AT3G03340

LUC7 N_terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007777
Physical Location & Seq
Forward (+)
786205 .. 790152
3948 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03340.1

Sequence Viewer

Length: 1209 bp
ATGGACGCTATAAGGAAGCAGCTTGATGTGCTCATGGGAGCTAACCGAAACGGCGACGTTCAGGAGGTGAATCGCAAATACTACGACCGTGATGTGTGTCGTCTTTACTTGTCTGGTCTCTGCCCTCACGATCTCTTCCAATTGACGAAAATGGATATGGGACCATGCCCAAAGGTGCACTCTTTGCAGCTTCGGAAAGAATACCGAGAAGCAAGGGCAAAAGGTGTTGATAACTACGACAGGGAATTGGAAGATGCCATAGACAGGCTTATCGTTGAGTGTGATAGGAAGATTGGTAGGGCCCTTAAGCGTCTTCAAGAAGAGGACGCCAAAGCTGCCATTGCCATTTCTGTCTCTGAAGTCACTCAGTCGCCTGAAATTCTCGAGTTATCGGAGAAAATCAAAGAGAAGATGAAGGAAGCAGATATCCACGATCTTGAAGGCAAAATGGATCTTAAGATTAGAGCTCTTGAGTTAGTCGAAGAGATGAGGACCAAGAGAGCTGACCAACAGGCGGTGTTGCTGTTGGAAGCCTTCAACAAAGATAGAGCATCCTTGCCACAGCCCGTTCCAGCTCAACCACCATCTTCCGAATTACCTCCACCGGATCCTCGCACTCAAGAAATGATAAATGAGAAACTGAAGAAGGCAGAAGATCTTGGTGAACAAGGAATGGTTGATGAAGCCCAGAAAGCCCTGGAAGAGGCTGAAGCTCTTAAGAAGCTTACAGTTAGACGAGAACCTCCAGCAGATTCAACGAAGTACACCGCTGTTGATGTGCGCATCACAGACCAAAAGTTGCGTCTATGTGACATATGTGGAGCATTCTTGAGCGTCTATGACAGTGATCGCCGTTTAGCTGATCATTTTGGGGGGAAGCTTCATCTAGGATACATGCTAGTCCGGGACAAATTAACAGAGCTTCTGGATGAGAAGGCCAATATACGCAAGGAAAGATCAAAGGAACGGAACAGTAAGGAGAGAGAATCAAGTAAAGACCGAGAGAAAGAACAAGAAACTAGTCGTGAACATCGAAGAGATTATGATCGCAGGAGTAGAGATCGAGATAGGCACCATGACCGTGATCGTGAACAAGACAGAGACTATGATCGGTCACACTCAAGAAGCAGACGTAGGTCACGCTCACGGTCCAGGTCAAGAGATAGACCAAGGGACTATGATCGCCACAGGCGTCACAACCGCTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

402

Amino Acids

47.35

Weight (kDa)

8.8

Isoelectric Point (pI)

