MD04G1246800.v1.1

RNA-binding protein Luc7-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
32175456 .. 32180903
5448 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1246800.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGACGCGCTGAGGAAGCAGCTCGACCAGCTCATGGGGGCCAACCGAAACGGCGACGTCCGGGAGGTCAACCGCAAGTATTACGATCGTGATGTGTGTCGCCTCTACTTGGTCGGCCTCTGCCCCCACGAGCTTTTCCAGTTAACGAAAATGGATATGGGTCCGTGCCCTAAGGTCCACTCTTTGCAGCTCAGGAAAGAATACGAAGAAGCGAAAGCGAATGGGACTGATAACTATGACAGAGACCTGGAGGATGTCATAGATAGGCTCATTGTTGAGTGTGATAGGAAAATTAATAGAGCTCTGAAGCGCCTCGAGGATGACGATGCCAAGGCTGCTATTGCCATTTCTGTCTCTGAGGTTACTCAGACACCAGAGATACTTGAGTTGTCAAAGCAGATCAAGGAGAAGTTGAAAGAAGTTGATCAATATGATCTTGAAGGCAAGACAGATCTTAAGATTCGGGCTCTGGAGATTGTAGAAGAACTCAGAGGCAATAGAGCAGATAAACAGTCCACATTACTTTTGGACGCTTTCAATAAGGATCGGGCAGCTTTACCACAACCCCTACCAAATCCACCTCCTTTGGCACCATTGCCCGTAGTTGTTCCTGATGCTCGAACACAGGAAATGATAAATGAAAAGTTGAAGAAGGCAGAGGACCTTGGTGAGCAAGGTATGGTTGATGAGGCACAAAAAGCACTGGAAGAGGCTGAAGCACTGAAGAAGCTGCCTGCGAGACAAGAGCCTATCCTGGATTCCTCCAAGTACACTGCTGCTGATGTGCGAATTACTGATCAAAAGCTACGCGTATGTGATATCTGTGGAGCATTTTTGAGTGTTTATGACAGTGACCGTCGGCTAGCTGATCACTTTGGCGGGAAGCTTCATTTAGGCTATATGCAAATCCGTGAGAAGTTAGCAGAGCTGCAGGAAGAGAGAAACAAGAGTCGTAAGGTCGATAGGTCTGATGATAGGAGATCAAAGGAGCGAAGTAAGGATCGGGACAGGGAATTAAGTAGGGATAGAGAACGCGGAGCTAGCCGCGACCGGGGTAGGGATCATGATCGTAGGAGCAGAGATCATGATAGATACTATGATCGAGATCGCAGATATGATCGCGAACATGACAGAGATTCAGATCGCTCCCGCAATTATGATTCGAGAAGTCGCCACAGGTCGCGGTCAAGGGAACGTTCCAGGGATTATGATCGCCACAGGCGTTATGATCGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

413

Amino Acids

48.54

Weight (kDa)

8.34

Isoelectric Point (pI)

