, 2876
SmiMI CAYNNNNRTG 2 cut(s) 975, 2504
SmlI CTYRAG 4 cut(s) 517, 1346, 1886, 2048
SmoI CTYRAG 4 cut(s) 517, 1346, 1886, 2048
SnaBI TACGTA 1 cut(s) 607
SpeI ACTAGT 1 cut(s) 449
SseBI AGGCCT 2 cut(s) 326, 1863
SsiI CCGC 4 cut(s) 5, 124, 1538, 1919
SspI AATATT 2 cut(s) 1970, 2677
SspMI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
SstI GAGCTC 1 cut(s) 1684
StuI AGGCCT 2 cut(s) 326, 1863
StyD4I CCNGG 6 cut(s) 1186, 1744, 2298, 2378, 2818, 3181
StyI CCWWGG 5 cut(s) 684, 1204, 1533, 1667, 2365
TaiI ACGT 3 cut(s) 45, 609, 2810
TaqI TCGA 8 cut(s) 54, 653, 984, 1026, 2040, 2068, 2612, 3030
TaqII GACCGA 1 cut(s) 2251
TatI WGTACW 3 cut(s) 1816, 2442, 3142
TauI GCSGC 1 cut(s) 8
TscAI CASTG 6 cut(s) 773, 948, 1432, 2501, 2886, 2913
TseFI GTSAC 6 cut(s) 800, 1577, 1766, 2369, 2881, 3004
TseI GCWGC 9 cut(s) 104, 107, 307, 440, 785, 1145, 1264, 2579, 3137
Tsp45I GTSAC 6 cut(s) 800, 1577, 1766, 2369, 2881, 3004
TspDTI ATGAA 9 cut(s) 293, 578, 832, 1892, 1929, 1980, 2550, 2801, 3228
TspGWI ACGGA 4 cut(s) 1076, 2816, 2900, 3181
TspRI CASTG 6 cut(s) 773, 948, 1432, 2501, 2886, 2913
Vha464I CTTAAG 2 cut(s) 1346, 2048
VneI GTGCAC 2 cut(s) 164, 2497
VpaK11BI GGWCC 4 cut(s) 217, 1300, 2007, 2876
VspI ATTAAT 1 cut(s) 1394
XagI CCTNNNNNAGG 1 cut(s) 2303
XapI RAATTY 6 cut(s) 1588, 1724, 1805, 2383, 2951, 3095
XceI RCATGY 3 cut(s) 665, 2164, 2837
XcmI CCANNNNNNNNNTGG 2 cut(s) 2001, 3043
XmiI GTMKAC 2 cut(s) 833, 2172
XmnI GAANNNNTTC 2 cut(s) 720, 2064
XspI CTAG 6 cut(s) 221, 450, 2199, 2397, 3080, 3229
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.