MD07G1307000.v1.1

Chromosome region maintenance protein 1 exportin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0009963
Physical Location & Seq
Reverse (-)
36329384 .. 36340633
11250 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1307000.v1.1.491

Sequence Viewer

Length: 3234 bp
ATGGCGGCTGAGAAGCTAAGGGACTTGAGCCAGCCGATTGACGTTGGCTTGCTCGATGCCACCGTCGTCGCCTTCTACGGCACCGGATCTAAGGAGGAGAGGACAGCTGCAGACCAGATATTGAGGGACTTGCAAAACAATCCCGATATGTGGCTCCAAGTTGTGCACATTTTACAGAGCGCAAAGAACCTAAACACCAAGTTCTTTGCCCTGCAGGTCCTAGAAGGGGTTATCAAGTATAGGTGGAATGCATTGCCTGTTGAACAGCGAGACGGAATGAAAAATTATATTTCTGATGTCATTGTACAGCTATCAAGTAATGAGGCCTCTTTTCGAATGGAAAGACTTTATGTCAGCAAACTCAATATTATACTCGTTCAGATTTTGAAGCATGATTGGCCCACTAAATGGCGAAGCTTTATTCCAGATCTTGTATCAGCAGCTAAAACTAGTGAAACCATTTGCGAGAATTGTATGGCCATATTGAAGCTCCTAAGTGAAGAGGTTTTTGATTTCTCAAGGGGGGAAATGACACAGTTAAAGATTAAAGAGCTTAAACAATCATTGAACAGTGAGTTTCAACTCATTCATGAGTTGTGCTTATATGTACTATCAGCCTCTCAACGAACCGAGCTGATACGTGCAACATTATCCACACTGCATGCTTTCCTTTCATGGATTCCCCTGGGATATATTTTCGAGTCCCCTTTGCTTGAAACCCTTCTGAAGTTTTTTCCCATGCCTTTATATCGGAATCTTGCCCTTCAATGTCTAACGGAGGTTGCAGCACTTAGTTTCGGTGAATTCTATAATGCACAATATGTTAAGATGTACAATATATTCATGGTGCAGTTACAGACTATTCTCCCATCCACCACAAACATCCCTGAAGCTTATGCAAATGGATCTGGCGAGGAACAGGCATTCATTCAGAACTTGGCACTGTTTCTCACTTCGTTTTACAAGTCGCATATTCGTGTTCTTGAAACCACACCAGAGACTATAGCTGCATTGCTGATGGGTCTTGAATATCTTGTAAACATCTCCTATGTGGATGACACCGAAGTTTTTAAGGTTTGCTTAGACTATTGGAATGCCTTGGTTTTGGAACTGTTTGAGGCAAATCATAATCTGGATAACCCTGCAGTATCTGCCAATATGATGGGGTTGCAGATGAATTTGCTTCCTAGTATGGTTGATGGCCTTGGCTCACAACTTTTGCAAAGGCGGCAAATATATGTTGGTATTATGTCAAAGTTGAGGTTGCTCATGATCTGTCGTATGGCTAAGCCAGAAGAGGTTCTCATTGTTGAAGATGAGAACGGGAACATTGTTCGTGAGACCTTGAAGGACAATGATGTTCTAGTTCAATATAAGATCATGAGGGAGACACTGATATATTTGTCACACCTTGACCACGACGACACCGAGAAGCAGATGCTAAAGAAATTAAACAAACAACTGACTGGTGAGGATTGGGCATGGAACAACTTAAACACATTATGCTGGGCAATAGGGTCTATATCTGGTTCCATGATGGAAGAACAGGAAAATAGATTTTTGGTGATGGTCATTCGCGACCTGCTGAACTTGTGTGAAATCATAAAGGGGAAAGATAATAAAGCAGTTATTGCAAGCAACATCATGTATGTTGTCGGACAGTACCCAAGGTTCTTAAGAGCTCATTGGAAGTTCTTAAAGACTGTTGTGAATAAGTTGTTTGAGTTTATGCATGAAACGCATCCTGGAGTTCAGGACATGGCCTGCGACACATTCTTGAAAATTGTTCAAAAGTGCAAGCGTAAATTTGTTATTGTACAGGTTGGAGAAAATGAACCATTTGTTTCTGAACTCCTGACAAGCCTGCCGAGTACTGTTGGCGATCTTCAACCTCACCAGATTCATACTTTCTATGAAGCTGTTGGTCATATGATTCAAGCAGAGTCTGATCCCAAGAAGAGAGAAGAATATCTACAGAGATTGATGGGTCTCCCAAATCAGCAGAAATGGGCCGAGATTATAGGGCAAGCACGCCTAAGTGTTGATTTCCTGAAGGATCAGGAGGTAATTCGGACTGTGCTTAATATATTACAGACAAATACTAGCGTTGCGAGCTCCCTTGGAACGTTTTTCCTGTCTCAGATCTCAATGATATTTCTGGACATGCTTAATGTGTACAGGATGTACAGTGAGCTTGTATCTAGTAACATTGCAGAAGGGGGTCCCTATGCTTCCAAAACATCCTATGTGAAACTTCTTCGGTCGGTGAAGAGGGAGACTCTCAAGTTGATTGAGACATTCTTGGACAAGGCAGAAGACCAACCACACATAGGAAAACAAATTGTGCCTCCCATGTTGGATCCGGTCCTAGGTGACTATGCCAGGAATTTGCCTGATGCTAGAGAGTCGGAGGTTTTGTCACTTTTTGCCACTATCATAAATAAGTACAAGGGTGCAATGATAGATGATGTGCCAAGAATATTTGAAGCTGTTTTCCAGTGCACATTGGAGATGATCACCAAAAATTTTGAAGATTACCCAGAGCATCGATTGAAGTTCTTTTCTTTGCTTCGTGCCATTGCTGCACACTGCTTTGCTGCATTGATTCGATTATCGAGTCCGCAACTGAAGCTTGTCATGGATTCAATTATATGGGCGTTTCGGCACACTGAAAGAAATATTGCTGAAACTGGGCTGAACCTGTTGTTGGAAATGCTGAGAAACTTTCAGAATTCAGAGTTCTGCAATCAGTTTTACCGTACATACTTTCTGACAATTGAGCAAGAAATATTTGCTGTCTTGACTGATACATTTCATAAGCCTGGGTTCAAGTTGCATGTCTTGGTTCTCCAACATTTGTTTAGCCTGGTGGGAAGTAATCTGTTGAAGGAGCCTTTATGGGATGTTGCAGCTGTTCCTTATCAATATCCTAATAATGGAATGTTTGTTCGTGAATATACAATAAAGCTTTTGAGTACTTCATTCCCGAATATGACTGGGGCGGAGGTTGCTCAATTTGTGAATGGACTATTTGAATCAACGGCTGACATACCCACTTTTAAAAATCACATCCGAGACTTCCTAGTGCAATCCAAAGAATTTTCAGCACAGGACAACAAAGATCTTTATGCAGAGGAGGCTGCTGCTCAGAGAGAGAGAGACCGGCAACGAATGCTTTCTATTCCTGGGCTTATTGCCCCCAATGAGATACAGGACGAAATGGTTGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

1078

Amino Acids

123.6

Weight (kDa)

5.53

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 37 - 103 8.4e-16 Importin-beta N-terminal domain
Xpo1 PF08389 115 - 258 3.8e-42 Exportin 1-like protein
CRM1_repeat PF18777 337 - 372 9.4e-18 Chromosome region maintenance or exportin repeat
CRM1_repeat_2 PF18784 409 - 476 1.3e-30 CRM1 / Exportin repeat 2
CRM1_repeat_3 PF18787 490 - 539 5.1e-26 CRM1 / Exportin repeat 3
CRM1_C PF08767 714 - 1035 2.5e-131 CRM1 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03110 AT5G17020 AT5G17020
fragaria_vesca FvH4_7g33850 FvH4_7g33850
malus_domestica MD01G1234500.v1.1 MD07G1307000.v1.1
prunus_persica Prupe.2G324800_v2.0.a1 Prupe.2G324800_v2.0.a1
pyrus_communis pycom01g24280 pycom07g28000
rosa_chinensis RchiOBHm_Chr1g0383961
rosa_laevigata RLG00000026083
rosa_multiflora Rmu_sc0005139.1_g000024
rosa_roxburghii Rroxscaffold_4G00277100
rosa_rugosa Rorug01G0443900
rosa_samantha Rh1AG469400 Rh1BG427100 Rh1CG439900 Rh1DG459900
rosa_wichuraiana Rw1G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 205, 1590
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 1 cut(s) 408
AccII CGCG 1 cut(s) 1578
AciI CCGC 4 cut(s) 5, 1228, 2621, 3002
AclI AACGTT 1 cut(s) 2126
AclWI GGATC 6 cut(s) 94, 913, 1943, 2064, 2354, 2367
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 7 cut(s) 803, 1177, 1805, 2386, 2524, 2731, 3098
AcuI CTGAAG 4 cut(s) 746, 909, 2072, 2648
AfiI CCNNNNNNNGG 7 cut(s) 150, 226, 408, 2330, 2369, 2707, 2936
AflII CTTAAG 1 cut(s) 1675
AhdI GACNNNNNGTC 1 cut(s) 350
