AT5G17020

ribosomal small subunit export from nucleus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0009963
Physical Location & Seq
Forward (+)
5594632 .. 5602969
8338 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17020.1

Sequence Viewer

Length: 3228 bp
ATGGCGGCTGAGAAGTTAAGGGACTTGAGCCAGCCGATTGACGTCGGTGTGCTCGATGCCACTGTTGCGGCCTTCTTTGTTACCGGATCTAAAGAAGAGAGAGCTGCTGCGGACCAGATTTTGCGGGATTTGCAGGCTAATCCAGATATGTGGCTTCAAGTTGTCCACATTCTACAAAATACAAACAGCTTGGATACCAAGTTCTTTGCTCTGCAGGTTCTAGAAGGTGTTATAAAGTATAGATGGAATGCACTGCCTGTTGAACAACGAGATGGAATGAAAAATTACATCTCAGAGGTTATTGTACAGCTCTCGAGTAATGAAGCATCTTTCAGATCAGAAAGGCTCTATGTCAACAAGCTAAATGTCATTTTGGTCCAGATCGTGAAACATGATTGGCCGGCAAAGTGGACAAGCTTCATTCCTGATCTAGTTGCAGCTGCTAAAACTAGCGAAACTATCTGCGAAAATTGCATGGCCATTTTGAAACTCCTAAGTGAAGAGGTTTTTGATTTCTCAAGAGGAGAAATGACTCAGCAGAAGATTAAAGAGCTGAAACAATCTCTAAACAGTGAGTTTAAACTCATTCATGAGTTATGCCTATATGTCCTCTCAGCTTCTCAAAGACAGGATCTTATACGTGCAACACTGTCTGCATTGCATGCCTATCTTTCCTGGATTCCATTGGGTTACATTTTTGAGTCTACTTTGCTTGAGACCCTCCTTAAATTTTTTCCTGTGCCAGCATATAGGAACCTCACTATTCAATGTCTGACCGAGGTCGCAGCTCTTAATTTCGGGGACTTCTACAATGTTCAATATGTCAAAATGTATACCATATTTATAGGGCAGCTGCGGATAATTCTCCCACCGAGTACAAAGATCCCTGAGGCATATTCCAGTGGAAGTGGTGAAGAACAAGCATTTATCCAGAACCTGGCACTATTTTTCACTTCCTTTTTCAAGTTTCATATTCGAGTCCTAGAATCAACGCCAGAAGTTGTCTCTTTGTTACTCGCTGGTCTAGAATATCTCATTAATATATCTTATGTTGACGACACTGAAGTATTTAAGGTTTGTTTGGACTATTGGAACTCGTTGGTGTTGGAGCTATTTGATGCGCATCATAATTCTGATAACCCTGCAGTAAGTGCAAGCCTGATGGGTTTGCAGCCTTTCCTTCCTGGTATGGTTGATGGCCTTGGTTCTCAAGTCATGCAGCGGCGTCAACTTTATTCTCACCCAATGTCCAAATTAAGAGGGTTAATGATTAACCGCATGGCGAAGCCTGAAGAAGTGCTTATTGTTGAAGATGAAAATGGGAACATCGTTCGTGAAACCATGAAGGACAATGATGTTCTTGTCCAATATAAGATAATGCGGGAGACATTAATCTACCTCTCACACCTTGACCATGATGATACCGAGAAGCAGATGTTGAGGAAGCTAAACAAACAATTAAGTGGGGAGGAATGGGCATGGAACAATTTGAACACTTTGTGCTGGGCTATTGGGTCTATTTCCGGATCTATGGCAGAAGATCAGGAAAACAGGTTTTTGGTGATGGTCATTCGTGATTTGTTGAATTTATGTGAAATTACCAAGGGAAAAGACAATAAAGCCGTTATTGCAAGCAACATCATGTATGTCGTTGGCCAGTATCCAAGATTCTTAAGGGCCCATTGGAAGTTTTTGAAGACAGTTGTGAACAAGTTGTTTGAATTCATGCATGAAACACATCCTGGTGTTCAGGACATGGCCTGTGATACATTCTTGAAAATAGTTCAAAAGTGCAAGCGAAAATTCGTTATTGTACAGGTTGGAGAGAATGAACCATTTGTATCTGAACTTCTAACAGGCCTTGCAACAACTGTTCAAGATCTTGAGCCTCATCAAATACACTCATTTTATGAATCAGTTGGTAATATGATCCAAGCAGAATCAGATCCTCAGAAGAGAGATGAATATCTCCAGAGGTTGATGGCACTCCCCAACCAGAAATGGGCAGAAATCATAGGACAGGCACGCCACAGTGTAGAATTCCTCAAGGATCAAGTTGTGATACGTACAGTGCTAAACATCCTACAGACTAATACTAGTGCTGCTACTTCACTGGGAACATACTTCTTATCCCAAATTTCCTTGATTTTCTTGGATATGTTGAATGTATACAGAATGTACAGTGAGCTTGTGTCAACCAACATTACTGAGGGAGGACCATATGCTTCCAAGACATCTTTTGTAAAACTCTTAAGATCGGTTAAGAGGGAAACACTTAAGCTGATAGAAACCTTTTTAGACAAAGCTGAAGACCAGCCACACATAGGGAAACAATTTGTGCCGCCAATGATGGAATCAGTACTTGGTGACTATGCGAGGAATGTGCCTGATGCTAGGGAATCCGAAGTTCTTTCACTCTTTGCAACGATTATAAACAAGTACAAGGCAACAATGTTAGACGACGTGCCTCACATATTTGAAGCTGTATTCCAGTGTACATTGGAGATGATAACTAAGAACTTTGAAGATTATCCAGAACACCGCCTCAAGTTTTTCTCATTACTCCGTGCTATTGCTACGTTTTGTTTCCCTGCCTTGATAAAGTTATCAAGTCCGCAACTGAAGCTAGTGATGGATTCAATTATCTGGGCATTTAGACATACTGAGAGAAATATTGCTGAAACCGGGCTTAATCTTTTGCTTGAGATGCTGAAAAACTTTCAGCAATCTGAATTTTGTAATCAATTCTACCGGTCATACTTTATGCAAATCGAGCAAGAAATATTTGCCGTTTTGACCGATACCTTCCATAAGCCTGGCTTCAAGCTACATGTGTTGGTGCTGCAGCAACTGTTTTGCCTGCCTGAGAGCGGTGCTTTGACAGAACCCTTGTGGGATGCTACAACCGTTCCTTACCCGTATCCGGACAACGTTGCATTTGTTCGCGAATACACCATTAAGCTACTGAGCTCTTCATTCCCAAACATGACTGCAGCAGAGGTCACACAATTTGTGAATGGACTATACGAGTCTAGAAATGACCCGTCTGGATTTAAGAATAACATTCGTGACTTCCTTGTACAGTCTAAGGAGTTTTCCGCTCAGGATAACAAAGATCTCTATGCTGAGGAAGCAGCTGCACAGAGAGAGAGAGAACGTCAAAGAATGCTTTCAATTCCTGGGCTTATTGCTCCTAATGAGATTCAAGACGAGATGGTGGACTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000054 GO:0000055 GO:0000056 GO:0000122 GO:0000775 GO:0000776 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0005049 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006355 GO:0006357 GO:0006403 GO:0006405 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0006950 GO:0007275 GO:0008104 GO:0008150 GO:0009266 GO:0009408 GO:0009506 GO:0009553 GO:0009555 GO:0009628 GO:0009653 GO:0009826 GO:0009846 GO:0009856 GO:0009860 GO:0009889 GO:0009890 GO:0009892 GO:0009932 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0019904 GO:0022414 GO:0022613 GO:0030054 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031503 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032989 GO:0032991 GO:0033036 GO:0033157 GO:0033750 GO:0034613 GO:0040007 GO:0042221 GO:0042254 GO:0042493 GO:0042886 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044427 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0045184 GO:0045892 GO:0045934 GO:0046822 GO:0046825 GO:0046907 GO:0048229 GO:0048468 GO:0048519 GO:0048523 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051252 GO:0051253 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0051704 GO:0055044 GO:0060255 GO:0060341 GO:0060560 GO:0065007 GO:0070201 GO:0070727 GO:0071166 GO:0071426 GO:0071428 GO:0071702 GO:0071705 GO:0071840 GO:0080090 GO:0090087 GO:0098687 GO:0140104 GO:0140142 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03008 ko03013 ko04013 ko05164 ko05166 ko05169 map03008 map03013 map04013 map05164 map05166 map05169