63.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 171 4.4e-38 LUC7 N_terminus
LUC7 PF03194 206 - 325 8.6e-30 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 782
AccB1I GGYRCC 1 cut(s) 1071
AciI CCGC 3 cut(s) 515, 768, 1201
AclWI GGATC 3 cut(s) 459, 602, 615
AcsI RAATTY 1 cut(s) 378
AcuI CTGAAG 3 cut(s) 378, 662, 729
AcyI GRCGYC 2 cut(s) 327, 1192
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 3 cut(s) 264, 514, 703
AflII CTTAAG 3 cut(s) 305, 455, 716
AgsI TTSAA 4 cut(s) 317, 440, 538, 756
AhlI ACTAGT 1 cut(s) 1019
AjnI CCWGG 2 cut(s) 696, 1151
Alw21I GWGCWC 3 cut(s) 33, 180, 469
Alw26I GTCTC 3 cut(s) 122, 358, 1095
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 3 cut(s) 459, 602, 615
Ama87I CYCGRG 1 cut(s) 383
AoxI GGCC 2 cut(s) 300, 936
ApaI GGGCCC 1 cut(s) 304
ApaLI GTGCAC 1 cut(s) 176
ApeKI GCWGC 3 cut(s) 19, 187, 335
ApoI RAATTY 1 cut(s) 378
ArsI GACNNNNNNTTYG 2 cut(s) 787, 819
AspLEI GCGC 1 cut(s) 783
AspS9I GGNCC 5 cut(s) 161, 300, 301, 492, 1149
AsuC2I CCSGG 1 cut(s) 905
AsuHPI GGTGA 2 cut(s) 79, 674
AvaI CYCGRG 1 cut(s) 383
AvaII GGWCC 3 cut(s) 161, 492, 1149
BaeGI GKGCMC 2 cut(s) 180, 304
BamHI GGATCC 1 cut(s) 607
BanI GGYRCC 1 cut(s) 1071
BanII GRGCYC 2 cut(s) 304, 469
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 3 cut(s) 33, 180, 469
BbvI GCAGC 3 cut(s) 31, 199, 322
BccI CCATC 1 cut(s) 592
BceAI ACGGC 2 cut(s) 67, 837
BciT130I CCWGG 2 cut(s) 698, 1153
BciVI GTATCC 1 cut(s) 884
BclI TGATCA 1 cut(s) 862
BcnI CCSGG 1 cut(s) 905
BcoDI GTCTC 3 cut(s) 122, 358, 1095
BcuI ACTAGT 1 cut(s) 1019
BfaI CTAG 4 cut(s) 887, 899, 1020, 1207
BfrI CTTAAG 3 cut(s) 305, 455, 716
BfuI GTATCC 1 cut(s) 884
BglII AGATCT 1 cut(s) 655
BisI GCNGC 3 cut(s) 20, 188, 336
BlsI GCNGC 3 cut(s) 21, 189, 337
Bme1390I CCNGG 3 cut(s) 698, 905, 1153
Bme18I GGWCC 3 cut(s) 161, 492, 1149
BmeT110I CYCGRG 1 cut(s) 383
BmgT120I GGNCC 5 cut(s) 161, 300, 301, 492, 1149
BmiI GGNNCC 4 cut(s) 162, 302, 609, 1073
BmrFI CCNGG 3 cut(s) 698, 905, 1153
BmsI GCATC 3 cut(s) 244, 560, 792
BoxI GACNNNNGTC 1 cut(s) 1135
BpiI GAAGAC 1 cut(s) 305
BpmI CTGGAG 1 cut(s) 729
BpuEI CTTGAG 4 cut(s) 491, 603, 850, 1105
BpuMI CCSGG 1 cut(s) 905
BsaBI GATNNNNATC 1 cut(s) 1044
BsaHI GRCGYC 2 cut(s) 327, 1192
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 696, 1169
BsaWI WCCGGW 1 cut(s) 604
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 514, 703
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 1044
BseBI CCWGG 2 cut(s) 698, 1153
BseDI CCNNGG 2 cut(s) 696, 1169
BseGI GGATG 2 cut(s) 551, 934