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 6 cut(s) 684, 1744, 2381, 2821, 2865, 3184
AjuI GAANNNNNNNTTGG 2 cut(s) 2690, 2722
AloI GAACNNNNNNTCC 2 cut(s) 2931, 2963
Alw21I GWGCWC 4 cut(s) 168, 1684, 2117, 2504
Alw44I GTGCAC 2 cut(s) 164, 2500
AlwI GGATC 6 cut(s) 94, 913, 1943, 2064, 2354, 2367
AlwNI CAGNNNCTG 2 cut(s) 1151, 1946
AoxI GGCC 6 cut(s) 324, 398, 477, 1201, 1761, 2010
ApaLI GTGCAC 2 cut(s) 164, 2500
ApeKI GCWGC 9 cut(s) 107, 440, 785, 1007, 2582, 2597, 2909, 3140, 3143
ApoI RAATTY 7 cut(s) 803, 1177, 1805, 2386, 2524, 2731, 3098
Asp700I GAANNNNTTC 3 cut(s) 720, 1299, 3175
AspA2I CCTAGG 1 cut(s) 2368
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 5 cut(s) 217, 399, 2010, 2222, 2365
AsuHPI GGTGA 7 cut(s) 812, 1481, 1576, 1886, 2278, 2384, 2509
AsuII TTCGAA 1 cut(s) 334
AvaII GGWCC 3 cut(s) 217, 2222, 2365
AvrII CCTAGG 1 cut(s) 2368
BaeGI GKGCMC 2 cut(s) 168, 2504
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 1 cut(s) 2359
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 1684, 2117
BarI GAAGNNNNNNTAC 2 cut(s) 1956, 1988
BbsI GAAGAC 1 cut(s) 2322
Bbv12I GWGCWC 4 cut(s) 168, 1684, 2117, 2504
BbvI GCAGC 9 cut(s) 94, 452, 797, 994, 2569, 2584, 2921, 3127, 3130
BccI CCATC 7 cut(s) 877, 1012, 1156, 1193, 1531, 1561, 1978
BceAI ACGGC 2 cut(s) 94, 3057
BciT130I CCWGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
BclI TGATCA 1 cut(s) 2514
BcuI ACTAGT 1 cut(s) 449
BfmI CTRYAG 5 cut(s) 108, 212, 1002, 1143, 1973
BfrI CTTAAG 1 cut(s) 1675
BfuAI ACCTGC 2 cut(s) 205, 1590
BglII AGATCT 3 cut(s) 427, 2142, 3121
BlnI CCTAGG 1 cut(s) 2368
BlpI GCTNAGC 1 cut(s) 1287
BmcAI AGTACT 2 cut(s) 1873, 2977
Bme1390I CCNGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
Bme18I GGWCC 3 cut(s) 217, 2222, 2365
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgT120I GGNCC 5 cut(s) 217, 399, 2010, 2222, 2365
BmiI GGNNCC 7 cut(s) 82, 155, 1531, 2223, 2224, 2361, 2892
BmrFI CCNGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
BmrI ACTGGG 2 cut(s) 2700, 3006
BmsI GCATC 5 cut(s) 46, 1428, 1750, 2386, 2554
BmuI ACTGGG 2 cut(s) 2700, 3006
BpiI GAAGAC 1 cut(s) 2322
BplI GAGNNNNNCTC 2 cut(s) 2263, 2295
BpmI CTGGAG 1 cut(s) 1767
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 1287
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 3 cut(s) 46, 502, 2267
Bsa29I ATCGAT 1 cut(s) 2548
BsaAI YACGTR 1 cut(s) 641
BsaI GGTCTC 3 cut(s) 1334, 1994, 3153
BsaJI CCNNGG 9 cut(s) 684, 685, 1098, 1204, 1667, 2119, 2368, 2822, 3185
BsaWI WCCGGW 2 cut(s) 83, 2362
BsaXI ACNNNNNCTCC 2 cut(s) 2402, 2432
Bsc4I CCNNNNNNNGG 7 cut(s) 150, 226, 408, 2330, 2369, 2707, 2936