Pfam Domains
Protein Families
CRM1_C IBN_N Xpo1

Protein Analysis

1075

Amino Acids

123.24

Weight (kDa)

5.39

Isoelectric Point (pI)

43.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBN_N PF03810 37 - 103 8.6e-16 Importin-beta N-terminal domain
Xpo1 PF08389 115 - 258 1.4e-42 Exportin 1-like protein
CRM1_repeat PF18777 337 - 372 7.7e-18 Chromosome region maintenance or exportin repeat
CRM1_repeat_2 PF18784 408 - 475 3.9e-31 CRM1 / Exportin repeat 2
CRM1_repeat_3 PF18787 489 - 538 4e-27 CRM1 / Exportin repeat 3
CRM1_C PF08767 712 - 1033 6.7e-133 CRM1 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0009963)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G03110 AT5G17020 AT5G17020
fragaria_vesca FvH4_7g33850 FvH4_7g33850
malus_domestica MD01G1234500.v1.1 MD07G1307000.v1.1
prunus_persica Prupe.2G324800_v2.0.a1 Prupe.2G324800_v2.0.a1
pyrus_communis pycom01g24280 pycom07g28000
rosa_chinensis RchiOBHm_Chr1g0383961
rosa_laevigata RLG00000026083
rosa_multiflora Rmu_sc0005139.1_g000024
rosa_roxburghii Rroxscaffold_4G00277100
rosa_rugosa Rorug01G0443900
rosa_samantha Rh1AG469400 Rh1BG427100 Rh1CG439900 Rh1DG459900
rosa_wichuraiana Rw1G040300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 233, 2432
AatII GACGTC 1 cut(s) 45
Acc16I TGCGCA 1 cut(s) 1122
Acc36I ACCTGC 1 cut(s) 205
AccB7I CCANNNNNTGG 1 cut(s) 937
AccBSI CCGCTC 2 cut(s) 2871, 3101
AccI GTMKAC 3 cut(s) 704, 833, 2169
AccII CGCG 1 cut(s) 2946
AccIII TCCGGA 2 cut(s) 1523, 2923
AclI AACGTT 1 cut(s) 2931
AclWI GGATC 7 cut(s) 94, 639, 877, 1534, 1924, 1940, 2058
AcoI YGGCCR 3 cut(s) 398, 477, 1654
AcsI RAATTY 7 cut(s) 728, 1585, 1721, 1802, 2039, 2136, 2732
AcuI CTGAAG 4 cut(s) 1083, 1311, 2328, 2642
AcyI GRCGYC 2 cut(s) 42, 1225
AdeI CACNNNGTG 1 cut(s) 1500
AfaI GTAC 9 cut(s) 306, 877, 1815, 2068, 2180, 2361, 2441, 2497, 3081
AfiI CCNNNNNNNGG 5 cut(s) 937, 2002, 2324, 2870, 2923
AflII CTTAAG 3 cut(s) 1672, 2251, 2276
AflIII ACRYGT 1 cut(s) 2830
AgeI ACCGGT 1 cut(s) 2751
AhlI ACTAGT 1 cut(s) 2096
AjiI CACGTC 1 cut(s) 2464
AjnI CCWGG 6 cut(s) 674, 936, 1183, 1741, 2815, 3178
AjuI GAANNNNNNNTTGG 2 cut(s) 2346, 2378
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
Alw21I GWGCWC 2 cut(s) 54, 2972
Alw26I GTCTC 3 cut(s) 710, 1009, 1379
AlwI GGATC 7 cut(s) 94, 639, 877, 1534, 1924, 1940, 2058
AlwNI CAGNNNCTG 2 cut(s) 937, 2851
Ama87I CYCGRG 1 cut(s) 313
Aor13HI TCCGGA 2 cut(s) 1523, 2923
AoxI GGCC 8 cut(s) 69, 398, 477, 1198, 1654, 1677, 1758, 1858
ApaI GGGCCC 1 cut(s) 1681
