Rh3DG003600

RNA-binding protein Luc7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0007777
Physical Location & Seq
Forward (+)
292798 .. 298882
6085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG003600.1

Sequence Viewer

Length: 942 bp
ATGGACGCGCTGAGGAAGCAGCTGGACCAGCTCATGGGAGCCAATCGGAACGGCGACGTCCGGGAGGTCAATCGCAAATATTACGATCGCGATGTGTGTCGCCTCTACTTGGTCGGACTCTGCCCCCACGAGCTCTTCCAATTAACGAAAATGGATATGGGACCCTGCCCGAAGGTTCACTCTCTGCAGCTCAGAGAAGAATACAAAGAAGCGAGAAAACAAGGGACTGATAACTATGACAGAGACCTGGAGGATGTCATAGAGAGGCTCATTGTTGAATGTGATCGAAAAATTTCTAGAGCCCTTAAGCGCCTCGAGGATGATGATGCAAAAGCTGCTATTGCAATTTCTGTCTCTGAGGTTACTCAGACACCGGAGATACTTGAGTTGTCAAAGCAGATCAAAGAGAAGCTTGAAGAAGCTGATAGATTCGATCTTGAAGGCAAGACAGATCTTAAGATTCGGGCTCTGGAGATATTAGAAGAACTCAGAGGCAAGAGGGCAGACAAACAGTCAATGCTTCTTTTGGATGCTTTCAATAAGGATAGAGCAGCTTTACCTCAACCACTGCCAAACCCACCACCTTTGGCACCGTTGCCTGTAGTTGTTCCCGACGCTCGAACACAGGAAATGATAAATGAAAAGTTGAAGAAGGCAGAGGACCTTGGTGAGCAAGGAATGGTTGATGAGGCGCAAAAAGCATTGGAAGAGGCTGAAGCACTGAAAAAGTTGCCAGCCCGGCAGGAGCCTGTCCTGGATTCCTCTAAGTACACTGCTGCAGATGTGCGCATTACTGATCAAAAGCTGCGTGTTTGTGACATCTGTGGAGCATTTCTGAGTGTTTATGACAGTGATCGTCGTTTAGCTGATCATTTTGGTGGGAAACTTCATTTAGGCTATATGCAAATCCGTGAGAAGTTAGCAGAGCTGCAGGTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

313

Amino Acids

35.72

Weight (kDa)

5.35

Isoelectric Point (pI)

