MD01G1234500.v1.1

Chromosome region maintenance protein 1 exportin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0009963
Physical Location & Seq
Reverse (-)
32212690 .. 32223112
10423 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1234500.v1.1.491

Sequence Viewer

Length: 3231 bp
ATGGCGGCTGAGAAGCTAAGGGACTTGAGCCAGCCGATTGACGTTGGCCTGCTCGATGCCACCGTCGCCGCCTTCTACGGCACCGGATCTAAGGAGGAGAGGACAGCTGCAGACCAGATATTGAGGGACTTGCAAAACAATCCTGATATGTGGCTCCAAGTTGTGCACATTTTACAGAGCGCAAAGAACCTAAACACCAAGTTCTTTGCCTTGCAGGTCTTAGAAGGGGTTATCAAGTACAGGTGGAATGCATTGCCTGTTGAACAGCGAGACGGAATGAAAAATTATATCTCTGATGTTATTGTACAGCTATCAAGTAATGAGGCCTCTTTTCGAATGGAAAGACTTTATGTCAGCAAACTCAATGTTATATTGGTTCAGATTTTAAAGCATGATTGGCCCACCAAATGGCGAAGCTTTATTCCGGATCTTGTATCAGCAGCTAAAACTAGTGAAACCATTTGTGAAAATTGTATGGCCATATTAAAGCTTCTAAGCGAAGAGGTTTTTGATTTCTCAAGGGGGGAAATGACACAGTTGAAGATTAAAGAGCTTAAACAATCATTGAACAGTGAGTTTCAACTCATTCATGAGTTATGCTTATATGTACTATCAGCCTCTCAACGAACTGAGCTGATACGTGCAACATTATCCACATTGCATGCTTTCCTCTCCTGGATTCCCCTGGGCTATATTTTTGAGTCCCCTTTGCTTGAAACCCTTCTGAAGTTTTTTCCCATGCCTTCATATCGGAATCTTACCCTTCAGTGTCTAACGGAGGTTGCAGCACTTACTTTCGGTGAATTCTATAATGCACAGTATGTTAAGATGTACAGTATATTCATGGTGCAGTTACAGACTATTCTCCCACCCACCACAAACATACCTGAAGCTTACACAAATGGATCTGGCGAGGAACAGGCATTCATTCAGAACTTGGCACTGTTTCTCACTTCGTTTTACAAGGCGCATATTCGTGTTCTTGAAACCACACAAGAGACTATAGCTGCATTGCTGATGGGTCTTGAATATCTTATAAACATCTCATATGTGGATGACACCGAAGTTTTTAAGGTTTGCTTAGACTATTGGAATGCTTTGGTTTTGGAACTGTTTGAGGCACATCATAATCTGGATAACCCTGCAGCATCTGCCAATATGATGGGGTTGCAGATGAATTTGCTTCCTAGTATGGTTGATGGCATTGGCTCACAACTTTTGCAAAGGCGGCAAATATATGTTGGTATTATGTCAAAGTTGAGGTTGCTCATGATCTGTCGTATGGCTAAGCCAGAAGAGGTTATCATTGTTGAAGATGAGAATGGCAACATTGTTCGTGAGACCTTGAAGGACAATGATGTTCTAGTTCAATATAAGATCATGAGGGAGACGCTGATATATTTGTCACATCTTGACCACGATGATACCGAGAAGCAGATGCTAAAGAAATTAAACAAACAACTGACTGGTGAGGATTGGGCATGGAACAACTTAAACACATTATGTTGGGCAATAGGGTCTATATCTGGTTCCATGATGGAAGAGCAGGAAAATAGATTTTTGGTGATGGTCATTCGTGACTTGCTGAACTTGTGTGAAATCATAAAAGGGAAAGATAATAAAGCAGTTATTGCAAGCAATATCATGTATGTTGTCGGACAGTACCCAAGGTTCTTAAGAGCTCATTGGAAGTTCCTAAAGACTGTTGTCAATAAGTTGTTTGAGTTTATGCACGAAACACATCCTGGAGTCCAGGACATGGCCTGTGACACATTCTTGAAAATTGTTCAAAAGTGCAAGCGTAAATTTGTTATTGTACAGGTTGGAGAAAATGAACCATTTGTGTCTGAACTCCTGACAAGCCTGCCGAATACTGTTGGCGATCTTCAGCCTCACCAGATTCATACTTTCTATGAAGCTGTTGGTCATATGATTCAAGCAGAGTCTGATCCCAAGAAGAGAGAAGAATATCTACAGAGATTGATGAGTCTCCCAAATCAGAAATGGGCCGAGATCATAGGGCAAGCACGCTTAAGTGTTGATTTCCTGAAGGATCAGGAGGTAATTCGGACCGTGCTTAATATATTACAGACAAATACTAGCGTTGCGAGCTCCCTTGGGACGTTTTTCCTGTCTCAGATCTCAATGATCTTTCTGGACATGCTTAATGTGTACAGGATGTACAGTGAGCTTGTATCTAGTAACATTGCGGAAGGGGGTCCCTTTGCTTCTAAAACATCCTATGTGAAACTTCTACGGTCGGTGAAGAGGGAGACTCTCAAGTTGATTGAGACATTCTTGGACAAGGCTGAAGACCAACCACAGATTGGAAAACAAATTGTGCCTCCCATGTTGGATCCAGTCCTAGGCGACTATGCTAGGAATTTGCCTGATGCTAGAGAGTCAGAGGTTTTGTCACTTTTTGCCACTATCATAAATAAGTACAAGGGTGCAATGATAGATGATGTGCCAAGAATATTTGAAGCTGTTTTCCAGTGCACATTGGAGATGATCACAAAAAATTTTGAAGATTACCCAGAGCATCGTTTGAAGTTCTTTTCTTTACTTCGTGCCATTGCTGCACACTGCTTTGCTGCATTGATTCGATTGTCGAGTCCGCAACTAAAGCTTGTCATGGATTCAATTATATGGGCGTTTCGGCACACCGAAAGAAATATTGCTGAAACTGGGCTGAACCTGTTGTTGGAAATGCTGAGAAACTTTCAGAAATCAGAGTTCTGTAATCAGTTTTACCGTACGTACTTTCTGACAATTGAGCAAGAAATATTTGCTGTCTTGACTGATACATTTCATAAACCTGGGTTCAAGTTGCATGTCTTGGTTCTCCAACATTTGTTCAGCCTGGTGGGAAGTGATCTGTTGAAGGAGCCTTTGTGGGATGTTGCAGCTGTTCCTTATCCATATCCTAATAATGGAATGTTTGTTCGTGAATATACAATAAAGCTTTTGAGTACTTCATTCCCAAACATGACTGGGACGGAGGTTACTCAATTTGTGAATGGACTATTTGAATCAACTGCTGACGTACCCACTTTTAAAAATCACATCCGAGACTTCCTAGTGCAATCCAAAGAATTTTCAGCACAGGACAACAAAGATCTTTATGCAGAGGAGGCTGCTGCTCAGAGAGAGAAAGATCGGCAACGAATGCTATCTATTCCTGGGCTTATTGCCCCCAATGAAATACAGGACGAAATGGTTGATTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

1077

Amino Acids

123.52

Weight (kDa)

5.53

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 37 - 103 8.4e-16 Importin-beta N-terminal domain
Xpo1 PF08389 115 - 258 1.8e-42 Exportin 1-like protein
CRM1_repeat PF18777 337 - 372 1.4e-17 Chromosome region maintenance or exportin repeat
CRM1_repeat_2 PF18784 409 - 476 2.6e-30 CRM1 / Exportin repeat 2
CRM1_repeat_3 PF18787 490 - 539 5.1e-26 CRM1 / Exportin repeat 3
CRM1_C PF08767 713 - 1034 2.4e-131 CRM1 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03110 AT5G17020 AT5G17020
fragaria_vesca FvH4_7g33850 FvH4_7g33850
malus_domestica MD01G1234500.v1.1 MD07G1307000.v1.1
prunus_persica Prupe.2G324800_v2.0.a1 Prupe.2G324800_v2.0.a1
pyrus_communis pycom01g24280 pycom07g28000
rosa_chinensis RchiOBHm_Chr1g0383961
rosa_laevigata RLG00000026083
rosa_multiflora Rmu_sc0005139.1_g000024