ApoI RAATTY 7 cut(s) 728, 1585, 1721, 1802, 2039, 2136, 2732
AseI ATTAAT 2 cut(s) 1038, 1391
AsiGI ACCGGT 1 cut(s) 2751
Asp700I GAANNNNTTC 1 cut(s) 3169
AspLEI GCGC 1 cut(s) 1123
AspS9I GGNCC 5 cut(s) 112, 376, 1677, 1678, 2216
AsuC2I CCSGG 1 cut(s) 2686
AsuHPI GGTGA 4 cut(s) 923, 1232, 1573, 2378
AvaI CYCGRG 1 cut(s) 313
AvaII GGWCC 3 cut(s) 112, 376, 2216
AxyI CCTNAGG 1 cut(s) 888
BaeGI GKGCMC 1 cut(s) 1681
BalI TGGCCA 2 cut(s) 479, 1656
BanII GRGCYC 2 cut(s) 1681, 2972
BarI GAAGNNNNNNTAC 2 cut(s) 1833, 1865
BbsI GAAGAC 2 cut(s) 1703, 2316
Bbv12I GWGCWC 2 cut(s) 54, 2972
BbvCI CCTCAGC 1 cut(s) 3126
BccI CCATC 9 cut(s) 237, 266, 1156, 1190, 1558, 1975, 2344, 2626, 3208
BceAI ACGGC 2 cut(s) 1607, 2774
BcgI CGANNNNNNTGC 2 cut(s) 2365, 2399
BciT130I CCWGG 6 cut(s) 676, 938, 1185, 1743, 2817, 3180
BciVI GTATCC 3 cut(s) 187, 1671, 2931
BcnI CCSGG 1 cut(s) 2686
BcoDI GTCTC 3 cut(s) 710, 1009, 1379
BcuI ACTAGT 1 cut(s) 2096
BfaI CTAG 9 cut(s) 221, 431, 450, 983, 1025, 2097, 2394, 2627, 3033
BfmI CTRYAG 5 cut(s) 212, 1143, 2084, 2843, 2991
BfrI CTTAAG 3 cut(s) 1672, 2251, 2276
BfuAI ACCTGC 1 cut(s) 205
BfuI GTATCC 3 cut(s) 187, 1671, 2931
BglII AGATCT 2 cut(s) 1879, 3115
BmcAI AGTACT 1 cut(s) 2361
Bme1390I CCNGG 7 cut(s) 676, 938, 1185, 1743, 2686, 2817, 3180
Bme18I GGWCC 3 cut(s) 112, 376, 2216
BmeT110I CYCGRG 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 2464
BmgT120I GGNCC 5 cut(s) 112, 376, 1677, 1678, 2216
BmiI GGNNCC 2 cut(s) 755, 1679
BmrFI CCNGG 7 cut(s) 676, 938, 1185, 1743, 2686, 2817, 3180
BmrI ACTGGG 1 cut(s) 2123
BmsI GCATC 7 cut(s) 46, 335, 1108, 1132, 2380, 2697, 2887
BmuI ACTGGG 1 cut(s) 2123
BoxI GACNNNNGTC 1 cut(s) 779
BpiI GAAGAC 2 cut(s) 1703, 2316
BpmI CTGGAG 1 cut(s) 1955
Bpu10I CCTNAGC 2 cut(s) 3102, 3126
BpuEI CTTGAG 8 cut(s) 46, 502, 734, 1194, 1904, 2030, 2531, 2723
BpuMI CCSGG 1 cut(s) 2686
BsaAI YACGTR 2 cut(s) 641, 2066
BsaBI GATNNNNATC 2 cut(s) 1122, 1965
BsaHI GRCGYC 2 cut(s) 42, 1225
BsaI GGTCTC 1 cut(s) 710
BsaJI CCNNGG 4 cut(s) 777, 1201, 1602, 3179
BsaWI WCCGGW 4 cut(s) 83, 1523, 2751, 2923
Bsc4I CCNNNNNNNGG 5 cut(s) 937, 2002, 2324, 2870, 2923
Bse118I RCCGGY 2 cut(s) 400, 2751
Bse1I ACTGG 4 cut(s) 900, 1657, 2118, 2491
Bse21I CCTNAGG 1 cut(s) 888
Bse3DI GCAATG 1 cut(s) 656
Bse8I GATNNNNATC 2 cut(s) 1122, 1965
BseAI TCCGGA 2 cut(s) 1523, 2923
BseBI CCWGG 6 cut(s) 676, 938, 1185, 1743, 2817, 3180
BseDI CCNNGG 4 cut(s) 777, 1201, 1602, 3179
BseGI GGATG 3 cut(s) 1738, 2079, 2902
BseJI GATNNNNATC 2 cut(s) 1122, 1965
BseLI CCNNNNNNNGG 5 cut(s) 937, 2002, 2324, 2870, 2923
