AT5G17440

LUC7 N_terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007777
Physical Location & Seq
Forward (+)
5749723 .. 5753772
4050 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G17440.1

Sequence Viewer

Length: 1215 bp
ATGGACGCTATGAGGAAGCAACTCGATGTGCTCATGGGAGCTAACAGAAACGGCGATGTCACTGAGGTCAATCGCAAATACTACGACCGCGATGTTTGCCGTCTTTACCTCTCTGGTCTCTGCCCTCACGAGCTTTTCCAATTGACGAAAATGGATATGGGTCCTTGCCCAAAGGTGCACTCTTTGCAGCTGAGGAAAGAATATAAAGATGCAAAGGCAAAAGGTGTTGACAACTATGATAGGGAATTGGAAGATGCGATAGATAGGCTTATTGTTGAGTGTGATAGGAAGATTGGTAGGGCTCTTAATCGTCTTCAAGAAGAGGATGCCAAAGCTGCCATTGCAATTTCTGTCACAGAATTTACTCAGTCACCTGAAATTCTTGAATTATCGAAGCAAATCAAAGAAAAGATGAAGGAAGCAGACCTGCACGATCTTGAAGGCAAAACAGATCTGAAGATTAGAGCTCTTGAGTTAGTTGAAGAGATGAGGACGAAGAGAGCTGACCTACAGGCTGTGCTACTGTTGGATGCCTTTAACAAAGATAGGACATCCTTGCAACAGGCAGTTCCAGCTCAGCAACCAGCTGCAACTTTACCTCCGCCCGATCCTCGTACTCAAGAAATGATCAATGAAAAACTAAAGAAAGCAGAAGAGCTTGGTGAACAAGGGATGGTTGATGAAGCGCAGAAAGCACTAGAAGAGGCGGAAGCTCTTAAGAAGCTTACTGCTAGACAAGAACCTGTAGTGGATTCAACCAAGTACACTGCTGCTGACGTGCGCATTACAGACCAGAAGCTGCGTCTATGTGACATATGCGGAGCATTTTTGAGCGTCTATGACAGTGATCGTCGGTTAGCTGATCATTTTGGAGGGAAGCTTCACTTGGGTTACATGCTGATCCGCGACAAATTGGCAGAGCTTCAGGAGGAGAAGAACAAAGTTCACAAGGAACGGGTCGAAGAAAGGAGATCAAAGGAGAGGAGTAGAGAGCGAGAATCAAGTAAAGACAGAGACGGAGGAGATAACCGTGACCGAGGAAGAGATGTTGACCGCAGGAGTAGAGATCGTGACAGGCACCATGACCACCGAGAACATGACAGAAACTATAATCAGTCACGTGGCTATGACTCAAGAAGCCGGCGCAGTTCACGGTCCCGGTCTAGGGAAAGACCGAGGGATCATGATCGCCGCAGACGCCATGACCGCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

404

Amino Acids

47.23

Weight (kDa)