BseJI GATNNNNATC 1 cut(s) 1044
BseLI CCNNNNNNNGG 3 cut(s) 264, 514, 703
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 1 cut(s) 380
BseSI GKGCMC 2 cut(s) 180, 304
BseXI GCAGC 3 cut(s) 31, 199, 322
Bsh1285I CGRYCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 302, 938
BshNI GGYRCC 1 cut(s) 1071
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 3 cut(s) 33, 180, 469
BsiHKCI CYCGRG 1 cut(s) 383
BsiSI CCGG 2 cut(s) 605, 904
BslFI GGGAC 3 cut(s) 174, 920, 1187
BslI CCNNNNNNNGG 3 cut(s) 264, 514, 703
BsmAI GTCTC 3 cut(s) 122, 358, 1095
BsmFI GGGAC 3 cut(s) 174, 920, 1187
BsmI GAATGC 1 cut(s) 824
BsnI GGCC 2 cut(s) 302, 938
Bso31I GGTCTC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 383
Bsp120I GGGCCC 1 cut(s) 300
Bsp1286I GDGCHC 4 cut(s) 33, 180, 304, 469
BspACI CCGC 3 cut(s) 515, 768, 1201
BspANI GGCC 2 cut(s) 302, 938
BspCNI CTCAG 1 cut(s) 379
BspLI GGNNCC 4 cut(s) 162, 302, 609, 1073
BspPI GGATC 3 cut(s) 459, 602, 615
BspT107I GGYRCC 1 cut(s) 1071
BspTI CTTAAG 3 cut(s) 305, 455, 716
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 2 cut(s) 696, 1169
BssNI GRCGYC 2 cut(s) 327, 1192
BssT1I CCWWGG 1 cut(s) 1169
Bst2UI CCWGG 2 cut(s) 698, 1153
Bst4CI ACNGT 6 cut(s) 89, 730, 845, 974, 1082, 1149
Bst6I CTCTTC 5 cut(s) 140, 315, 477, 696, 1030
BstACI GRCGYC 2 cut(s) 327, 1192
BstAFI CTTAAG 3 cut(s) 305, 455, 716
BstAPI GCANNNNNTGC 1 cut(s) 184
BstDEI CTNAG 1 cut(s) 366
BstENI CCTNNNNNAGG 1 cut(s) 701
BstF5I GGATG 2 cut(s) 551, 934
BstHHI GCGC 1 cut(s) 783
BstMAI GTCTC 3 cut(s) 122, 358, 1095
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 5 cut(s) 28, 184, 335, 341, 692
BstNI CCWGG 2 cut(s) 698, 1153
BstNSI RCATGY 1 cut(s) 898
BstPAI GACNNNNGTC 1 cut(s) 1135
BstSCI CCNGG 3 cut(s) 696, 903, 1151
BstSLI GKGCMC 2 cut(s) 180, 304
BstV1I GCAGC 3 cut(s) 31, 199, 322
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 3 cut(s) 451, 607, 655
BstYI RGATCY 3 cut(s) 451, 607, 655
BsuI GTATCC 1 cut(s) 884
BsuRI GGCC 2 cut(s) 302, 938
BtsCI GGATG 2 cut(s) 551, 934
BtsIMutI CAGTG 1 cut(s) 850
CfoI GCGC 1 cut(s) 783
Cfr13I GGNCC 5 cut(s) 161, 300, 301, 492, 1149
CseI GACGC 6 cut(s) 14, 299, 335, 791, 823, 1181
Csp6I GTAC 1 cut(s) 763
CviAII CATG 4 cut(s) 34, 165, 895, 1076
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 1 cut(s) 366
Eam1104I CTCTTC 5 cut(s) 140, 315, 477, 696, 1030
EarI CTCTTC 5 cut(s) 140, 315, 477, 696, 1030
Ecl136II GAGCTC 1 cut(s) 467
Eco130I CCWWGG 1 cut(s) 1169
Eco24I GRGCYC 2 cut(s) 304, 469
Eco31I GGTCTC 1 cut(s) 122