54.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 171 1.5e-39 LUC7 N_terminus
LUC7 PF03194 208 - 325 2.3e-31 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AbsI CCTCGAGG 1 cut(s) 314
AccB1I GGYRCC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 6 cut(s) 8, 810, 1035, 1047, 1122, 1183
AciI CCGC 6 cut(s) 73, 879, 1035, 1045, 1150, 1183
AclI AACGTT 1 cut(s) 1195
AclWI GGATC 3 cut(s) 552, 1008, 1068
AcuI CTGAAG 3 cut(s) 326, 735, 743
AcyI GRCGYC 1 cut(s) 57
AfaI GTAC 2 cut(s) 770, 1235
AfiI CCNNNNNNNGG 4 cut(s) 34, 109, 1051, 1057
AflII CTTAAG 1 cut(s) 455
AflIII ACRYGT 1 cut(s) 808
AgsI TTSAA 4 cut(s) 415, 440, 538, 649
AjnI CCWGG 3 cut(s) 246, 753, 1199
Alw21I GWGCWC 1 cut(s) 304
Alw26I GTCTC 3 cut(s) 237, 358, 733
AlwI GGATC 3 cut(s) 552, 1008, 1068
Ama87I CYCGRG 1 cut(s) 314
AoxI GGCC 2 cut(s) 39, 115
ApeKI GCWGC 7 cut(s) 19, 187, 335, 551, 730, 776, 928
AseI ATTAAT 1 cut(s) 294
AspLEI GCGC 2 cut(s) 10, 312
AspS9I GGNCC 4 cut(s) 39, 161, 175, 661
AsuC2I CCSGG 2 cut(s) 62, 1052
AsuHPI GGTGA 1 cut(s) 680
AsuNHI GCTAGC 2 cut(s) 862, 1040
AvaI CYCGRG 1 cut(s) 314
AvaII GGWCC 3 cut(s) 161, 175, 661
AxyI CCTNAGG 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 170
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 2 cut(s) 304, 469
BauI CACGAG 1 cut(s) 128
Bbv12I GWGCWC 1 cut(s) 304
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 7 cut(s) 31, 199, 322, 563, 717, 763, 915
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 3 cut(s) 248, 755, 1201
BclI TGATCA 3 cut(s) 424, 796, 868
BcnI CCSGG 2 cut(s) 62, 1052
BcoDI GTCTC 3 cut(s) 237, 358, 733
BfaI CTAG 3 cut(s) 863, 1041, 1237
BfmI CTRYAG 1 cut(s) 929
BfoI RGCGCY 1 cut(s) 313
BfrI CTTAAG 1 cut(s) 455
BglII AGATCT 1 cut(s) 451
BisI GCNGC 8 cut(s) 20, 188, 336, 552, 731, 777, 929, 1045
BlsI GCNGC 8 cut(s) 21, 189, 337, 553, 732, 778, 930, 1046
Bme1390I CCNGG 5 cut(s) 62, 248, 755, 1052, 1201
Bme18I GGWCC 3 cut(s) 161, 175, 661
BmeT110I CYCGRG 1 cut(s) 314
BmgT120I GGNCC 4 cut(s) 39, 161, 175, 661
BmiI GGNNCC 3 cut(s) 40, 162, 591
BmrFI CCNGG 5 cut(s) 62, 248, 755, 1052, 1201
BmsI GCATC 2 cut(s) 316, 604
BmtI GCTAGC 2 cut(s) 866, 1044
BpmI CTGGAG 2 cut(s) 269, 491
Bpu10I CCTNAGC 2 cut(s) 11, 191
BpuEI CTTGAG 1 cut(s) 404
BpuMI CCSGG 2 cut(s) 62, 1052
BsaBI GATNNNNATC 4 cut(s) 1065, 1104, 1140, 1209
BsaHI GRCGYC 1 cut(s) 57
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 4 cut(s) 330, 664, 1051, 1200
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 109, 1051, 1057
Bse1I ACTGG 2 cut(s) 139, 708
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 593
Bse8I GATNNNNATC 4 cut(s) 1065, 1104, 1140, 1209
BseBI CCWGG 3 cut(s) 248, 755, 1201
BseDI CCNNGG 4 cut(s) 330, 664, 1051, 1200
BseGI GGATG 2 cut(s) 259, 325