rosa_roxburghii Rroxscaffold_4G00277100
rosa_rugosa Rorug01G0443900
rosa_samantha Rh1AG469400 Rh1BG427100 Rh1CG439900 Rh1DG459900
rosa_wichuraiana Rw1G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1037
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 80
AccB7I CCANNNNNTGG 3 cut(s) 408, 1759, 2327
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 5 cut(s) 5, 69, 1228, 2210, 2618
AclWI GGATC 7 cut(s) 94, 435, 913, 1943, 2061, 2351, 2364
AcoI YGGCCR 1 cut(s) 477
AcsI RAATTY 6 cut(s) 803, 1177, 1805, 2383, 2521, 3095
AcuI CTGAAG 6 cut(s) 746, 749, 909, 1871, 2069, 2331
AfiI CCNNNNNNNGG 6 cut(s) 408, 1759, 2327, 2366, 2704, 2933
AflII CTTAAG 2 cut(s) 1675, 2032
AhdI GACNNNNNGTC 1 cut(s) 350
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 7 cut(s) 674, 684, 1744, 1752, 2818, 2862, 3181
AjuI GAANNNNNNNTTGG 2 cut(s) 2687, 2719
AloI GAACNNNNNNTCC 2 cut(s) 2928, 2960
Alw21I GWGCWC 4 cut(s) 168, 1684, 2114, 2501
Alw26I GTCTC 9 cut(s) 264, 992, 1334, 1382, 1994, 2139, 2267, 2285, 3066
Alw44I GTGCAC 2 cut(s) 164, 2497
AlwI GGATC 7 cut(s) 94, 435, 913, 1943, 2061, 2351, 2364
AlwNI CAGNNNCTG 2 cut(s) 1151, 1946
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 6 cut(s) 46, 324, 398, 477, 1761, 2007
ApaLI GTGCAC 2 cut(s) 164, 2497
ApoI RAATTY 6 cut(s) 803, 1177, 1805, 2383, 2521, 3095
Asp700I GAANNNNTTC 1 cut(s) 720
AspA2I CCTAGG 1 cut(s) 2365
AspLEI GCGC 2 cut(s) 182, 970
AspS9I GGNCC 4 cut(s) 399, 2007, 2070, 2219
AsuHPI GGTGA 5 cut(s) 812, 1481, 1576, 1886, 2275
AsuII TTCGAA 1 cut(s) 334
AvaII GGWCC 2 cut(s) 2070, 2219
AvrII CCTAGG 1 cut(s) 2365
BaeGI GKGCMC 2 cut(s) 168, 2501
BalI TGGCCA 1 cut(s) 479
BamHI GGATCC 1 cut(s) 2356
BanI GGYRCC 1 cut(s) 80
BanII GRGCYC 2 cut(s) 1684, 2114
BarI GAAGNNNNNNTAC 2 cut(s) 1956, 1988
BbsI GAAGAC 1 cut(s) 2319
Bbv12I GWGCWC 4 cut(s) 168, 1684, 2114, 2501
BccI CCATC 5 cut(s) 1012, 1156, 1193, 1531, 1561
BceAI ACGGC 1 cut(s) 94
BciT130I CCWGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
BclI TGATCA 1 cut(s) 2511
BcoDI GTCTC 9 cut(s) 264, 992, 1334, 1382, 1994, 2139, 2267, 2285, 3066
BcuI ACTAGT 1 cut(s) 449
BfmI CTRYAG 4 cut(s) 108, 1002, 1143, 1973
BfrI CTTAAG 2 cut(s) 1675, 2032
BfuAI ACCTGC 1 cut(s) 205
BglII AGATCT 2 cut(s) 2139, 3118