BseMI GCAATG 1 cut(s) 656
BseNI ACTGG 4 cut(s) 900, 1657, 2118, 2491
BseRI GAGGAG 1 cut(s) 537
BseSI GKGCMC 1 cut(s) 1681
BseYI CCCAGC 1 cut(s) 1503
BsgI GTGCAG 1 cut(s) 3123
Bsh1236I CGCG 1 cut(s) 2946
BshFI GGCC 8 cut(s) 71, 400, 479, 1200, 1656, 1679, 1760, 1860
BshTI ACCGGT 1 cut(s) 2751
BsiHKAI GWGCWC 2 cut(s) 54, 2972
BsiHKCI CYCGRG 1 cut(s) 313
BsiSI CCGG 6 cut(s) 84, 401, 1524, 2685, 2752, 2924
BslFI GGGAC 2 cut(s) 35, 815
BslI CCNNNNNNNGG 5 cut(s) 937, 2002, 2324, 2870, 2923
BsmAI GTCTC 3 cut(s) 710, 1009, 1379
BsmFI GGGAC 2 cut(s) 35, 815
BsmI GAATGC 2 cut(s) 253, 3171
BsnI GGCC 8 cut(s) 71, 400, 479, 1200, 1656, 1679, 1760, 1860
Bso31I GGTCTC 1 cut(s) 710
BsoBI CYCGRG 1 cut(s) 313
Bsp120I GGGCCC 1 cut(s) 1677
Bsp1286I GDGCHC 3 cut(s) 54, 1681, 2972
Bsp13I TCCGGA 2 cut(s) 1523, 2923
Bsp1407I TGTACA 5 cut(s) 304, 1813, 2178, 2495, 3079
Bsp68I TCGCGA 1 cut(s) 2946
BspANI GGCC 8 cut(s) 71, 400, 479, 1200, 1656, 1679, 1760, 1860
BspEI TCCGGA 2 cut(s) 1523, 2923
BspFNI CGCG 1 cut(s) 2946
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 755, 1679
BspMAI CTGCAG 4 cut(s) 216, 1147, 2847, 2995
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 7 cut(s) 94, 639, 877, 1534, 1924, 1940, 2058
BspQI GCTCTTC 1 cut(s) 2977
BspTI CTTAAG 3 cut(s) 1672, 2251, 2276
BspTNI GGTCTC 1 cut(s) 710
BsrBI CCGCTC 2 cut(s) 2871, 3101
BsrDI GCAATG 1 cut(s) 656
BsrFI RCCGGY 2 cut(s) 400, 2751
BsrGI TGTACA 5 cut(s) 304, 1813, 2178, 2495, 3079
BsrI ACTGG 4 cut(s) 900, 1657, 2118, 2491
BssAI RCCGGY 2 cut(s) 400, 2751
BssECI CCNNGG 4 cut(s) 777, 1201, 1602, 3179
BssNAI GTATAC 2 cut(s) 834, 2170
BssNI GRCGYC 2 cut(s) 42, 1225
BssT1I CCWWGG 2 cut(s) 1201, 1602
Bst1107I GTATAC 2 cut(s) 834, 2170
Bst2UI CCWGG 6 cut(s) 676, 938, 1185, 1743, 2817, 3180
Bst6I CTCTTC 4 cut(s) 90, 495, 1949, 2977
BstACI GRCGYC 2 cut(s) 42, 1225
BstAFI CTTAAG 3 cut(s) 1672, 2251, 2276
BstAPI GCANNNNNTGC 2 cut(s) 662, 1151
BstAUI TGTACA 5 cut(s) 304, 1813, 2178, 2495, 3079
BstBAI YACGTR 2 cut(s) 641, 2066
BstF5I GGATG 3 cut(s) 1738, 2079, 2902
BstFNI CGCG 1 cut(s) 2946
BstHHI GCGC 1 cut(s) 1123
BstMAI GTCTC 3 cut(s) 710, 1009, 1379
BstNI CCWGG 6 cut(s) 676, 938, 1185, 1743, 2817, 3180
BstNSI RCATGY 2 cut(s) 665, 2834
BstPAI GACNNNNGTC 1 cut(s) 779
BstSCI CCNGG 7 cut(s) 674, 936, 1183, 1741, 2684, 2815, 3178
BstSFI CTRYAG 5 cut(s) 212, 1143, 2084, 2843, 2991
BstSLI GKGCMC 1 cut(s) 1681
BstSNI TACGTA 1 cut(s) 2066
BstUI CGCG 1 cut(s) 2946
BstV2I GAAGAC 2 cut(s) 1703, 2316