Bse118I RCCGGY 1 cut(s) 3162
Bse1I ACTGG 4 cut(s) 1471, 2497, 2695, 3001
Bse3DI GCAATG 5 cut(s) 251, 1010, 2208, 2463, 2577
BseBI CCWGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
BseCI ATCGAT 1 cut(s) 2548
BseDI CCNNGG 9 cut(s) 684, 685, 1098, 1204, 1667, 2119, 2368, 2822, 3185
BseGI GGATG 8 cut(s) 869, 882, 1060, 1741, 2187, 2240, 2908, 3069
BseLI CCNNNNNNNGG 7 cut(s) 150, 226, 408, 2330, 2369, 2707, 2936
BseMI GCAATG 5 cut(s) 251, 1010, 2208, 2463, 2577
BseMII CTCAG 3 cut(s) 2153, 2708, 3161
BseNI ACTGG 4 cut(s) 1471, 2497, 2695, 3001
BseRI GAGGAG 2 cut(s) 110, 3149
BseSI GKGCMC 2 cut(s) 168, 2504
BseXI GCAGC 9 cut(s) 94, 452, 797, 994, 2569, 2584, 2921, 3127, 3130
BseYI CCCAGC 1 cut(s) 1506
BsgI GTGCAG 2 cut(s) 869, 2568
Bsh1236I CGCG 1 cut(s) 1578
Bsh1285I CGRYCG 1 cut(s) 2264
BshFI GGCC 6 cut(s) 326, 400, 479, 1203, 1763, 2012
BshNI GGYRCC 1 cut(s) 80
BshVI ATCGAT 1 cut(s) 2548
BsiEI CGRYCG 1 cut(s) 2264
BsiHKAI GWGCWC 4 cut(s) 168, 1684, 2117, 2504
BsiSI CCGG 3 cut(s) 84, 2363, 3163
BslFI GGGAC 4 cut(s) 35, 140, 688, 2208
BslI CCNNNNNNNGG 7 cut(s) 150, 226, 408, 2330, 2369, 2707, 2936
BsmBI CGTCTC 1 cut(s) 264
BsmFI GGGAC 4 cut(s) 35, 140, 688, 2208
BsmI GAATGC 4 cut(s) 253, 923, 1099, 3177
BsnI GGCC 6 cut(s) 326, 400, 479, 1203, 1763, 2012
Bso31I GGTCTC 3 cut(s) 1334, 1994, 3153
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 4 cut(s) 168, 1684, 2117, 2504
Bsp1407I TGTACA 5 cut(s) 304, 831, 1816, 2175, 2184
Bsp1720I GCTNAGC 1 cut(s) 1287
Bsp68I TCGCGA 1 cut(s) 1578
BspACI CCGC 4 cut(s) 5, 1228, 2621, 3002
BspANI GGCC 6 cut(s) 326, 400, 479, 1203, 1763, 2012
BspCNI CTCAG 3 cut(s) 2152, 2709, 3160
BspDI ATCGAT 1 cut(s) 2548
BspFNI CGCG 1 cut(s) 1578
BspHI TCATGA 3 cut(s) 589, 1269, 1380
BspLI GGNNCC 7 cut(s) 82, 155, 1531, 2223, 2224, 2361, 2892
BspMAI CTGCAG 3 cut(s) 112, 216, 1147
BspMI ACCTGC 2 cut(s) 205, 1590
BspPI GGATC 6 cut(s) 94, 913, 1943, 2064, 2354, 2367
BspT104I TTCGAA 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 1 cut(s) 1675
BspTNI GGTCTC 3 cut(s) 1334, 1994, 3153
BsrDI GCAATG 5 cut(s) 251, 1010, 2208, 2463, 2577
BsrFI RCCGGY 1 cut(s) 3162
BsrGI TGTACA 5 cut(s) 304, 831, 1816, 2175, 2184
BsrI ACTGG 4 cut(s) 1471, 2497, 2695, 3001
BssAI RCCGGY 1 cut(s) 3162
BssECI CCNNGG 9 cut(s) 684, 685, 1098, 1204, 1667, 2119, 2368, 2822, 3185
BssT1I CCWWGG 5 cut(s) 1098, 1204, 1667, 2119, 2368
Bst2UI CCWGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
Bst6I CTCTTC 4 cut(s) 495, 1290, 1952, 2264
BstAFI CTTAAG 1 cut(s) 1675
BstAPI GCANNNNNTGC 3 cut(s) 1151, 1631, 3172