BlnI CCTAGG 1 cut(s) 2365
BlpI GCTNAGC 1 cut(s) 1287
BmcAI AGTACT 1 cut(s) 2974
Bme1390I CCNGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
Bme18I GGWCC 2 cut(s) 2070, 2219
BmeRI GACNNNNNGTC 1 cut(s) 350
BmgT120I GGNCC 4 cut(s) 399, 2007, 2070, 2219
BmiI GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2221, 2358, 2889
BmrFI CCNGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
BmrI ACTGGG 2 cut(s) 2697, 3003
BmsI GCATC 5 cut(s) 46, 1157, 1428, 2383, 2551
BmuI ACTGGG 2 cut(s) 2697, 3003
BoxI GACNNNNGTC 1 cut(s) 1706
BpiI GAAGAC 1 cut(s) 2319
BplI GAGNNNNNCTC 2 cut(s) 2260, 2292
BpmI CTGGAG 1 cut(s) 1767
Bpu10I CCTNAGC 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 1287
Bpu14I TTCGAA 1 cut(s) 334
BpuEI CTTGAG 3 cut(s) 46, 502, 2264
BsaAI YACGTR 2 cut(s) 641, 2760
BsaI GGTCTC 1 cut(s) 1334
BsaJI CCNNGG 7 cut(s) 684, 685, 1667, 2116, 2365, 2819, 3182
BsaWI WCCGGW 2 cut(s) 83, 424
BsaXI ACNNNNNCTCC 2 cut(s) 2879, 2909
Bsc4I CCNNNNNNNGG 6 cut(s) 408, 1759, 2327, 2366, 2704, 2933
Bse1I ACTGG 5 cut(s) 1471, 2360, 2494, 2692, 2998
Bse3DI GCAATG 6 cut(s) 251, 656, 1010, 2205, 2460, 2574
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
BseDI CCNNGG 7 cut(s) 684, 685, 1667, 2116, 2365, 2819, 3182
BseGI GGATG 6 cut(s) 1060, 1741, 2184, 2237, 2905, 3066
BseLI CCNNNNNNNGG 6 cut(s) 408, 1759, 2327, 2366, 2704, 2933
BseMI GCAATG 6 cut(s) 251, 656, 1010, 2205, 2460, 2574
BseMII CTCAG 4 cut(s) 621, 2150, 2705, 3158
BseNI ACTGG 5 cut(s) 1471, 2360, 2494, 2692, 2998
BseRI GAGGAG 2 cut(s) 110, 3146
BseSI GKGCMC 2 cut(s) 168, 2501
BsgI GTGCAG 2 cut(s) 869, 2565
Bsh1285I CGRYCG 1 cut(s) 2261
BshFI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
BshNI GGYRCC 1 cut(s) 80
BsiEI CGRYCG 1 cut(s) 2261
BsiHKAI GWGCWC 4 cut(s) 168, 1684, 2114, 2501
BsiSI CCGG 2 cut(s) 84, 425
BsiWI CGTACG 1 cut(s) 2756
BslFI GGGAC 6 cut(s) 35, 140, 688, 2134, 2205, 3010
BslI CCNNNNNNNGG 6 cut(s) 408, 1759, 2327, 2366, 2704, 2933
BsmAI GTCTC 9 cut(s) 264, 992, 1334, 1382, 1994, 2139, 2267, 2285, 3066
BsmBI CGTCTC 2 cut(s) 264, 1382
BsmFI GGGAC 6 cut(s) 35, 140, 688, 2134, 2205, 3010
BsmI GAATGC 4 cut(s) 253, 923, 1099, 3174
BsnI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
Bso31I GGTCTC 1 cut(s) 1334