Eco32I GATATC 1 cut(s) 427
Eco47I GGWCC 3 cut(s) 161, 492, 1149
Eco53kI GAGCTC 1 cut(s) 467
Eco57I CTGAAG 3 cut(s) 378, 662, 729
Eco88I CYCGRG 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 467
EcoNI CCTNNNNNAGG 1 cut(s) 701
EcoO109I RGGNCCY 2 cut(s) 300, 301
EcoRII CCWGG 2 cut(s) 696, 1151
EcoRV GATATC 1 cut(s) 427
EcoT14I CCWWGG 1 cut(s) 1169
EcoT38I GRGCYC 2 cut(s) 304, 469
ErhI CCWWGG 1 cut(s) 1169
FaeI CATG 4 cut(s) 37, 168, 898, 1079
FaqI GGGAC 3 cut(s) 174, 920, 1187
FatI CATG 4 cut(s) 33, 164, 894, 1075
FauNDI CATATG 1 cut(s) 815
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 3 cut(s) 20, 188, 336
FokI GGATG 2 cut(s) 538, 941
FriOI GRGCYC 2 cut(s) 304, 469
Fsp4HI GCNGC 3 cut(s) 20, 188, 336
FspAI RTGCGCAY 1 cut(s) 782
FspBI CTAG 4 cut(s) 887, 899, 1020, 1207
FspI TGCGCA 1 cut(s) 782
GlaI GCGC 1 cut(s) 782
GluI GCNGC 3 cut(s) 20, 188, 336
GsuI CTGGAG 1 cut(s) 729
HaeIII GGCC 2 cut(s) 302, 938
HapII CCGG 2 cut(s) 605, 904
HgaI GACGC 6 cut(s) 14, 299, 335, 791, 823, 1181
HhaI GCGC 1 cut(s) 783
Hin1I GRCGYC 2 cut(s) 327, 1192
Hin1II CATG 4 cut(s) 37, 168, 898, 1079
Hin6I GCGC 1 cut(s) 781
HinP1I GCGC 1 cut(s) 781
HindIII AAGCTT 2 cut(s) 722, 878
HinfI GANTC 3 cut(s) 70, 752, 986
HpaII CCGG 2 cut(s) 605, 904
HphI GGTGA 2 cut(s) 79, 674
Hpy166II GTNNAC 5 cut(s) 178, 665, 765, 1028, 1091
Hpy188I TCNGA 4 cut(s) 195, 358, 394, 592
Hpy8I GTNNAC 5 cut(s) 178, 665, 765, 1028, 1091
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 5 cut(s) 409, 434, 544, 640, 928
HpyCH4III ACNGT 6 cut(s) 89, 730, 845, 974, 1082, 1149
HpyCH4IV ACGT 2 cut(s) 57, 1132
HpyCH4V TGCA 2 cut(s) 178, 187
HpyF10VI GCNNNNNNNGC 5 cut(s) 28, 184, 335, 341, 692
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 2 cut(s) 57, 1132
Hsp92I GRCGYC 2 cut(s) 327, 1192
Hsp92II CATG 4 cut(s) 37, 168, 898, 1079
HspAI GCGC 1 cut(s) 781
Ksp22I TGATCA 1 cut(s) 862
LmnI GCTCC 2 cut(s) 38, 821
Lsp1109I GCAGC 3 cut(s) 31, 199, 322
LweI GCATC 3 cut(s) 244, 560, 792
MaeI CTAG 4 cut(s) 887, 899, 1020, 1207
MaeII ACGT 2 cut(s) 57, 1132
MaeIII GTNAC 5 cut(s) 361, 809, 1113, 1137, 1193
MfeI CAATTG 1 cut(s) 140
MflI RGATCY 3 cut(s) 451, 607, 655
MhlI GDGCHC 4 cut(s) 33, 180, 304, 469
MluCI AATT 5 cut(s) 140, 245, 378, 593, 911
MmeI TCCRAC 1 cut(s) 507
MnlI CCTC 8 cut(s) 58, 135, 316, 483, 609, 621, 697, 753
MseI TTAA 4 cut(s) 306, 456, 717, 914
MslI CAYNNNNRTG 1 cut(s) 1080
MspA1I CMGCKG 1 cut(s) 770
MspCI CTTAAG 3 cut(s) 305, 455, 716
MspI CCGG 2 cut(s) 605, 904
MspR9I CCNGG 3 cut(s) 698, 905, 1153