BstX2I RGATCY 7 cut(s) 86, 631, 882, 1526, 1879, 1945, 3115
BstXI CCANNNNNNTGG 2 cut(s) 150, 2816
BstYI RGATCY 7 cut(s) 86, 631, 882, 1526, 1879, 1945, 3115
BstZ17I GTATAC 2 cut(s) 834, 2170
Bsu36I CCTNAGG 1 cut(s) 888
BsuI GTATCC 3 cut(s) 187, 1671, 2931
BsuRI GGCC 8 cut(s) 71, 400, 479, 1200, 1656, 1679, 1760, 1860
BtrI CACGTC 1 cut(s) 2464
BtsCI GGATG 3 cut(s) 1738, 2079, 2902
BtsI GCAGTG 1 cut(s) 251
BtuMI TCGCGA 1 cut(s) 2946
BveI ACCTGC 1 cut(s) 205
CaiI CAGNNNCTG 2 cut(s) 937, 2851
CciI TCATGA 1 cut(s) 589
CfoI GCGC 1 cut(s) 1123
Cfr10I RCCGGY 2 cut(s) 400, 2751
Cfr13I GGNCC 5 cut(s) 112, 376, 1677, 1678, 2216
CseI GACGC 1 cut(s) 1214
Csp6I GTAC 9 cut(s) 305, 876, 1814, 2067, 2179, 2360, 2440, 2496, 3080
CspAI ACCGGT 1 cut(s) 2751
CviQI GTAC 9 cut(s) 305, 876, 1814, 2067, 2179, 2360, 2440, 2496, 3080
DraI TTTAAA 1 cut(s) 580
DraIII CACNNNGTG 1 cut(s) 1500
EaeI YGGCCR 3 cut(s) 398, 477, 1654
Eam1104I CTCTTC 4 cut(s) 90, 495, 1949, 2977
EarI CTCTTC 4 cut(s) 90, 495, 1949, 2977
Ecl136II GAGCTC 1 cut(s) 2970
Eco105I TACGTA 1 cut(s) 2066
Eco130I CCWWGG 2 cut(s) 1201, 1602
Eco147I AGGCCT 1 cut(s) 1860
Eco24I GRGCYC 2 cut(s) 1681, 2972
Eco31I GGTCTC 1 cut(s) 710
Eco47I GGWCC 3 cut(s) 112, 376, 2216
Eco53kI GAGCTC 1 cut(s) 2970
Eco57I CTGAAG 4 cut(s) 1083, 1311, 2328, 2642
Eco81I CCTNAGG 1 cut(s) 888
Eco88I CYCGRG 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 2970
EcoO109I RGGNCCY 1 cut(s) 1677
EcoRI GAATTC 2 cut(s) 1721, 2039
EcoRII CCWGG 6 cut(s) 674, 936, 1183, 1741, 2815, 3178
EcoT14I CCWWGG 2 cut(s) 1201, 1602
EcoT22I ATGCAT 1 cut(s) 1731
EcoT38I GRGCYC 2 cut(s) 1681, 2972
ErhI CCWWGG 2 cut(s) 1201, 1602
FalI AAGNNNNNCTT 4 cut(s) 1284, 1316, 2804, 2836
FaqI GGGAC 2 cut(s) 35, 815
FauI CCCGC 2 cut(s) 117, 1374
FauNDI CATATG 1 cut(s) 2221
FblI GTMKAC 3 cut(s) 704, 833, 2169
FokI GGATG 3 cut(s) 1725, 2066, 2909
FriOI GRGCYC 2 cut(s) 1681, 2972
FspAI RTGCGCAY 1 cut(s) 1122
FspBI CTAG 9 cut(s) 221, 431, 450, 983, 1025, 2097, 2394, 2627, 3033
FspI TGCGCA 1 cut(s) 1122
GlaI GCGC 1 cut(s) 1122
GsaI CCCAGC 1 cut(s) 1507
GsuI CTGGAG 1 cut(s) 1955
HaeIII GGCC 8 cut(s) 71, 400, 479, 1200, 1656, 1679, 1760, 1860
HapII CCGG 6 cut(s) 84, 401, 1524, 2685, 2752, 2924
HgaI GACGC 1 cut(s) 1214
HhaI GCGC 1 cut(s) 1123
Hin1I GRCGYC 2 cut(s) 42, 1225
Hin6I GCGC 1 cut(s) 1121
HinP1I GCGC 1 cut(s) 1121
HincII GTYRAC 4 cut(s) 355, 1054, 1229, 2196
HindII GTYRAC 4 cut(s) 355, 1054, 1229, 2196
HindIII AAGCTT 1 cut(s) 415
HpaII CCGG 6 cut(s) 84, 401, 1524, 2685, 2752, 2924
HphI GGTGA 4 cut(s) 923, 1232, 1573, 2378