Bsp119I TTCGAA 1 cut(s) 334
Bsp1286I GDGCHC 4 cut(s) 168, 1684, 2114, 2501
Bsp13I TCCGGA 1 cut(s) 424
Bsp1407I TGTACA 5 cut(s) 304, 831, 1816, 2172, 2181
Bsp1720I GCTNAGC 1 cut(s) 1287
BspACI CCGC 5 cut(s) 5, 69, 1228, 2210, 2618
BspANI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
BspCNI CTCAG 4 cut(s) 622, 2149, 2706, 3157
BspEI TCCGGA 1 cut(s) 424
BspHI TCATGA 3 cut(s) 589, 1269, 1380
BspLI GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2221, 2358, 2889
BspMAI CTGCAG 2 cut(s) 112, 1147
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 7 cut(s) 94, 435, 913, 1943, 2061, 2351, 2364
BspQI GCTCTTC 1 cut(s) 1536
BspT104I TTCGAA 1 cut(s) 334
BspT107I GGYRCC 1 cut(s) 80
BspTI CTTAAG 2 cut(s) 1675, 2032
BspTNI GGTCTC 1 cut(s) 1334
BsrDI GCAATG 6 cut(s) 251, 656, 1010, 2205, 2460, 2574
BsrGI TGTACA 5 cut(s) 304, 831, 1816, 2172, 2181
BsrI ACTGG 5 cut(s) 1471, 2360, 2494, 2692, 2998
BssECI CCNNGG 7 cut(s) 684, 685, 1667, 2116, 2365, 2819, 3182
BssT1I CCWWGG 3 cut(s) 1667, 2116, 2365
Bst2UI CCWGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
Bst6I CTCTTC 5 cut(s) 495, 1290, 1536, 1952, 2261
BstAFI CTTAAG 2 cut(s) 1675, 2032
BstAPI GCANNNNNTGC 3 cut(s) 1151, 1631, 3169
BstAUI TGTACA 5 cut(s) 304, 831, 1816, 2172, 2181
BstBAI YACGTR 2 cut(s) 641, 2760
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 9 cut(s) 32, 50, 663, 1636, 1799, 1865, 2025, 2029, 2110
BstF5I GGATG 6 cut(s) 1060, 1741, 2184, 2237, 2905, 3066
BstHHI GCGC 2 cut(s) 182, 970
BstMAI GTCTC 9 cut(s) 264, 992, 1334, 1382, 1994, 2139, 2267, 2285, 3066
BstMCI CGRYCG 1 cut(s) 2261
BstNI CCWGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
BstNSI RCATGY 3 cut(s) 665, 2164, 2837
BstPAI GACNNNNGTC 1 cut(s) 1706
BstSCI CCNGG 7 cut(s) 674, 684, 1744, 1752, 2818, 2862, 3181
BstSFI CTRYAG 4 cut(s) 108, 1002, 1143, 1973
BstSLI GKGCMC 2 cut(s) 168, 2501
BstSNI TACGTA 1 cut(s) 2760
BstV2I GAAGAC 1 cut(s) 2319
BstX2I RGATCY 6 cut(s) 86, 427, 905, 2139, 2356, 3118
BstXI CCANNNNNNTGG 1 cut(s) 1162
BstYI RGATCY 6 cut(s) 86, 427, 905, 2139, 2356, 3118
BsuRI GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
BtsCI GGATG 6 cut(s) 1060, 1741, 2184, 2237, 2905, 3066
BtsI GCAGTG 1 cut(s) 2584