8.69

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 172 1.5e-37 LUC7 N_terminus
LUC7 PF03194 205 - 325 1.1e-31 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 782
Acc36I ACCTGC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 1077
AccII CGCG 2 cut(s) 90, 906
AciI CCGC 8 cut(s) 88, 602, 707, 819, 904, 1054, 1192, 1207
AclWI GGATC 3 cut(s) 602, 895, 1188
AcsI RAATTY 2 cut(s) 359, 378
AcuI CTGAAG 2 cut(s) 476, 908
AcvI CACGTG 1 cut(s) 1121
AcyI GRCGYC 1 cut(s) 1198
AfaI GTAC 2 cut(s) 616, 764
AfiI CCNNNNNNNGG 2 cut(s) 1164, 1165
AflII CTTAAG 1 cut(s) 716
AgsI TTSAA 5 cut(s) 317, 386, 440, 482, 756
AjiI CACGTC 1 cut(s) 778
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
Alw21I GWGCWC 3 cut(s) 33, 180, 469
Alw26I GTCTC 2 cut(s) 122, 1008
Alw44I GTGCAC 1 cut(s) 176
AlwI GGATC 3 cut(s) 602, 895, 1188
AlwNI CAGNNNCTG 1 cut(s) 799
ApaLI GTGCAC 1 cut(s) 176
ApeKI GCWGC 5 cut(s) 187, 335, 587, 770, 799
ApoI RAATTY 2 cut(s) 359, 378
AspLEI GCGC 3 cut(s) 688, 783, 1146
AspS9I GGNCC 2 cut(s) 161, 1155
AsuC2I CCSGG 1 cut(s) 1159
AsuHPI GGTGA 2 cut(s) 363, 674
AvaII GGWCC 2 cut(s) 161, 1155
BaeGI GKGCMC 1 cut(s) 180
BanI GGYRCC 1 cut(s) 1077
BanII GRGCYC 2 cut(s) 304, 469
BauI CACGAG 1 cut(s) 128
BbrPI CACGTG 1 cut(s) 1121
BbsI GAAGAC 1 cut(s) 305
Bbv12I GWGCWC 3 cut(s) 33, 180, 469
BbvCI CCTCAGC 1 cut(s) 191
BbvI GCAGC 5 cut(s) 199, 322, 574, 757, 786
BccI CCATC 1 cut(s) 667
BceAI ACGGC 2 cut(s) 67, 84
BclI TGATCA 2 cut(s) 627, 862
BcnI CCSGG 1 cut(s) 1159
BcoDI GTCTC 2 cut(s) 122, 1008
BfaI CTAG 3 cut(s) 698, 732, 1164
BfmI CTRYAG 2 cut(s) 509, 744
BfrI CTTAAG 1 cut(s) 716
BfuAI ACCTGC 1 cut(s) 435
BglII AGATCT 1 cut(s) 451
BisI GCNGC 6 cut(s) 188, 336, 588, 771, 800, 1192
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 6 cut(s) 189, 337, 589, 772, 801, 1193
Bme1390I CCNGG 1 cut(s) 1159
Bme18I GGWCC 2 cut(s) 161, 1155
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 161, 1155
BmiI GGNNCC 3 cut(s) 162, 1079, 1157
BmrFI CCNGG 1 cut(s) 1159
BmsI GCATC 4 cut(s) 199, 244, 316, 520
BpiI GAAGAC 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 191
Bpu1102I GCTNAGC 1 cut(s) 576
BpuEI CTTGAG 3 cut(s) 491, 603, 1117
BpuMI CCSGG 1 cut(s) 1159
BsaAI YACGTR 1 cut(s) 1121
BsaBI GATNNNNATC 1 cut(s) 1185
BsaHI GRCGYC 1 cut(s) 1198
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 1036, 1175
BsaXI ACNNNNNCTCC 2 cut(s) 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 1164, 1165
Bse118I RCCGGY 1 cut(s) 1140
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 1185
BseDI CCNNGG 2 cut(s) 1036, 1175
BseGI GGATG 4 cut(s) 331, 535, 551, 678
BseJI GATNNNNATC 1 cut(s) 1185