BseJI GATNNNNATC 4 cut(s) 1065, 1104, 1140, 1209
BseLI CCNNNNNNNGG 4 cut(s) 34, 109, 1051, 1057
BseMI GCAATG 1 cut(s) 593
BseMII CTCAG 4 cut(s) 205, 348, 380, 502
BseNI ACTGG 2 cut(s) 139, 708
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 7 cut(s) 31, 199, 322, 563, 717, 763, 915
Bsh1236I CGCG 6 cut(s) 8, 810, 1035, 1047, 1122, 1183
Bsh1285I CGRYCG 2 cut(s) 88, 1051
BshFI GGCC 2 cut(s) 41, 117
BshNI GGYRCC 1 cut(s) 589
BsiEI CGRYCG 2 cut(s) 88, 1051
BsiHKAI GWGCWC 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 314
BsiSI CCGG 2 cut(s) 61, 1051
BslFI GGGAC 2 cut(s) 238, 1019
BslI CCNNNNNNNGG 4 cut(s) 34, 109, 1051, 1057
BsmAI GTCTC 3 cut(s) 237, 358, 733
BsmFI GGGAC 2 cut(s) 238, 1019
BsnI GGCC 2 cut(s) 41, 117
Bso31I GGTCTC 1 cut(s) 237
BsoBI CYCGRG 1 cut(s) 314
Bsp1286I GDGCHC 3 cut(s) 170, 304, 469
Bsp68I TCGCGA 1 cut(s) 1122
BspACI CCGC 6 cut(s) 73, 879, 1035, 1045, 1150, 1183
BspANI GGCC 2 cut(s) 41, 117
BspCNI CTCAG 4 cut(s) 204, 349, 379, 501
BspFNI CGCG 6 cut(s) 8, 810, 1035, 1047, 1122, 1183
BspHI TCATGA 2 cut(s) 1063, 1084
BspLI GGNNCC 3 cut(s) 40, 162, 591
BspMAI CTGCAG 1 cut(s) 933
BspOI GCTAGC 2 cut(s) 866, 1044
BspPI GGATC 3 cut(s) 552, 1008, 1068
BspT107I GGYRCC 1 cut(s) 589
BspTI CTTAAG 1 cut(s) 455
BspTNI GGTCTC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 593
BsrI ACTGG 2 cut(s) 139, 708
BssECI CCNNGG 4 cut(s) 330, 664, 1051, 1200
BssNI GRCGYC 1 cut(s) 57
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 330, 664
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 248, 755, 1201
Bst4CI ACNGT 3 cut(s) 513, 851, 857
Bst6I CTCTTC 2 cut(s) 702, 930
BstACI GRCGYC 1 cut(s) 57
BstAFI CTTAAG 1 cut(s) 455
BstC8I GCNNGC 3 cut(s) 735, 864, 1042
BstDEI CTNAG 6 cut(s) 11, 171, 191, 357, 366, 488
BstF5I GGATG 2 cut(s) 259, 325
BstFNI CGCG 6 cut(s) 8, 810, 1035, 1047, 1122, 1183
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 2 cut(s) 10, 312
BstMAI GTCTC 3 cut(s) 237, 358, 733
BstMCI CGRYCG 2 cut(s) 88, 1051
BstMWI GCNNNNNNNGC 6 cut(s) 16, 28, 335, 341, 698, 1041
BstNI CCWGG 3 cut(s) 248, 755, 1201
BstSCI CCNGG 5 cut(s) 60, 246, 753, 1050, 1199
BstSFI CTRYAG 1 cut(s) 929
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 6 cut(s) 8, 810, 1035, 1047, 1122, 1183
BstV1I GCAGC 7 cut(s) 31, 199, 322, 563, 717, 763, 915
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 2 cut(s) 41, 117
BtsCI GGATG 2 cut(s) 259, 325
BtsI GCAGTG 1 cut(s) 771
BtsIMutI CAGTG 4 cut(s) 701, 719, 771, 856
BtuMI TCGCGA 1 cut(s) 1122
Cac8I GCNNGC 3 cut(s) 735, 864, 1042
CciI TCATGA 2 cut(s) 1063, 1084
CfoI GCGC 2 cut(s) 10, 312
Cfr13I GGNCC 4 cut(s) 39, 161, 175, 661
CseI GACGC 2 cut(s) 14, 539
Csp6I GTAC 2 cut(s) 769, 1234
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 4 cut(s) 34, 1064, 1085, 1127