45.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 171 1.8e-39 LUC7 N_terminus
LUC7 PF03194 208 - 311 2.4e-29 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AbsI CCTCGAGG 1 cut(s) 314
Acc16I TGCGCA 1 cut(s) 788
Acc36I ACCTGC 1 cut(s) 922
AccB1I GGYRCC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 2 cut(s) 8, 90
AcsI RAATTY 1 cut(s) 291
AcuI CTGAAG 1 cut(s) 735
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 1 cut(s) 770
AfiI CCNNNNNNNGG 2 cut(s) 34, 109
AflII CTTAAG 2 cut(s) 305, 455
AgsI TTSAA 5 cut(s) 278, 416, 440, 538, 649
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 2 cut(s) 246, 753
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 237, 358
Ama87I CYCGRG 1 cut(s) 314
ApeKI GCWGC 7 cut(s) 19, 187, 335, 551, 776, 805, 928
ApoI RAATTY 1 cut(s) 291
Asp700I GAANNNNTTC 1 cut(s) 292
AspLEI GCGC 4 cut(s) 10, 312, 694, 789
AspS9I GGNCC 3 cut(s) 25, 161, 661
AsuC2I CCSGG 2 cut(s) 62, 739
AsuHPI GGTGA 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 3 cut(s) 25, 161, 661
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 3 cut(s) 135, 304, 469
BauI CACGAG 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 135
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 7 cut(s) 31, 199, 322, 563, 763, 792, 915
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 2 cut(s) 248, 755
BclI TGATCA 2 cut(s) 796, 868
BcnI CCSGG 2 cut(s) 62, 739
BcoDI GTCTC 2 cut(s) 237, 358
BfaI CTAG 1 cut(s) 297
BfmI CTRYAG 4 cut(s) 185, 600, 777, 929
BfoI RGCGCY 1 cut(s) 313
BfrI CTTAAG 2 cut(s) 305, 455
BfuAI ACCTGC 1 cut(s) 922
BglI GCCNNNNNGGC 1 cut(s) 739
BglII AGATCT 1 cut(s) 451
BisI GCNGC 7 cut(s) 20, 188, 336, 552, 777, 806, 929
BlsI GCNGC 7 cut(s) 21, 189, 337, 553, 778, 807, 930
Bme1390I CCNGG 4 cut(s) 62, 248, 739, 755
Bme18I GGWCC 3 cut(s) 25, 161, 661
BmeRI GACNNNNNGTC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 25, 161, 661
BmiI GGNNCC 5 cut(s) 40, 162, 163, 591, 747
BmrFI CCNGG 4 cut(s) 62, 248, 739, 755
BmsI GCATC 2 cut(s) 316, 520
BpmI CTGGAG 2 cut(s) 269, 491
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 62, 739
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 664
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 109
BseBI CCWGG 2 cut(s) 248, 755
BseDI CCNNGG 1 cut(s) 664
BseGI GGATG 3 cut(s) 259, 325, 535
BseLI CCNNNNNNNGG 2 cut(s) 34, 109
BseMII CTCAG 5 cut(s) 205, 348, 380, 502, 827
BseXI GCAGC 7 cut(s) 31, 199, 322, 563, 763, 792, 915
Bsh1236I CGCG 2 cut(s) 8, 90
Bsh1285I CGRYCG 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 589
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 3 cut(s) 61, 374, 739
BslFI GGGAC 2 cut(s) 174, 238
BslI CCNNNNNNNGG 2 cut(s) 34, 109
BsmAI GTCTC 2 cut(s) 237, 358
BsmFI GGGAC 2 cut(s) 174, 238
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 3 cut(s) 135, 304, 469
Bsp143I GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
Bsp68I TCGCGA 1 cut(s) 90
BspCNI CTCAG 5 cut(s) 204, 349, 379, 501, 828
BspFNI CGCG 2 cut(s) 8, 90
BspLI GGNNCC 5 cut(s) 40, 162, 163, 591, 747
BspMAI CTGCAG 3 cut(s) 189, 781, 933
BspMI ACCTGC 1 cut(s) 922
BspQI GCTCTTC 1 cut(s) 140
BspT107I GGYRCC 1 cut(s) 589
BspTI CTTAAG 2 cut(s) 305, 455
BspTNI GGTCTC 1 cut(s) 237
BssECI CCNNGG 1 cut(s) 664
BssMI GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 664
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 248, 755
Bst4CI ACNGT 3 cut(s) 513, 594, 851
Bst6I CTCTTC 2 cut(s) 140, 702
BstACI GRCGYC 1 cut(s) 57
BstAFI CTTAAG 2 cut(s) 305, 455
BstAPI GCANNNNNTGC 1 cut(s) 335
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 7 cut(s) 11, 191, 357, 366, 488, 765, 836