BseLI CCNNNNNNNGG 2 cut(s) 1164, 1165
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 4 cut(s) 54, 182, 380, 590
BseRI GAGGAG 3 cut(s) 944, 997, 1035
BseSI GKGCMC 1 cut(s) 180
BseXI GCAGC 5 cut(s) 199, 322, 574, 757, 786
BsgI GTGCAG 1 cut(s) 413
Bsh1236I CGCG 2 cut(s) 90, 906
Bsh1285I CGRYCG 1 cut(s) 88
BshNI GGYRCC 1 cut(s) 1077
BsiEI CGRYCG 1 cut(s) 88
BsiHKAI GWGCWC 3 cut(s) 33, 180, 469
BsiSI CCGG 2 cut(s) 1141, 1159
BslFI GGGAC 1 cut(s) 1141
BslI CCNNNNNNNGG 2 cut(s) 1164, 1165
BsmAI GTCTC 2 cut(s) 122, 1008
BsmBI CGTCTC 1 cut(s) 1008
BsmFI GGGAC 1 cut(s) 1141
Bso31I GGTCTC 1 cut(s) 122
Bsp1286I GDGCHC 4 cut(s) 33, 180, 304, 469
Bsp1720I GCTNAGC 1 cut(s) 576
BspACI CCGC 8 cut(s) 88, 602, 707, 819, 904, 1054, 1192, 1207
BspCNI CTCAG 4 cut(s) 55, 183, 379, 589
BspFNI CGCG 2 cut(s) 90, 906
BspHI TCATGA 1 cut(s) 1183
BspLI GGNNCC 3 cut(s) 162, 1079, 1157
BspMI ACCTGC 1 cut(s) 435
BspPI GGATC 3 cut(s) 602, 895, 1188
BspQI GCTCTTC 1 cut(s) 648
BspT107I GGYRCC 1 cut(s) 1077
BspTI CTTAAG 1 cut(s) 716
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 1140
BssAI RCCGGY 1 cut(s) 1140
BssECI CCNNGG 2 cut(s) 1036, 1175
BssNI GRCGYC 1 cut(s) 1198
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
Bst4CI ACNGT 4 cut(s) 525, 845, 1031, 1155
Bst6I CTCTTC 6 cut(s) 315, 477, 491, 648, 696, 1036
BstACI GRCGYC 1 cut(s) 1198
BstAFI CTTAAG 1 cut(s) 716
BstAPI GCANNNNNTGC 1 cut(s) 184
BstBAI YACGTR 1 cut(s) 1121
BstC8I GCNNGC 1 cut(s) 1142
BstDEI CTNAG 4 cut(s) 63, 191, 366, 576
BstF5I GGATG 4 cut(s) 331, 535, 551, 678
BstFNI CGCG 2 cut(s) 90, 906
BstHHI GCGC 3 cut(s) 688, 783, 1146
BstMAI GTCTC 2 cut(s) 122, 1008
BstMCI CGRYCG 1 cut(s) 88
BstMWI GCNNNNNNNGC 8 cut(s) 96, 184, 335, 341, 572, 692, 1197, 1206
BstNSI RCATGY 1 cut(s) 898
BstSCI CCNGG 1 cut(s) 1157
BstSFI CTRYAG 2 cut(s) 509, 744
BstSLI GKGCMC 1 cut(s) 180
BstUI CGCG 2 cut(s) 90, 906
BstV1I GCAGC 5 cut(s) 199, 322, 574, 757, 786
BstV2I GAAGAC 1 cut(s) 305
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BtgZI GCGATG 2 cut(s) 69, 105
BtrI CACGTC 1 cut(s) 778
BtsCI GGATG 4 cut(s) 331, 535, 551, 678
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 3 cut(s) 60, 765, 850
BveI ACCTGC 1 cut(s) 435
Cac8I GCNNGC 1 cut(s) 1142
CaiI CAGNNNCTG 1 cut(s) 799
CciI TCATGA 1 cut(s) 1183
CfoI GCGC 3 cut(s) 688, 783, 1146
Cfr10I RCCGGY 1 cut(s) 1140
Cfr13I GGNCC 2 cut(s) 161, 1155
CseI GACGC 4 cut(s) 14, 791, 823, 1206
Csp6I GTAC 2 cut(s) 615, 763
CviAII CATG 6 cut(s) 34, 895, 1082, 1097, 1184, 1202
CviQI GTAC 2 cut(s) 615, 763
DdeI CTNAG 4 cut(s) 63, 191, 366, 576
Eam1104I CTCTTC 6 cut(s) 315, 477, 491, 648, 696, 1036
EarI CTCTTC 6 cut(s) 315, 477, 491, 648, 696, 1036