BstAUI TGTACA 5 cut(s) 304, 831, 1816, 2175, 2184
BstBAI YACGTR 1 cut(s) 641
BstBI TTCGAA 1 cut(s) 334
BstF5I GGATG 8 cut(s) 869, 882, 1060, 1741, 2187, 2240, 2908, 3069
BstFNI CGCG 1 cut(s) 1578
BstHHI GCGC 1 cut(s) 182
BstMCI CGRYCG 1 cut(s) 2264
BstNI CCWGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
BstNSI RCATGY 3 cut(s) 665, 2167, 2840
BstSCI CCNGG 6 cut(s) 684, 1744, 2381, 2821, 2865, 3184
BstSFI CTRYAG 5 cut(s) 108, 212, 1002, 1143, 1973
BstSLI GKGCMC 2 cut(s) 168, 2504
BstUI CGCG 1 cut(s) 1578
BstV1I GCAGC 9 cut(s) 94, 452, 797, 994, 2569, 2584, 2921, 3127, 3130
BstV2I GAAGAC 1 cut(s) 2322
BstX2I RGATCY 6 cut(s) 86, 427, 905, 2142, 2359, 3121
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 6 cut(s) 86, 427, 905, 2142, 2359, 3121
Bsu15I ATCGAT 1 cut(s) 2548
BsuRI GGCC 6 cut(s) 326, 400, 479, 1203, 1763, 2012
BsuTUI ATCGAT 1 cut(s) 2548
BtsCI GGATG 8 cut(s) 869, 882, 1060, 1741, 2187, 2240, 2908, 3069
BtsI GCAGTG 2 cut(s) 656, 2587
BtsIMutI CAGTG 8 cut(s) 577, 656, 941, 1391, 2194, 2504, 2587, 2667
BtuMI TCGCGA 1 cut(s) 1578
BveI ACCTGC 2 cut(s) 205, 1590
CaiI CAGNNNCTG 2 cut(s) 1151, 1946
CciI TCATGA 3 cut(s) 589, 1269, 1380
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 3162
Cfr13I GGNCC 5 cut(s) 217, 399, 2010, 2222, 2365
ClaI ATCGAT 1 cut(s) 2548
DraI TTTAAA 1 cut(s) 3061
DriI GACNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 4 cut(s) 495, 1290, 1952, 2264
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 4 cut(s) 495, 1290, 1952, 2264
EciI GGCGGA 1 cut(s) 3017
Ecl136II GAGCTC 2 cut(s) 1682, 2115
Eco130I CCWWGG 5 cut(s) 1098, 1204, 1667, 2119, 2368
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 2 cut(s) 1684, 2117
Eco31I GGTCTC 3 cut(s) 1334, 1994, 3153
Eco47I GGWCC 3 cut(s) 217, 2222, 2365
Eco53kI GAGCTC 2 cut(s) 1682, 2115
Eco57I CTGAAG 4 cut(s) 746, 909, 2072, 2648
EcoICRI GAGCTC 2 cut(s) 1682, 2115
EcoO109I RGGNCCY 2 cut(s) 217, 2222
EcoRI GAATTC 2 cut(s) 803, 2731
EcoRII CCWGG 6 cut(s) 684, 1744, 2381, 2821, 2865, 3184
EcoT14I CCWWGG 5 cut(s) 1098, 1204, 1667, 2119, 2368
EcoT22I ATGCAT 2 cut(s) 253, 1734
EcoT38I GRGCYC 2 cut(s) 1684, 2117
ErhI CCWWGG 5 cut(s) 1098, 1204, 1667, 2119, 2368
Esp3I CGTCTC 1 cut(s) 264
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FaqI GGGAC 4 cut(s) 35, 140, 688, 2208
FauNDI CATATG 1 cut(s) 1929
FbaI TGATCA 1 cut(s) 2514
FokI GGATG 8 cut(s) 856, 869, 1067, 1728, 2194, 2227, 2915, 3056
FriOI GRGCYC 2 cut(s) 1684, 2117
GlaI GCGC 1 cut(s) 181
GsaI CCCAGC 1 cut(s) 1510
GsuI CTGGAG 1 cut(s) 1767