BstF5I GGATG 3 cut(s) 259, 325, 535
BstFNI CGCG 2 cut(s) 8, 90
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 4 cut(s) 10, 312, 694, 789
BstKTI GATC 8 cut(s) 88, 286, 402, 436, 454, 799, 856, 871
BstMAI GTCTC 2 cut(s) 237, 358
BstMBI GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 6 cut(s) 16, 28, 335, 341, 698, 739
BstNI CCWGG 2 cut(s) 248, 755
BstSCI CCNGG 4 cut(s) 60, 246, 737, 753
BstSFI CTRYAG 4 cut(s) 185, 600, 777, 929
BstUI CGCG 2 cut(s) 8, 90
BstV1I GCAGC 7 cut(s) 31, 199, 322, 563, 763, 792, 915
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 259, 325, 535
BtsI GCAGTG 2 cut(s) 566, 771
BtsIMutI CAGTG 4 cut(s) 566, 719, 771, 856
BtuMI TCGCGA 1 cut(s) 90
BveI ACCTGC 1 cut(s) 922
Cac8I GCNNGC 1 cut(s) 735
CfoI GCGC 4 cut(s) 10, 312, 694, 789
Cfr13I GGNCC 3 cut(s) 25, 161, 661
CseI GACGC 2 cut(s) 14, 623
Csp6I GTAC 1 cut(s) 769
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 1 cut(s) 34
CviQI GTAC 1 cut(s) 769
DdeI CTNAG 7 cut(s) 11, 191, 357, 366, 488, 765, 836
DpnI GATC 8 cut(s) 87, 285, 401, 435, 453, 798, 855, 870
DpnII GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
DriI GACNNNNNGTC 1 cut(s) 511
Eam1104I CTCTTC 2 cut(s) 140, 702
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 2 cut(s) 140, 702
Ecl136II GAGCTC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 664
Eco24I GRGCYC 3 cut(s) 135, 304, 469
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 25, 161, 661
Eco53kI GAGCTC 1 cut(s) 133
Eco57I CTGAAG 1 cut(s) 735
Eco88I CYCGRG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 133
EcoO109I RGGNCCY 2 cut(s) 161, 661
EcoRII CCWGG 2 cut(s) 246, 753
EcoT14I CCWWGG 1 cut(s) 664
EcoT38I GRGCYC 3 cut(s) 135, 304, 469
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 1 cut(s) 37
FaiI YATR 8 cut(s) 35, 158, 237, 260, 846, 900, 902, 937
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 2 cut(s) 174, 238
FatI CATG 1 cut(s) 33
FbaI TGATCA 2 cut(s) 796, 868
Fnu4HI GCNGC 7 cut(s) 20, 188, 336, 552, 777, 806, 929
FokI GGATG 3 cut(s) 266, 332, 542
FriOI GRGCYC 3 cut(s) 135, 304, 469
Fsp4HI GCNGC 7 cut(s) 20, 188, 336, 552, 777, 806, 929
FspAI RTGCGCAY 1 cut(s) 788
FspBI CTAG 1 cut(s) 297
FspI TGCGCA 1 cut(s) 788
GlaI GCGC 4 cut(s) 9, 311, 693, 788
GluI GCNGC 7 cut(s) 20, 188, 336, 552, 777, 806, 929
GsuI CTGGAG 2 cut(s) 269, 491
HaeII RGCGCY 1 cut(s) 313
HapII CCGG 3 cut(s) 61, 374, 739
HgaI GACGC 2 cut(s) 14, 623
HhaI GCGC 4 cut(s) 10, 312, 694, 789
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 4 cut(s) 8, 310, 692, 787
HinP1I GCGC 4 cut(s) 8, 310, 692, 787
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 4 cut(s) 117, 429, 460, 758
HpaII CCGG 3 cut(s) 61, 374, 739
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 2 cut(s) 178, 771
Hpy188I TCNGA 7 cut(s) 48, 116, 194, 358, 369, 491, 837
Hpy188III TCNNGA 5 cut(s) 89, 297, 437, 470, 611
Hpy8I GTNNAC 2 cut(s) 178, 771
Hpy99I CGWCG 3 cut(s) 59, 617, 861
HpyAV CCTTC 3 cut(s) 166, 434, 646
HpyCH4III ACNGT 3 cut(s) 513, 594, 851
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 6 cut(s) 187, 329, 344, 779, 904, 931
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 28, 335, 341, 698, 739
HpyF3I CTNAG 7 cut(s) 11, 191, 357, 366, 488, 765, 836
HpySE526I ACGT 1 cut(s) 57
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 4 cut(s) 8, 310, 692, 787
KflI GGGWCCC 1 cut(s) 161
Ksp22I TGATCA 2 cut(s) 796, 868
Kzo9I GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
LguI GCTCTTC 1 cut(s) 140
LmnI GCTCC 3 cut(s) 38, 745, 827
Lsp1109I GCAGC 7 cut(s) 31, 199, 322, 563, 763, 792, 915
