MD12G1263400.v1.1

RNA-binding protein Luc7-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
32974321 .. 32981117
6797 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1263400.v1.1.491

Sequence Viewer

Length: 1245 bp
ATGGACGCGCTGAGGAAGCAGCTCGACCAGCTCATGGGGGCCAACCGAAACGGCGACGTTCGGGAGGTCAACCGCAAGTATTACGATCGCGATGTGTGTCGCCTCTACTTGGTCGGCCTCTGCCCCCACGAGCTTTTTCAGTTAACGAAAATGGATATGGGTCCGTGCCCTAATGTCCACTCTTTGCAACTCAGAAAAGAATACGAGGAAGCGAAAGCGAAAGGGACTGATAACTATGACAGAGACCTGGAGGATGTCATAGATAGGCTCATTGTTGAGTGTGATAGGAAAATTACTAGAGCTCTTAAGCGCCTCGAGGATGATGATGCCAAGGCTGCTATTGCCATCTCTGTCTCTGAAGTTACTCAGACACCAGAGATACTTGAGTTGTCAAAGCAGATCAAGGAGAAGTTGAAAGAAGTTGATCAATATGATCTTGAAGGCAAGACAGATCTTAAGATTCGGGCTTTGGAGATAGTAGAAGAACTCAGAGGCATTAGAGCAGATAAACAGTCCACGTTACTTTTGGATGCTTTCAATAAGGACCGGGCAGCTTTACCTCAACCCCTGCCAAACCCACCTCCTTTGGCACCCTTGCCTGTAGTTGTTCCTGATGCAAGAACACAGGAAATGATAAATGAAAAGTTGAAGAAGGCAGAGGACCTTGGTGAGCAAGGTATGGTTGATGAAGCACAAAAGGCATTGGAAGAGGCTGAAGCGCTGAAGAAGCTGCCTGCCAGACAAGAGCCTATCGTGGATTCCTCCAAGTACACTGCTGCTGATGTTCGTATTACTGATCAAAAGCTACGCGTTTGTGACATCTGTGGAGCATTTTTGAGTGTTTATGACAGTGACCGTCGTTTAGCTGATCACTTTGGCGGGAAGCTTCATTTAGGCTATATACAAATCCGTGAGAAGTTAGCAGAGCTGCAGGAAGAGAAAAACAAGAGTCGTAAGGTTGATAGGTCTGATGATAGGAGATCAAAGGAGCGAAGTAAGGAATGTGACAGGGAATCAAGTAGGGATAGAGAACGTGGAGCTAGCCGGGACCGAGGTAGGGATTATGATCGTAGGAGCAGAGATCGCGATAGGTACTATGATCGAGATCGTGGATATGATCGCGATCGTGATAGAGATTCAGATCGCTCCCACAATTATGATTCAAGAAGTCGCCGTAGGTCACGCTCACGATCGAGGGAACGTTCCAGGGATTATGATCGCCACAGGCGTTATGACCGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

415

Amino Acids

48.59

Weight (kDa)

8.48

Isoelectric Point (pI)