BtsIMutI CAGTG 6 cut(s) 577, 773, 941, 2191, 2501, 2584
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 9 cut(s) 32, 50, 663, 1636, 1799, 1865, 2025, 2029, 2110
CaiI CAGNNNCTG 2 cut(s) 1151, 1946
CciI TCATGA 3 cut(s) 589, 1269, 1380
CfoI GCGC 2 cut(s) 182, 970
Cfr13I GGNCC 4 cut(s) 399, 2007, 2070, 2219
CpoI CGGWCCG 1 cut(s) 2070
CseI GACGC 1 cut(s) 1399
CspI CGGWCCG 1 cut(s) 2070
DraI TTTAAA 2 cut(s) 387, 3058
DriI GACNNNNNGTC 1 cut(s) 350
EaeI YGGCCR 1 cut(s) 477
Eam1104I CTCTTC 5 cut(s) 495, 1290, 1536, 1952, 2261
Eam1105I GACNNNNNGTC 1 cut(s) 350
EarI CTCTTC 5 cut(s) 495, 1290, 1536, 1952, 2261
Ecl136II GAGCTC 2 cut(s) 1682, 2112
Eco105I TACGTA 1 cut(s) 2760
Eco130I CCWWGG 3 cut(s) 1667, 2116, 2365
Eco147I AGGCCT 1 cut(s) 326
Eco24I GRGCYC 2 cut(s) 1684, 2114
Eco31I GGTCTC 1 cut(s) 1334
Eco47I GGWCC 2 cut(s) 2070, 2219
Eco53kI GAGCTC 2 cut(s) 1682, 2112
Eco57I CTGAAG 6 cut(s) 746, 749, 909, 1871, 2069, 2331
EcoICRI GAGCTC 2 cut(s) 1682, 2112
EcoO109I RGGNCCY 1 cut(s) 2219
EcoRI GAATTC 1 cut(s) 803
EcoRII CCWGG 7 cut(s) 674, 684, 1744, 1752, 2818, 2862, 3181
EcoT14I CCWWGG 3 cut(s) 1667, 2116, 2365
EcoT22I ATGCAT 1 cut(s) 253
EcoT38I GRGCYC 2 cut(s) 1684, 2114
ErhI CCWWGG 3 cut(s) 1667, 2116, 2365
Esp3I CGTCTC 2 cut(s) 264, 1382
FalI AAGNNNNNCTT 2 cut(s) 1064, 1096
FaqI GGGAC 6 cut(s) 35, 140, 688, 2134, 2205, 3010
FauNDI CATATG 2 cut(s) 1048, 1929
FbaI TGATCA 1 cut(s) 2511
FokI GGATG 6 cut(s) 1067, 1728, 2191, 2224, 2912, 3053
FriOI GRGCYC 2 cut(s) 1684, 2114
GlaI GCGC 2 cut(s) 181, 969
GsuI CTGGAG 1 cut(s) 1767
HaeIII GGCC 6 cut(s) 48, 326, 400, 479, 1763, 2009
HapII CCGG 2 cut(s) 84, 425
HgaI GACGC 1 cut(s) 1399
HhaI GCGC 2 cut(s) 182, 970
Hin6I GCGC 2 cut(s) 180, 968
HinP1I GCGC 2 cut(s) 180, 968
HindIII AAGCTT 5 cut(s) 415, 488, 891, 2627, 2963
HpaII CCGG 2 cut(s) 84, 425
HphI GGTGA 5 cut(s) 812, 1481, 1576, 1886, 2275
Hpy166II GTNNAC 3 cut(s) 166, 2173, 2499
Hpy8I GTNNAC 3 cut(s) 166, 2173, 2499
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 9 cut(s) 82, 218, 731, 753, 773, 1342, 2044, 2207, 2878
HpyCH4IV ACGT 5 cut(s) 42, 640, 2123, 2759, 3045
HpySE526I ACGT 5 cut(s) 42, 640, 2123, 2759, 3045
HspAI GCGC 2 cut(s) 180, 968
KflI GGGWCCC 1 cut(s) 2219