Hpy99I CGWCG 2 cut(s) 47, 2465
HpyAV CCTTC 5 cut(s) 82, 218, 1190, 1339, 2815
HpyCH4IV ACGT 7 cut(s) 42, 640, 2065, 2463, 2579, 2931, 3157
HpySE526I ACGT 7 cut(s) 42, 640, 2065, 2463, 2579, 2931, 3157
Hsp92I GRCGYC 2 cut(s) 42, 1225
HspAI GCGC 1 cut(s) 1121
Kpn2I TCCGGA 2 cut(s) 1523, 2923
KroI GCCGGC 1 cut(s) 400
KroNI GCCGGC 1 cut(s) 402
LguI GCTCTTC 1 cut(s) 2977
LmnI GCTCC 2 cut(s) 1108, 3196
LweI GCATC 7 cut(s) 46, 335, 1108, 1132, 2380, 2697, 2887
MaeI CTAG 9 cut(s) 221, 431, 450, 983, 1025, 2097, 2394, 2627, 3033
MaeII ACGT 7 cut(s) 42, 640, 2065, 2463, 2579, 2931, 3157
MaeIII GTNAC 6 cut(s) 79, 689, 1011, 2366, 3001, 3068
MbiI CCGCTC 2 cut(s) 2871, 3101
MflI RGATCY 7 cut(s) 86, 631, 882, 1526, 1879, 1945, 3115
MhlI GDGCHC 3 cut(s) 54, 1681, 2972
MlsI TGGCCA 2 cut(s) 479, 1656
MluNI TGGCCA 2 cut(s) 479, 1656
MlyI GAGTC 5 cut(s) 526, 710, 987, 3038, 3215
MmeI TCCRAC 2 cut(s) 1086, 1801
Mox20I TGGCCA 2 cut(s) 479, 1656
Mph1103I ATGCAT 1 cut(s) 1731
MroI TCCGGA 2 cut(s) 1523, 2923
MroNI GCCGGC 1 cut(s) 400
MroXI GAANNNNTTC 1 cut(s) 3169
MscI TGGCCA 2 cut(s) 479, 1656
MslI CAYNNNNRTG 1 cut(s) 1743
Msp20I TGGCCA 2 cut(s) 479, 1656
MspA1I CMGCKG 4 cut(s) 440, 853, 1222, 3137
MspCI CTTAAG 3 cut(s) 1672, 2251, 2276
MspI CCGG 6 cut(s) 84, 401, 1524, 2685, 2752, 2924
MspR9I CCNGG 7 cut(s) 676, 938, 1185, 1743, 2686, 2817, 3180
MssI GTTTAAAC 1 cut(s) 580
Mva1269I GAATGC 2 cut(s) 253, 3171
MvaI CCWGG 6 cut(s) 676, 938, 1185, 1743, 2817, 3180
MvnI CGCG 1 cut(s) 2946
NaeI GCCGGC 1 cut(s) 402
NciI CCSGG 1 cut(s) 2686
NdeI CATATG 1 cut(s) 2221
NgoMIV GCCGGC 1 cut(s) 400
NlaIV GGNNCC 2 cut(s) 755, 1679
NmuCI GTSAC 3 cut(s) 2366, 3001, 3068
NruI TCGCGA 1 cut(s) 2946
NsbI TGCGCA 1 cut(s) 1122
NsiI ATGCAT 1 cut(s) 1731
NspI RCATGY 2 cut(s) 665, 2834
PaeI GCATGC 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 313
PagI TCATGA 1 cut(s) 589
PceI AGGCCT 1 cut(s) 1860
PciI ACATGT 1 cut(s) 2830
PciSI GCTCTTC 1 cut(s) 2977
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 2 cut(s) 253, 3171
PdiI GCCGGC 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 3169
PfeI GAWTC 9 cut(s) 679, 986, 1668, 1913, 1940, 2354, 2399, 2636, 3202
PflMI CCANNNNNTGG 1 cut(s) 937
PfoI TCCNGGA 1 cut(s) 674
PinAI ACCGGT 1 cut(s) 2751
PleI GAGTC 5 cut(s) 526, 709, 986, 3037, 3215
PmeI GTTTAAAC 1 cut(s) 580
PpsI GAGTC 5 cut(s) 526, 709, 986, 3037, 3215
Ppu21I YACGTR 2 cut(s) 641, 2066
PscI ACATGT 1 cut(s) 2830
PshAI GACNNNNGTC 1 cut(s) 779
PshBI ATTAAT 2 cut(s) 1038, 1391
PsiI TTATAA 2 cut(s) 233, 2432