HaeIII GGCC 6 cut(s) 326, 400, 479, 1203, 1763, 2012
HapII CCGG 3 cut(s) 84, 2363, 3163
HhaI GCGC 1 cut(s) 182
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HindIII AAGCTT 4 cut(s) 415, 891, 2630, 2966
HpaII CCGG 3 cut(s) 84, 2363, 3163
HphI GGTGA 7 cut(s) 812, 1481, 1576, 1886, 2278, 2384, 2509
Hpy166II GTNNAC 4 cut(s) 166, 1039, 2176, 2502
Hpy8I GTNNAC 4 cut(s) 166, 1039, 2176, 2502
Hpy99I CGWCG 3 cut(s) 68, 71, 1424
HpyAV CCTTC 8 cut(s) 82, 218, 731, 773, 1342, 2047, 2210, 2881
HpyCH4IV ACGT 3 cut(s) 42, 640, 2126
HpySE526I ACGT 3 cut(s) 42, 640, 2126
HspAI GCGC 1 cut(s) 180
KflI GGGWCCC 1 cut(s) 2222
Ksp22I TGATCA 1 cut(s) 2514
LmnI GCTCC 4 cut(s) 159, 495, 2120, 2890
Lsp1109I GCAGC 9 cut(s) 94, 452, 797, 994, 2569, 2584, 2921, 3127, 3130
LweI GCATC 5 cut(s) 46, 1428, 1750, 2386, 2554
MaeII ACGT 3 cut(s) 42, 640, 2126
MaeIII GTNAC 5 cut(s) 852, 1404, 2204, 2372, 2418
MfeI CAATTG 1 cut(s) 2775
MflI RGATCY 6 cut(s) 86, 427, 905, 2142, 2359, 3121
MhlI GDGCHC 4 cut(s) 168, 1684, 2117, 2504
MlsI TGGCCA 1 cut(s) 479
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 5 cut(s) 710, 1952, 2272, 2414, 2626
MmeI TCCRAC 6 cut(s) 1636, 1804, 2337, 2388, 2688, 2875
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 2 cut(s) 253, 1734
MroXI GAANNNNTTC 3 cut(s) 720, 1299, 3175
MscI TGGCCA 1 cut(s) 479
MslI CAYNNNNRTG 1 cut(s) 975
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 107, 2912
MspCI CTTAAG 1 cut(s) 1675
MspI CCGG 3 cut(s) 84, 2363, 3163
MspR9I CCNGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
MunI CAATTG 1 cut(s) 2775
Mva1269I GAATGC 4 cut(s) 253, 923, 1099, 3177
MvaI CCWGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
MvnI CGCG 1 cut(s) 1578
NdeI CATATG 1 cut(s) 1929
NlaIV GGNNCC 7 cut(s) 82, 155, 1531, 2223, 2224, 2361, 2892
NmeAIII GCCGAG 2 cut(s) 1893, 2038
NmuCI GTSAC 3 cut(s) 1404, 2372, 2418
NruI TCGCGA 1 cut(s) 1578
NsiI ATGCAT 2 cut(s) 253, 1734
NspI RCATGY 3 cut(s) 665, 2167, 2840
NspV TTCGAA 1 cut(s) 334
PaeI GCATGC 1 cut(s) 665
PagI TCATGA 3 cut(s) 589, 1269, 1380
PasI CCCWGGG 1 cut(s) 685
PceI AGGCCT 1 cut(s) 326
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 1425
PctI GAATGC 4 cut(s) 253, 923, 1099, 3177
PdmI GAANNNNTTC 3 cut(s) 720, 1299, 3175
PfeI GAWTC 8 cut(s) 679, 754, 1900, 1933, 2605, 2642, 3035, 3227
PflMI CCANNNNNTGG 1 cut(s) 408
PfoI TCCNGGA 1 cut(s) 1744
PleI GAGTC 5 cut(s) 709, 1951, 2272, 2413, 2625
PpsI GAGTC 5 cut(s) 709, 1951, 2272, 2413, 2625
Ppu21I YACGTR 1 cut(s) 641
PpuMI RGGWCCY 2 cut(s) 217, 2222
Psp124BI GAGCTC 2 cut(s) 1684, 2117
Psp1406I AACGTT 1 cut(s) 2126