LweI GCATC 2 cut(s) 316, 520
MaeI CTAG 1 cut(s) 297
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 2 cut(s) 361, 815
MalI GATC 8 cut(s) 87, 285, 401, 435, 453, 798, 855, 870
MboI GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
MboII GAAGA 6 cut(s) 127, 209, 428, 494, 661, 719
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 3 cut(s) 135, 304, 469
MluCI AATT 3 cut(s) 140, 291, 345
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 94
MroXI GAANNNNTTC 1 cut(s) 292
MseI TTAA 3 cut(s) 143, 306, 456
MslI CAYNNNNRTG 1 cut(s) 876
MspA1I CMGCKG 1 cut(s) 22
MspCI CTTAAG 2 cut(s) 305, 455
MspI CCGG 3 cut(s) 61, 374, 739
MspR9I CCNGG 4 cut(s) 62, 248, 739, 755
MvaI CCWGG 2 cut(s) 248, 755
MvnI CGCG 2 cut(s) 8, 90
MwoI GCNNNNNNNGC 6 cut(s) 16, 28, 335, 341, 698, 739
NciI CCSGG 2 cut(s) 62, 739
NdeII GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 5 cut(s) 40, 162, 163, 591, 747
NmuCI GTSAC 1 cut(s) 815
NruI TCGCGA 1 cut(s) 90
NsbI TGCGCA 1 cut(s) 788
PaeR7I CTCGAG 1 cut(s) 314
PciSI GCTCTTC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 292
PfeI GAWTC 3 cut(s) 429, 460, 758
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 2 cut(s) 60, 753
PkrI GCNGC 7 cut(s) 21, 189, 337, 553, 778, 807, 930
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PpuMI RGGWCCY 2 cut(s) 161, 661
Psp124BI GAGCTC 1 cut(s) 135
Psp5II RGGWCCY 2 cut(s) 161, 661
Psp6I CCWGG 2 cut(s) 246, 753
PspGI CCWGG 2 cut(s) 246, 753
PspN4I GGNNCC 5 cut(s) 40, 162, 163, 591, 747
PspPI GGNCC 3 cut(s) 25, 161, 661
PspPPI RGGWCCY 2 cut(s) 161, 661
PspXI VCTCGAGB 1 cut(s) 314
PstI CTGCAG 3 cut(s) 189, 781, 933
PsuI RGATCY 1 cut(s) 451
PvuI CGATCG 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 22
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 1 cut(s) 770
RsaNI GTAC 1 cut(s) 769
RseI CAYNNNNRTG 1 cut(s) 876
SacI GAGCTC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 140
SaqAI TTAA 3 cut(s) 143, 306, 456
SatI GCNGC 7 cut(s) 20, 188, 336, 552, 777, 806, 929
Sau3AI GATC 8 cut(s) 85, 283, 399, 433, 451, 796, 853, 868
Sau96I GGNCC 3 cut(s) 25, 161, 661
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 4 cut(s) 62, 248, 739, 755
SduI GDGCHC 3 cut(s) 135, 304, 469
SfaNI GCATC 2 cut(s) 316, 520
SfcI CTRYAG 4 cut(s) 185, 600, 777, 929
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 3 cut(s) 25, 161, 661
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 876
SmlI CTYRAG 4 cut(s) 305, 314, 383, 455
SmoI CTYRAG 4 cut(s) 305, 314, 383, 455
Sse9I AATT 3 cut(s) 140, 291, 345
SspI AATATT 1 cut(s) 80
SspMI CTAG 1 cut(s) 297
SstI GAGCTC 1 cut(s) 135
StyD4I CCNGG 4 cut(s) 60, 246, 737, 753
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 3 cut(s) 513, 594, 851
TaiI ACGT 1 cut(s) 60
TaqI TCGA 4 cut(s) 286, 315, 432, 619
TasI AATT 3 cut(s) 140, 291, 345
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 3 cut(s) 429, 460, 758
Tru1I TTAA 3 cut(s) 143, 306, 456
Tru9I TTAA 3 cut(s) 143, 306, 456
TscAI CASTG 4 cut(s) 573, 726, 778, 856
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 7 cut(s) 19, 187, 335, 551, 776, 805, 928
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 2 cut(s) 654, 878
TspGWI ACGGA 1 cut(s) 899
TspRI CASTG 4 cut(s) 573, 726, 778, 856
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 2 cut(s) 305, 455
VpaK11BI GGWCC 3 cut(s) 25, 161, 661
XapI RAATTY 1 cut(s) 291
XbaI TCTAGA 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 314
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 1 cut(s) 297
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.