57.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 169 6.1e-39 LUC7 N_terminus
LUC7 PF03194 208 - 325 2.1e-31 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 5 cut(s) 8, 90, 810, 1086, 1122
AciI CCGC 2 cut(s) 73, 879
AclI AACGTT 1 cut(s) 1201
AcuI CTGAAG 3 cut(s) 378, 735, 743
AfaI GTAC 3 cut(s) 770, 1094, 1241
AfeI AGCGCT 1 cut(s) 720
AfiI CCNNNNNNNGG 3 cut(s) 34, 109, 1057
AflII CTTAAG 2 cut(s) 305, 455
AflIII ACRYGT 1 cut(s) 808
AgeI ACCGGT 1 cut(s) 1236
AgsI TTSAA 5 cut(s) 415, 440, 538, 649, 1164
AjnI CCWGG 2 cut(s) 246, 1205
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 2 cut(s) 237, 358
Ama87I CYCGRG 1 cut(s) 314
Aor51HI AGCGCT 1 cut(s) 720
AoxI GGCC 2 cut(s) 39, 115
ApeKI GCWGC 6 cut(s) 19, 335, 551, 730, 776, 928
AsiGI ACCGGT 1 cut(s) 1236
AspLEI GCGC 3 cut(s) 10, 312, 721
AspS9I GGNCC 5 cut(s) 39, 161, 544, 661, 1048
AsuC2I CCSGG 2 cut(s) 548, 1046
AsuHPI GGTGA 1 cut(s) 680
AsuNHI GCTAGC 1 cut(s) 1040
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 4 cut(s) 161, 544, 661, 1048
BaeGI GKGCMC 1 cut(s) 170
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 1 cut(s) 304
BauI CACGAG 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 6 cut(s) 31, 322, 563, 717, 763, 915
BccI CCATC 1 cut(s) 353
BceAI ACGGC 2 cut(s) 67, 1158
BciT130I CCWGG 2 cut(s) 248, 1207
BclI TGATCA 3 cut(s) 424, 796, 868
BcnI CCSGG 2 cut(s) 548, 1046
BcoDI GTCTC 2 cut(s) 237, 358
BfaI CTAG 3 cut(s) 297, 1041, 1243
BfmI CTRYAG 2 cut(s) 600, 929
BfoI RGCGCY 2 cut(s) 313, 722
BfrI CTTAAG 2 cut(s) 305, 455
BglII AGATCT 1 cut(s) 451
BisI GCNGC 6 cut(s) 20, 336, 552, 731, 777, 929
BlsI GCNGC 6 cut(s) 21, 337, 553, 732, 778, 930
Bme1390I CCNGG 4 cut(s) 248, 548, 1046, 1207
Bme18I GGWCC 4 cut(s) 161, 544, 661, 1048
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 5 cut(s) 39, 161, 544, 661, 1048
BmiI GGNNCC 4 cut(s) 40, 162, 591, 1049
BmrFI CCNGG 4 cut(s) 248, 548, 1046, 1207
BmsI GCATC 3 cut(s) 316, 520, 604
BmtI GCTAGC 1 cut(s) 1044
BpmI CTGGAG 1 cut(s) 269
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 548, 1046
BsaBI GATNNNNATC 5 cut(s) 1065, 1104, 1122, 1140, 1215
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 330, 664, 1051, 1206
BsaWI WCCGGW 1 cut(s) 1236
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 109, 1057
Bse118I RCCGGY 1 cut(s) 1236
Bse8I GATNNNNATC 5 cut(s) 1065, 1104, 1122, 1140, 1215
BseBI CCWGG 2 cut(s) 248, 1207
BseDI CCNNGG 4 cut(s) 330, 664, 1051, 1206
BseGI GGATG 3 cut(s) 259, 325, 535
BseJI GATNNNNATC 5 cut(s) 1065, 1104, 1122, 1140, 1215
BseLI CCNNNNNNNGG 3 cut(s) 34, 109, 1057
BseMII CTCAG 3 cut(s) 205, 380, 502
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 6 cut(s) 31, 322, 563, 717, 763, 915
Bsh1236I CGCG 5 cut(s) 8, 90, 810, 1086, 1122
Bsh1285I CGRYCG 3 cut(s) 88, 1126, 1193
BshFI GGCC 2 cut(s) 41, 117
BshNI GGYRCC 1 cut(s) 589
BshTI ACCGGT 1 cut(s) 1236
BsiEI CGRYCG 3 cut(s) 88, 1126, 1193
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 3 cut(s) 547, 1045, 1237
BslFI GGGAC 2 cut(s) 238, 1061
BslI CCNNNNNNNGG 3 cut(s) 34, 109, 1057
BsmAI GTCTC 2 cut(s) 237, 358
BsmFI GGGAC 2 cut(s) 238, 1061
BsnI GGCC 2 cut(s) 41, 117
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 2 cut(s) 170, 304
Bsp68I TCGCGA 3 cut(s) 90, 1086, 1122
BspACI CCGC 2 cut(s) 73, 879
BspANI GGCC 2 cut(s) 41, 117
BspCNI CTCAG 3 cut(s) 204, 379, 501
BspFNI CGCG 5 cut(s) 8, 90, 810, 1086, 1122
BspLI GGNNCC 4 cut(s) 40, 162, 591, 1049
BspMAI CTGCAG 1 cut(s) 933
BspOI GCTAGC 1 cut(s) 1044
BspT107I GGYRCC 1 cut(s) 589
BspTI CTTAAG 2 cut(s) 305, 455