Psp124BI GAGCTC 1 cut(s) 2972
Psp1406I AACGTT 1 cut(s) 2931
Psp6I CCWGG 6 cut(s) 674, 936, 1183, 1741, 2815, 3178
PspFI CCCAGC 1 cut(s) 1503
PspGI CCWGG 6 cut(s) 674, 936, 1183, 1741, 2815, 3178
PspN4I GGNNCC 2 cut(s) 755, 1679
PspOMI GGGCCC 1 cut(s) 1677
PspPI GGNCC 5 cut(s) 112, 376, 1677, 1678, 2216
PstI CTGCAG 4 cut(s) 216, 1147, 2847, 2995
PstNI CAGNNNCTG 2 cut(s) 937, 2851
PsuI RGATCY 7 cut(s) 86, 631, 882, 1526, 1879, 1945, 3115
PvuII CAGCTG 3 cut(s) 440, 853, 3137
RruI TCGCGA 1 cut(s) 2946
RsaI GTAC 9 cut(s) 306, 877, 1815, 2068, 2180, 2361, 2441, 2497, 3081
RsaNI GTAC 9 cut(s) 305, 876, 1814, 2067, 2179, 2360, 2440, 2496, 3080
RseI CAYNNNNRTG 1 cut(s) 1743
SacI GAGCTC 1 cut(s) 2972
SapI GCTCTTC 1 cut(s) 2977
Sau96I GGNCC 5 cut(s) 112, 376, 1677, 1678, 2216
ScaI AGTACT 1 cut(s) 2361
SchI GAGTC 5 cut(s) 526, 710, 987, 3038, 3215
ScrFI CCNGG 7 cut(s) 676, 938, 1185, 1743, 2686, 2817, 3180
SduI GDGCHC 3 cut(s) 54, 1681, 2972
SfaNI GCATC 7 cut(s) 46, 335, 1108, 1132, 2380, 2697, 2887
SfcI CTRYAG 5 cut(s) 212, 1143, 2084, 2843, 2991
Sfr274I CTCGAG 1 cut(s) 313
SinI GGWCC 3 cut(s) 112, 376, 2216
SlaI CTCGAG 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 1743
SnaBI TACGTA 1 cut(s) 2066
SpeI ACTAGT 1 cut(s) 2096
SphI GCATGC 1 cut(s) 665
SseBI AGGCCT 1 cut(s) 1860
SspI AATATT 2 cut(s) 2674, 2784
SspMI CTAG 9 cut(s) 221, 431, 450, 983, 1025, 2097, 2394, 2627, 3033
SstI GAGCTC 1 cut(s) 2972
StuI AGGCCT 1 cut(s) 1860
StyD4I CCNGG 7 cut(s) 674, 936, 1183, 1741, 2684, 2815, 3178
StyI CCWWGG 2 cut(s) 1201, 1602
TaiI ACGT 7 cut(s) 45, 643, 2068, 2466, 2582, 2934, 3160
TaqI TCGA 4 cut(s) 54, 314, 976, 2772
TaqII GACCGA 2 cut(s) 791, 2813
TatI WGTACW 8 cut(s) 304, 875, 1813, 2178, 2359, 2439, 2495, 3079
TauI GCSGC 4 cut(s) 8, 71, 1225, 2344
TfiI GAWTC 9 cut(s) 679, 986, 1668, 1913, 1940, 2354, 2399, 2636, 3202
TseFI GTSAC 3 cut(s) 2366, 3001, 3068
Tsp45I GTSAC 3 cut(s) 2366, 3001, 3068
TspGWI ACGGA 1 cut(s) 2555
Van91I CCANNNNNTGG 1 cut(s) 937
Vha464I CTTAAG 3 cut(s) 1672, 2251, 2276
VpaK11BI GGWCC 3 cut(s) 112, 376, 2216
VspI ATTAAT 2 cut(s) 1038, 1391
XapI RAATTY 7 cut(s) 728, 1585, 1721, 1802, 2039, 2136, 2732
XbaI TCTAGA 3 cut(s) 220, 1024, 3032
XceI RCATGY 2 cut(s) 665, 2834
XhoI CTCGAG 1 cut(s) 313
XmiI GTMKAC 3 cut(s) 704, 833, 2169
XmnI GAANNNNTTC 1 cut(s) 3169
XspI CTAG 9 cut(s) 221, 431, 450, 983, 1025, 2097, 2394, 2627, 3033
ZraI GACGTC 1 cut(s) 43
ZrmI AGTACT 1 cut(s) 2361
Zsp2I ATGCAT 1 cut(s) 1731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.