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 2511
LguI GCTCTTC 1 cut(s) 1536
LmnI GCTCC 3 cut(s) 159, 2117, 2887
LweI GCATC 5 cut(s) 46, 1157, 1428, 2383, 2551
MaeII ACGT 5 cut(s) 42, 640, 2123, 2759, 3045
MaeIII GTNAC 7 cut(s) 852, 1404, 1577, 1766, 2201, 2415, 3004
MfeI CAATTG 1 cut(s) 2772
MflI RGATCY 6 cut(s) 86, 427, 905, 2139, 2356, 3118
MhlI GDGCHC 4 cut(s) 168, 1684, 2114, 2501
MlsI TGGCCA 1 cut(s) 479
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 7 cut(s) 710, 1758, 1952, 1996, 2269, 2411, 2623
MmeI TCCRAC 5 cut(s) 1636, 1804, 2334, 2685, 2872
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 253
MroI TCCGGA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 720
MscI TGGCCA 1 cut(s) 479
MslI CAYNNNNRTG 1 cut(s) 975
Msp20I TGGCCA 1 cut(s) 479
MspA1I CMGCKG 2 cut(s) 107, 2909
MspCI CTTAAG 2 cut(s) 1675, 2032
MspI CCGG 2 cut(s) 84, 425
MspR9I CCNGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
MunI CAATTG 1 cut(s) 2772
Mva1269I GAATGC 4 cut(s) 253, 923, 1099, 3174
MvaI CCWGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
NdeI CATATG 2 cut(s) 1048, 1929
NlaIV GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2221, 2358, 2889
NmeAIII GCCGAG 1 cut(s) 2035
NmuCI GTSAC 4 cut(s) 1404, 1577, 1766, 2415
NsiI ATGCAT 1 cut(s) 253
NspI RCATGY 3 cut(s) 665, 2164, 2837
NspV TTCGAA 1 cut(s) 334
PaeI GCATGC 1 cut(s) 665
PagI TCATGA 3 cut(s) 589, 1269, 1380
PasI CCCWGGG 1 cut(s) 685
PceI AGGCCT 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 1536
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 1425
PctI GAATGC 4 cut(s) 253, 923, 1099, 3174
PdmI GAANNNNTTC 1 cut(s) 720
PfeI GAWTC 8 cut(s) 679, 754, 1900, 1933, 2602, 2639, 3032, 3224
Pfl23II CGTACG 1 cut(s) 2756
PflMI CCANNNNNTGG 3 cut(s) 408, 1759, 2327
PfoI TCCNGGA 3 cut(s) 674, 1744, 1752
PleI GAGTC 7 cut(s) 709, 1757, 1951, 1995, 2269, 2410, 2622
PpsI GAGTC 7 cut(s) 709, 1757, 1951, 1995, 2269, 2410, 2622
Ppu21I YACGTR 2 cut(s) 641, 2760
PpuMI RGGWCCY 1 cut(s) 2219
PshAI GACNNNNGTC 1 cut(s) 1706
PsiI TTATAA 1 cut(s) 1037
Psp124BI GAGCTC 2 cut(s) 1684, 2114
Psp5II RGGWCCY 1 cut(s) 2219
Psp6I CCWGG 7 cut(s) 674, 684, 1744, 1752, 2818, 2862, 3181
PspGI CCWGG 7 cut(s) 674, 684, 1744, 1752, 2818, 2862, 3181
PspLI CGTACG 1 cut(s) 2756