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 1236
BssAI RCCGGY 1 cut(s) 1236
BssECI CCNNGG 4 cut(s) 330, 664, 1051, 1206
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 330, 664
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 2 cut(s) 248, 1207
Bst4CI ACNGT 3 cut(s) 513, 851, 857
Bst6I CTCTTC 2 cut(s) 702, 930
BstAFI CTTAAG 2 cut(s) 305, 455
BstC8I GCNNGC 2 cut(s) 735, 1042
BstDEI CTNAG 4 cut(s) 11, 191, 366, 488
BstF5I GGATG 3 cut(s) 259, 325, 535
BstFNI CGCG 5 cut(s) 8, 90, 810, 1086, 1122
BstH2I RGCGCY 2 cut(s) 313, 722
BstHHI GCGC 3 cut(s) 10, 312, 721
BstMAI GTCTC 2 cut(s) 237, 358
BstMCI CGRYCG 3 cut(s) 88, 1126, 1193
BstMWI GCNNNNNNNGC 7 cut(s) 16, 28, 335, 341, 698, 727, 1083
BstNI CCWGG 2 cut(s) 248, 1207
BstSCI CCNGG 4 cut(s) 246, 546, 1044, 1205
BstSFI CTRYAG 2 cut(s) 600, 929
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 5 cut(s) 8, 90, 810, 1086, 1122
BstV1I GCAGC 6 cut(s) 31, 322, 563, 717, 763, 915
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 2 cut(s) 41, 117
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 259, 325, 535
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 2 cut(s) 771, 856
BtuMI TCGCGA 3 cut(s) 90, 1086, 1122
Cac8I GCNNGC 2 cut(s) 735, 1042
CfoI GCGC 3 cut(s) 10, 312, 721
Cfr10I RCCGGY 1 cut(s) 1236
Cfr13I GGNCC 5 cut(s) 39, 161, 544, 661, 1048
CseI GACGC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 769, 1093, 1240
CspAI ACCGGT 1 cut(s) 1236
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 1 cut(s) 34
CviQI GTAC 3 cut(s) 769, 1093, 1240
DdeI CTNAG 4 cut(s) 11, 191, 366, 488
Eam1104I CTCTTC 2 cut(s) 702, 930
EarI CTCTTC 2 cut(s) 702, 930
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 330, 664
Eco24I GRGCYC 1 cut(s) 304
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 4 cut(s) 161, 544, 661, 1048
Eco47III AGCGCT 1 cut(s) 720
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 3 cut(s) 378, 735, 743
Eco88I CYCGRG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 2 cut(s) 246, 1205
EcoT14I CCWWGG 2 cut(s) 330, 664
EcoT38I GRGCYC 1 cut(s) 304
ErhI CCWWGG 2 cut(s) 330, 664
FaeI CATG 1 cut(s) 37
FaqI GGGAC 2 cut(s) 238, 1061
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 872
FbaI TGATCA 3 cut(s) 424, 796, 868
Fnu4HI GCNGC 6 cut(s) 20, 336, 552, 731, 777, 929
FokI GGATG 3 cut(s) 266, 332, 542
FriOI GRGCYC 1 cut(s) 304
Fsp4HI GCNGC 6 cut(s) 20, 336, 552, 731, 777, 929
FspBI CTAG 3 cut(s) 297, 1041, 1243
GlaI GCGC 3 cut(s) 9, 311, 720
GluI GCNGC 6 cut(s) 20, 336, 552, 731, 777, 929
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 2 cut(s) 313, 722
HaeIII GGCC 2 cut(s) 41, 117
HapII CCGG 3 cut(s) 547, 1045, 1237
HgaI GACGC 1 cut(s) 14
HhaI GCGC 3 cut(s) 10, 312, 721
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 3 cut(s) 8, 310, 719
HinP1I GCGC 3 cut(s) 8, 310, 719
HincII GTYRAC 2 cut(s) 70, 144
HindII GTYRAC 2 cut(s) 70, 144
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 6 cut(s) 460, 758, 949, 1013, 1136, 1160
HpaI GTTAAC 1 cut(s) 144
HpaII CCGG 3 cut(s) 547, 1045, 1237
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 5 cut(s) 70, 144, 178, 516, 771
Hpy188I TCNGA 6 cut(s) 194, 358, 369, 491, 970, 1141
Hpy8I GTNNAC 5 cut(s) 70, 144, 178, 516, 771
Hpy99I CGWCG 2 cut(s) 59, 861
HpyAV CCTTC 2 cut(s) 434, 646
HpyCH4III ACNGT 3 cut(s) 513, 851, 857
HpyCH4IV ACGT 4 cut(s) 57, 518, 1033, 1201
HpyCH4V TGCA 3 cut(s) 187, 617, 931
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 28, 335, 341, 698, 727, 1083
HpyF3I CTNAG 4 cut(s) 11, 191, 366, 488
HpySE526I ACGT 4 cut(s) 57, 518, 1033, 1201