Psp5II RGGWCCY 2 cut(s) 217, 2222
Psp6I CCWGG 6 cut(s) 684, 1744, 2381, 2821, 2865, 3184
PspFI CCCAGC 1 cut(s) 1506
PspGI CCWGG 6 cut(s) 684, 1744, 2381, 2821, 2865, 3184
PspN4I GGNNCC 7 cut(s) 82, 155, 1531, 2223, 2224, 2361, 2892
PspPI GGNCC 5 cut(s) 217, 399, 2010, 2222, 2365
PspPPI RGGWCCY 2 cut(s) 217, 2222
PsrI GAACNNNNNNTAC 2 cut(s) 1655, 1687
PstI CTGCAG 3 cut(s) 112, 216, 1147
PstNI CAGNNNCTG 2 cut(s) 1151, 1946
PsuI RGATCY 6 cut(s) 86, 427, 905, 2142, 2359, 3121
PvuII CAGCTG 2 cut(s) 107, 2912
RruI TCGCGA 1 cut(s) 1578
RseI CAYNNNNRTG 1 cut(s) 975
SacI GAGCTC 2 cut(s) 1684, 2117
Sau96I GGNCC 5 cut(s) 217, 399, 2010, 2222, 2365
SbfI CCTGCAGG 1 cut(s) 216
ScaI AGTACT 2 cut(s) 1873, 2977
SchI GAGTC 5 cut(s) 710, 1952, 2272, 2414, 2626
ScrFI CCNGG 6 cut(s) 686, 1746, 2383, 2823, 2867, 3186
SdaI CCTGCAGG 1 cut(s) 216
SduI GDGCHC 4 cut(s) 168, 1684, 2117, 2504
SfaNI GCATC 5 cut(s) 46, 1428, 1750, 2386, 2554
SfcI CTRYAG 5 cut(s) 108, 212, 1002, 1143, 1973
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 3 cut(s) 217, 2222, 2365
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 4 cut(s) 25, 517, 1675, 2282
SmoI CTYRAG 4 cut(s) 25, 517, 1675, 2282
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 1 cut(s) 665
Sse8387I CCTGCAGG 1 cut(s) 216
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 4 cut(s) 5, 1228, 2621, 3002
SspI AATATT 4 cut(s) 367, 2481, 2680, 2790
SstI GAGCTC 2 cut(s) 1684, 2117
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 6 cut(s) 684, 1744, 2381, 2821, 2865, 3184
StyI CCWWGG 5 cut(s) 1098, 1204, 1667, 2119, 2368
TaiI ACGT 3 cut(s) 45, 643, 2129
TaqI TCGA 6 cut(s) 54, 334, 699, 2548, 2608, 2615
TaqII GACCGA 1 cut(s) 2250
TatI WGTACW 9 cut(s) 304, 607, 831, 1816, 1871, 2175, 2184, 2445, 2975
TauI GCSGC 2 cut(s) 8, 1231
TfiI GAWTC 8 cut(s) 679, 754, 1900, 1933, 2605, 2642, 3035, 3227
TscAI CASTG 8 cut(s) 577, 663, 948, 1398, 2194, 2504, 2594, 2674
TseFI GTSAC 3 cut(s) 1404, 2372, 2418
TseI GCWGC 9 cut(s) 107, 440, 785, 1007, 2582, 2597, 2909, 3140, 3143
Tsp45I GTSAC 3 cut(s) 1404, 2372, 2418
TspGWI ACGGA 2 cut(s) 288, 791
TspRI CASTG 8 cut(s) 577, 663, 948, 1398, 2194, 2504, 2594, 2674
Van91I CCANNNNNTGG 1 cut(s) 408
Vha464I CTTAAG 1 cut(s) 1675
VneI GTGCAC 2 cut(s) 164, 2500
VpaK11BI GGWCC 3 cut(s) 217, 2222, 2365
XapI RAATTY 7 cut(s) 803, 1177, 1805, 2386, 2524, 2731, 3098
XceI RCATGY 3 cut(s) 665, 2167, 2840
XmaJI CCTAGG 1 cut(s) 2368
XmnI GAANNNNTTC 3 cut(s) 720, 1299, 3175
ZrmI AGTACT 2 cut(s) 1873, 2977
Zsp2I ATGCAT 2 cut(s) 253, 1734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.