PspN4I GGNNCC 7 cut(s) 82, 155, 1531, 2220, 2221, 2358, 2889
PspPI GGNCC 4 cut(s) 399, 2007, 2070, 2219
PspPPI RGGWCCY 1 cut(s) 2219
PsrI GAACNNNNNNTAC 2 cut(s) 1655, 1687
PstI CTGCAG 2 cut(s) 112, 1147
PstNI CAGNNNCTG 2 cut(s) 1151, 1946
PsuI RGATCY 6 cut(s) 86, 427, 905, 2139, 2356, 3118
PvuII CAGCTG 2 cut(s) 107, 2909
RseI CAYNNNNRTG 1 cut(s) 975
Rsr2I CGGWCCG 1 cut(s) 2070
RsrII CGGWCCG 1 cut(s) 2070
SacI GAGCTC 2 cut(s) 1684, 2114
SapI GCTCTTC 1 cut(s) 1536
Sau96I GGNCC 4 cut(s) 399, 2007, 2070, 2219
ScaI AGTACT 1 cut(s) 2974
SchI GAGTC 7 cut(s) 710, 1758, 1952, 1996, 2269, 2411, 2623
ScrFI CCNGG 7 cut(s) 676, 686, 1746, 1754, 2820, 2864, 3183
SduI GDGCHC 4 cut(s) 168, 1684, 2114, 2501
SfaNI GCATC 5 cut(s) 46, 1157, 1428, 2383, 2551
SfcI CTRYAG 4 cut(s) 108, 1002, 1143, 1973
SfuI TTCGAA 1 cut(s) 334
SinI GGWCC 2 cut(s) 2070, 2219
SmiMI CAYNNNNRTG 1 cut(s) 975
SmlI CTYRAG 5 cut(s) 25, 517, 1675, 2032, 2279
SmoI CTYRAG 5 cut(s) 25, 517, 1675, 2032, 2279
SnaBI TACGTA 1 cut(s) 2760
SpeI ACTAGT 1 cut(s) 449
SphI GCATGC 1 cut(s) 665
SseBI AGGCCT 1 cut(s) 326
SsiI CCGC 5 cut(s) 5, 69, 1228, 2210, 2618
SspI AATATT 3 cut(s) 2478, 2677, 2787
SstI GAGCTC 2 cut(s) 1684, 2114
StuI AGGCCT 1 cut(s) 326
StyD4I CCNGG 7 cut(s) 674, 684, 1744, 1752, 2818, 2862, 3181
StyI CCWWGG 3 cut(s) 1667, 2116, 2365
TaiI ACGT 5 cut(s) 45, 643, 2126, 2762, 3048
TaqI TCGA 4 cut(s) 54, 334, 2605, 2612
TatI WGTACW 9 cut(s) 237, 304, 607, 831, 1816, 2172, 2181, 2442, 2972
TauI GCSGC 3 cut(s) 8, 71, 1231
TfiI GAWTC 8 cut(s) 679, 754, 1900, 1933, 2602, 2639, 3032, 3224
TscAI CASTG 6 cut(s) 577, 773, 948, 2191, 2501, 2591
TseFI GTSAC 4 cut(s) 1404, 1577, 1766, 2415
Tsp45I GTSAC 4 cut(s) 1404, 1577, 1766, 2415
TspGWI ACGGA 3 cut(s) 288, 791, 3014
TspRI CASTG 6 cut(s) 577, 773, 948, 2191, 2501, 2591
Van91I CCANNNNNTGG 3 cut(s) 408, 1759, 2327
Vha464I CTTAAG 2 cut(s) 1675, 2032
VneI GTGCAC 2 cut(s) 164, 2497
VpaK11BI GGWCC 2 cut(s) 2070, 2219
XapI RAATTY 6 cut(s) 803, 1177, 1805, 2383, 2521, 3095
XceI RCATGY 3 cut(s) 665, 2164, 2837
XcmI CCANNNNNNNNNTGG 2 cut(s) 2001, 2324
XmaJI CCTAGG 1 cut(s) 2365
XmnI GAANNNNTTC 1 cut(s) 720
ZrmI AGTACT 1 cut(s) 2974
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.