EciI GGCGGA 2 cut(s) 591, 722
Ecl136II GAGCTC 1 cut(s) 467
Eco24I GRGCYC 2 cut(s) 304, 469
Eco31I GGTCTC 1 cut(s) 122
Eco47I GGWCC 2 cut(s) 161, 1155
Eco53kI GAGCTC 1 cut(s) 467
Eco57I CTGAAG 2 cut(s) 476, 908
Eco72I CACGTG 1 cut(s) 1121
EcoICRI GAGCTC 1 cut(s) 467
EcoO109I RGGNCCY 1 cut(s) 161
EcoT38I GRGCYC 2 cut(s) 304, 469
Esp3I CGTCTC 1 cut(s) 1008
FaeI CATG 6 cut(s) 37, 898, 1085, 1100, 1187, 1205
FalI AAGNNNNNCTT 2 cut(s) 869, 901
FaqI GGGAC 1 cut(s) 1141
FatI CATG 6 cut(s) 33, 894, 1081, 1096, 1183, 1201
FauNDI CATATG 1 cut(s) 815
FbaI TGATCA 2 cut(s) 627, 862
Fnu4HI GCNGC 6 cut(s) 188, 336, 588, 771, 800, 1192
FokI GGATG 4 cut(s) 338, 538, 542, 685
FriOI GRGCYC 2 cut(s) 304, 469
Fsp4HI GCNGC 6 cut(s) 188, 336, 588, 771, 800, 1192
FspAI RTGCGCAY 1 cut(s) 782
FspBI CTAG 3 cut(s) 698, 732, 1164
FspI TGCGCA 1 cut(s) 782
GlaI GCGC 3 cut(s) 687, 782, 1145
GluI GCNGC 6 cut(s) 188, 336, 588, 771, 800, 1192
HapII CCGG 2 cut(s) 1141, 1159
HgaI GACGC 4 cut(s) 14, 791, 823, 1206
HhaI GCGC 3 cut(s) 688, 783, 1146
Hin1I GRCGYC 1 cut(s) 1198
Hin1II CATG 6 cut(s) 37, 898, 1085, 1100, 1187, 1205
Hin6I GCGC 3 cut(s) 686, 781, 1144
HinP1I GCGC 3 cut(s) 686, 781, 1144
HincII GTYRAC 2 cut(s) 229, 1051
HindII GTYRAC 2 cut(s) 229, 1051
HindIII AAGCTT 2 cut(s) 722, 878
HinfI GANTC 3 cut(s) 752, 998, 1130
HpaII CCGG 2 cut(s) 1141, 1159
HphI GGTGA 2 cut(s) 363, 674
Hpy166II GTNNAC 7 cut(s) 178, 229, 665, 765, 946, 1051, 1151
Hpy188I TCNGA 1 cut(s) 456
Hpy8I GTNNAC 7 cut(s) 178, 229, 665, 765, 946, 1051, 1151
Hpy99I CGWCG 1 cut(s) 855
HpyAV CCTTC 2 cut(s) 409, 434
HpyCH4III ACNGT 4 cut(s) 525, 845, 1031, 1155
HpyCH4IV ACGT 2 cut(s) 777, 1120
HpyCH4V TGCA 7 cut(s) 178, 187, 212, 344, 430, 559, 590
HpyF10VI GCNNNNNNNGC 8 cut(s) 96, 184, 335, 341, 572, 692, 1197, 1206
HpyF3I CTNAG 4 cut(s) 63, 191, 366, 576
HpySE526I ACGT 2 cut(s) 777, 1120
Hsp92I GRCGYC 1 cut(s) 1198
Hsp92II CATG 6 cut(s) 37, 898, 1085, 1100, 1187, 1205
HspAI GCGC 3 cut(s) 686, 781, 1144
KroI GCCGGC 1 cut(s) 1140
KroNI GCCGGC 1 cut(s) 1142
Ksp22I TGATCA 2 cut(s) 627, 862
LguI GCTCTTC 1 cut(s) 648
LmnI GCTCC 2 cut(s) 38, 821
Lsp1109I GCAGC 5 cut(s) 199, 322, 574, 757, 786
LweI GCATC 4 cut(s) 199, 244, 316, 520
MaeI CTAG 3 cut(s) 698, 732, 1164
MaeII ACGT 2 cut(s) 777, 1120
MaeIII GTNAC 8 cut(s) 58, 352, 369, 809, 890, 1031, 1070, 1116
MfeI CAATTG 1 cut(s) 140
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 4 cut(s) 33, 180, 304, 469
MluCI AATT 7 cut(s) 140, 245, 345, 359, 378, 386, 911
MlyI GAGTC 1 cut(s) 1124
MmeI TCCRAC 1 cut(s) 507
MroNI GCCGGC 1 cut(s) 1140
MseI TTAA 3 cut(s) 306, 537, 717
MspA1I CMGCKG 2 cut(s) 190, 587