MunI CAATTG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 824
MvaI CCWGG 2 cut(s) 698, 1153
MwoI GCNNNNNNNGC 5 cut(s) 28, 184, 335, 341, 692
NciI CCSGG 1 cut(s) 905
NdeI CATATG 1 cut(s) 815
NlaIII CATG 4 cut(s) 37, 168, 898, 1079
NlaIV GGNNCC 4 cut(s) 162, 302, 609, 1073
NmuCI GTSAC 5 cut(s) 361, 809, 1113, 1137, 1193
NsbI TGCGCA 1 cut(s) 782
NspI RCATGY 1 cut(s) 898
PaeR7I CTCGAG 1 cut(s) 383
PcsI WCGNNNNNNNCGW 2 cut(s) 1030, 1189
PctI GAATGC 1 cut(s) 824
PfeI GAWTC 3 cut(s) 70, 752, 986
PfoI TCCNGGA 1 cut(s) 903
PkrI GCNGC 3 cut(s) 21, 189, 337
PshAI GACNNNNGTC 1 cut(s) 1135
Psp124BI GAGCTC 1 cut(s) 469
Psp6I CCWGG 2 cut(s) 696, 1151
PspGI CCWGG 2 cut(s) 696, 1151
PspN4I GGNNCC 4 cut(s) 162, 302, 609, 1073
PspOMI GGGCCC 1 cut(s) 300
PspPI GGNCC 5 cut(s) 161, 300, 301, 492, 1149
PsuI RGATCY 3 cut(s) 451, 607, 655
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 1 cut(s) 1080
SacI GAGCTC 1 cut(s) 469
SaqAI TTAA 4 cut(s) 306, 456, 717, 914
SatI GCNGC 3 cut(s) 20, 188, 336
Sau96I GGNCC 5 cut(s) 161, 300, 301, 492, 1149
ScrFI CCNGG 3 cut(s) 698, 905, 1153
SduI GDGCHC 4 cut(s) 33, 180, 304, 469
SfaNI GCATC 3 cut(s) 244, 560, 792
Sfr274I CTCGAG 1 cut(s) 383
SinI GGWCC 3 cut(s) 161, 492, 1149
SlaI CTCGAG 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 1080
SmlI CTYRAG 8 cut(s) 305, 383, 455, 470, 618, 716, 829, 1120
SmoI CTYRAG 8 cut(s) 305, 383, 455, 470, 618, 716, 829, 1120
SpeI ACTAGT 1 cut(s) 1019
Sse9I AATT 5 cut(s) 140, 245, 378, 593, 911
SsiI CCGC 3 cut(s) 515, 768, 1201
SspMI CTAG 4 cut(s) 887, 899, 1020, 1207
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 3 cut(s) 696, 903, 1151
StyI CCWWGG 1 cut(s) 1169
TaaI ACNGT 6 cut(s) 89, 730, 845, 974, 1082, 1149
TaiI ACGT 2 cut(s) 60, 1135
TaqI TCGA 4 cut(s) 384, 480, 1033, 1063
TaqII GACCGA 2 cut(s) 1014, 1101
TasI AATT 5 cut(s) 140, 245, 378, 593, 911
TatI WGTACW 1 cut(s) 762
TfiI GAWTC 3 cut(s) 70, 752, 986
Tru1I TTAA 4 cut(s) 306, 456, 717, 914
Tru9I TTAA 4 cut(s) 306, 456, 717, 914
TscAI CASTG 1 cut(s) 850
TseFI GTSAC 5 cut(s) 361, 809, 1113, 1137, 1193
TseI GCWGC 3 cut(s) 19, 187, 335
Tsp45I GTSAC 5 cut(s) 361, 809, 1113, 1137, 1193
TspDTI ATGAA 3 cut(s) 428, 696, 872
TspGWI ACGGA 1 cut(s) 982
TspRI CASTG 1 cut(s) 850
Vha464I CTTAAG 3 cut(s) 305, 455, 716
VneI GTGCAC 1 cut(s) 176
VpaK11BI GGWCC 3 cut(s) 161, 492, 1149
XagI CCTNNNNNAGG 1 cut(s) 701
XapI RAATTY 1 cut(s) 378
XceI RCATGY 1 cut(s) 898
XhoI CTCGAG 1 cut(s) 383
XspI CTAG 4 cut(s) 887, 899, 1020, 1207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.