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 3 cut(s) 8, 310, 719
Ksp22I TGATCA 3 cut(s) 424, 796, 868
KspAI GTTAAC 1 cut(s) 144
LmnI GCTCC 5 cut(s) 827, 988, 1037, 1074, 1151
Lsp1109I GCAGC 6 cut(s) 31, 322, 563, 717, 763, 915
LweI GCATC 3 cut(s) 316, 520, 604
MaeI CTAG 3 cut(s) 297, 1041, 1243
MaeII ACGT 4 cut(s) 57, 518, 1033, 1201
MaeIII GTNAC 6 cut(s) 361, 519, 815, 851, 1004, 1179
MboII GAAGA 5 cut(s) 494, 661, 719, 736, 947
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 2 cut(s) 170, 304
MluCI AATT 2 cut(s) 291, 1153
MluI ACGCGT 1 cut(s) 808
MlyI GAGTC 1 cut(s) 958
MseI TTAA 3 cut(s) 143, 306, 456
MslI CAYNNNNRTG 1 cut(s) 1155
MspCI CTTAAG 2 cut(s) 305, 455
MspI CCGG 3 cut(s) 547, 1045, 1237
MspR9I CCNGG 4 cut(s) 248, 548, 1046, 1207
MvaI CCWGG 2 cut(s) 248, 1207
MvnI CGCG 5 cut(s) 8, 90, 810, 1086, 1122
MwoI GCNNNNNNNGC 7 cut(s) 16, 28, 335, 341, 698, 727, 1083
NciI CCSGG 2 cut(s) 548, 1046
NheI GCTAGC 1 cut(s) 1040
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 4 cut(s) 40, 162, 591, 1049
NmuCI GTSAC 4 cut(s) 815, 851, 1004, 1179
NruI TCGCGA 3 cut(s) 90, 1086, 1122
PaeR7I CTCGAG 1 cut(s) 314
PcsI WCGNNNNNNNCGW 1 cut(s) 1225
PfeI GAWTC 5 cut(s) 460, 758, 1013, 1136, 1160
PflMI CCANNNNNTGG 1 cut(s) 34
PinAI ACCGGT 1 cut(s) 1236
PkrI GCNGC 6 cut(s) 21, 337, 553, 732, 778, 930
Ple19I CGATCG 3 cut(s) 88, 1126, 1193
PleI GAGTC 1 cut(s) 957
PpsI GAGTC 1 cut(s) 957
PpuMI RGGWCCY 1 cut(s) 661
Psp124BI GAGCTC 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 1201
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 2 cut(s) 246, 1205
PspGI CCWGG 2 cut(s) 246, 1205
PspN4I GGNNCC 4 cut(s) 40, 162, 591, 1049
PspPI GGNCC 5 cut(s) 39, 161, 544, 661, 1048
PspPPI RGGWCCY 1 cut(s) 661
PspXI VCTCGAGB 1 cut(s) 314
PstI CTGCAG 1 cut(s) 933
PsuI RGATCY 1 cut(s) 451
PvuI CGATCG 3 cut(s) 88, 1126, 1193
RruI TCGCGA 3 cut(s) 90, 1086, 1122
RsaI GTAC 3 cut(s) 770, 1094, 1241
RsaNI GTAC 3 cut(s) 769, 1093, 1240
RseI CAYNNNNRTG 1 cut(s) 1155
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 3 cut(s) 143, 306, 456
SatI GCNGC 6 cut(s) 20, 336, 552, 731, 777, 929
Sau96I GGNCC 5 cut(s) 39, 161, 544, 661, 1048
SchI GAGTC 1 cut(s) 958
ScrFI CCNGG 4 cut(s) 248, 548, 1046, 1207
SduI GDGCHC 2 cut(s) 170, 304
SfaNI GCATC 3 cut(s) 316, 520, 604
SfcI CTRYAG 2 cut(s) 600, 929
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 4 cut(s) 161, 544, 661, 1048
SlaI CTCGAG 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 1155
SmlI CTYRAG 4 cut(s) 305, 314, 383, 455
SmoI CTYRAG 4 cut(s) 305, 314, 383, 455
Sse9I AATT 2 cut(s) 291, 1153
SsiI CCGC 2 cut(s) 73, 879
SspMI CTAG 3 cut(s) 297, 1041, 1243
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 4 cut(s) 246, 546, 1044, 1205
StyI CCWWGG 2 cut(s) 330, 664
TaaI ACNGT 3 cut(s) 513, 851, 857
TaiI ACGT 4 cut(s) 60, 521, 1036, 1204
TaqI TCGA 4 cut(s) 24, 315, 1102, 1193
TaqII GACCGA 1 cut(s) 1065
TasI AATT 2 cut(s) 291, 1153
TatI WGTACW 1 cut(s) 768
TfiI GAWTC 5 cut(s) 460, 758, 1013, 1136, 1160
Tru1I TTAA 3 cut(s) 143, 306, 456
Tru9I TTAA 3 cut(s) 143, 306, 456
TscAI CASTG 2 cut(s) 778, 856
TseFI GTSAC 4 cut(s) 815, 851, 1004, 1179
TseI GCWGC 6 cut(s) 19, 335, 551, 730, 776, 928
Tsp45I GTSAC 4 cut(s) 815, 851, 1004, 1179
TspDTI ATGAA 3 cut(s) 654, 702, 878
TspGWI ACGGA 2 cut(s) 153, 899
TspRI CASTG 2 cut(s) 778, 856
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 2 cut(s) 305, 455
VpaK11BI GGWCC 4 cut(s) 161, 544, 661, 1048
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 314
XspI CTAG 3 cut(s) 297, 1041, 1243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.