MspCI CTTAAG 1 cut(s) 716
MspI CCGG 2 cut(s) 1141, 1159
MspR9I CCNGG 1 cut(s) 1159
MunI CAATTG 1 cut(s) 140
MvnI CGCG 2 cut(s) 90, 906
MwoI GCNNNNNNNGC 8 cut(s) 96, 184, 335, 341, 572, 692, 1197, 1206
NaeI GCCGGC 1 cut(s) 1142
NciI CCSGG 1 cut(s) 1159
NdeI CATATG 1 cut(s) 815
NgoMIV GCCGGC 1 cut(s) 1140
NlaIII CATG 6 cut(s) 37, 898, 1085, 1100, 1187, 1205
NlaIV GGNNCC 3 cut(s) 162, 1079, 1157
NmuCI GTSAC 7 cut(s) 58, 352, 369, 809, 1031, 1070, 1116
NsbI TGCGCA 1 cut(s) 782
NspI RCATGY 1 cut(s) 898
PagI TCATGA 1 cut(s) 1183
PciSI GCTCTTC 1 cut(s) 648
PdiI GCCGGC 1 cut(s) 1142
PfeI GAWTC 2 cut(s) 752, 998
PkrI GCNGC 6 cut(s) 189, 337, 589, 772, 801, 1193
PleI GAGTC 1 cut(s) 1124
PmaCI CACGTG 1 cut(s) 1121
PmlI CACGTG 1 cut(s) 1121
PpsI GAGTC 1 cut(s) 1124
Ppu21I YACGTR 1 cut(s) 1121
PpuMI RGGWCCY 1 cut(s) 161
Psp124BI GAGCTC 1 cut(s) 469
Psp5II RGGWCCY 1 cut(s) 161
PspCI CACGTG 1 cut(s) 1121
PspN4I GGNNCC 3 cut(s) 162, 1079, 1157
PspPI GGNCC 2 cut(s) 161, 1155
PspPPI RGGWCCY 1 cut(s) 161
PstNI CAGNNNCTG 1 cut(s) 799
PsuI RGATCY 1 cut(s) 451
PvuII CAGCTG 2 cut(s) 190, 587
RsaI GTAC 2 cut(s) 616, 764
RsaNI GTAC 2 cut(s) 615, 763
SacI GAGCTC 1 cut(s) 469
SapI GCTCTTC 1 cut(s) 648
SaqAI TTAA 3 cut(s) 306, 537, 717
SatI GCNGC 6 cut(s) 188, 336, 588, 771, 800, 1192
Sau96I GGNCC 2 cut(s) 161, 1155
SchI GAGTC 1 cut(s) 1124
ScrFI CCNGG 1 cut(s) 1159
SduI GDGCHC 4 cut(s) 33, 180, 304, 469
SfaNI GCATC 4 cut(s) 199, 244, 316, 520
SfcI CTRYAG 2 cut(s) 509, 744
SinI GGWCC 2 cut(s) 161, 1155
SmlI CTYRAG 4 cut(s) 470, 618, 716, 1132
SmoI CTYRAG 4 cut(s) 470, 618, 716, 1132
Sse9I AATT 7 cut(s) 140, 245, 345, 359, 378, 386, 911
SsiI CCGC 8 cut(s) 88, 602, 707, 819, 904, 1054, 1192, 1207
SspMI CTAG 3 cut(s) 698, 732, 1164
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 1 cut(s) 1157
TaaI ACNGT 4 cut(s) 525, 845, 1031, 1155
TaiI ACGT 2 cut(s) 780, 1123
TaqI TCGA 3 cut(s) 24, 392, 960
TaqII GACCGA 2 cut(s) 1050, 1189
TasI AATT 7 cut(s) 140, 245, 345, 359, 378, 386, 911
TatI WGTACW 1 cut(s) 762
TauI GCSGC 1 cut(s) 1194
TfiI GAWTC 2 cut(s) 752, 998
Tru1I TTAA 3 cut(s) 306, 537, 717
Tru9I TTAA 3 cut(s) 306, 537, 717
TscAI CASTG 3 cut(s) 67, 772, 850
TseFI GTSAC 7 cut(s) 58, 352, 369, 809, 1031, 1070, 1116
TseI GCWGC 5 cut(s) 187, 335, 587, 770, 799
Tsp45I GTSAC 7 cut(s) 58, 352, 369, 809, 1031, 1070, 1116
TspDTI ATGAA 3 cut(s) 428, 648, 696
TspGWI ACGGA 1 cut(s) 1032
TspRI CASTG 3 cut(s) 67, 772, 850
Vha464I CTTAAG 1 cut(s) 716
VneI GTGCAC 1 cut(s) 176
VpaK11BI GGWCC 2 cut(s) 161, 1155
XapI RAATTY 2 cut(s) 359, 378
XceI RCATGY 1 cut(s) 898
XspI CTAG 3 cut(s) 698, 732, 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.