CviQI GTAC 2 cut(s) 769, 1234
DdeI CTNAG 6 cut(s) 11, 171, 191, 357, 366, 488
Eam1104I CTCTTC 2 cut(s) 702, 930
EarI CTCTTC 2 cut(s) 702, 930
Ecl136II GAGCTC 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 330, 664
Eco24I GRGCYC 2 cut(s) 304, 469
Eco31I GGTCTC 1 cut(s) 237
Eco32I GATATC 1 cut(s) 820
Eco47I GGWCC 3 cut(s) 161, 175, 661
Eco53kI GAGCTC 1 cut(s) 302
Eco57I CTGAAG 3 cut(s) 326, 735, 743
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 314
EcoICRI GAGCTC 1 cut(s) 302
EcoO109I RGGNCCY 1 cut(s) 661
EcoRII CCWGG 3 cut(s) 246, 753, 1199
EcoRV GATATC 1 cut(s) 820
EcoT14I CCWWGG 2 cut(s) 330, 664
EcoT38I GRGCYC 2 cut(s) 304, 469
ErhI CCWWGG 2 cut(s) 330, 664
FaeI CATG 4 cut(s) 37, 1067, 1088, 1130
FaqI GGGAC 2 cut(s) 238, 1019
FatI CATG 4 cut(s) 33, 1063, 1084, 1126
FauI CCCGC 2 cut(s) 872, 1157
FbaI TGATCA 3 cut(s) 424, 796, 868
Fnu4HI GCNGC 8 cut(s) 20, 188, 336, 552, 731, 777, 929, 1045
FokI GGATG 2 cut(s) 266, 332
FriOI GRGCYC 2 cut(s) 304, 469
Fsp4HI GCNGC 8 cut(s) 20, 188, 336, 552, 731, 777, 929, 1045
FspBI CTAG 3 cut(s) 863, 1041, 1237
GlaI GCGC 2 cut(s) 9, 311
GluI GCNGC 8 cut(s) 20, 188, 336, 552, 731, 777, 929, 1045
GsuI CTGGAG 2 cut(s) 269, 491
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 2 cut(s) 41, 117
HapII CCGG 2 cut(s) 61, 1051
HgaI GACGC 2 cut(s) 14, 539
HhaI GCGC 2 cut(s) 10, 312
Hin1I GRCGYC 1 cut(s) 57
Hin1II CATG 4 cut(s) 37, 1067, 1088, 1130
Hin6I GCGC 2 cut(s) 8, 310
HinP1I GCGC 2 cut(s) 8, 310
HincII GTYRAC 2 cut(s) 70, 144
HindII GTYRAC 2 cut(s) 70, 144
HindIII AAGCTT 1 cut(s) 884
HinfI GANTC 5 cut(s) 460, 758, 949, 1136, 1160
HpaI GTTAAC 1 cut(s) 144
HpaII CCGG 2 cut(s) 61, 1051
HphI GGTGA 1 cut(s) 680
Hpy166II GTNNAC 5 cut(s) 70, 144, 178, 516, 771
Hpy188I TCNGA 6 cut(s) 306, 358, 369, 491, 970, 1141
Hpy8I GTNNAC 5 cut(s) 70, 144, 178, 516, 771
Hpy99I CGWCG 2 cut(s) 59, 861
HpyAV CCTTC 2 cut(s) 434, 646
HpyCH4III ACNGT 3 cut(s) 513, 851, 857
HpyCH4IV ACGT 2 cut(s) 57, 1195
HpyCH4V TGCA 3 cut(s) 187, 904, 931
HpyF10VI GCNNNNNNNGC 6 cut(s) 16, 28, 335, 341, 698, 1041
HpyF3I CTNAG 6 cut(s) 11, 171, 191, 357, 366, 488
HpySE526I ACGT 2 cut(s) 57, 1195
Hsp92I GRCGYC 1 cut(s) 57
Hsp92II CATG 4 cut(s) 37, 1067, 1088, 1130
HspAI GCGC 2 cut(s) 8, 310
Ksp22I TGATCA 3 cut(s) 424, 796, 868
KspAI GTTAAC 1 cut(s) 144
LmnI GCTCC 5 cut(s) 827, 988, 1037, 1074, 1151
Lsp1109I GCAGC 7 cut(s) 31, 199, 322, 563, 717, 763, 915
LweI GCATC 2 cut(s) 316, 604
MaeI CTAG 3 cut(s) 863, 1041, 1237
MaeII ACGT 2 cut(s) 57, 1195
MaeIII GTNAC 2 cut(s) 361, 851
MboII GAAGA 6 cut(s) 218, 494, 661, 719, 736, 947
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 3 cut(s) 170, 304, 469
MluCI AATT 4 cut(s) 291, 789, 1013, 1153
MluI ACGCGT 1 cut(s) 808
MlyI GAGTC 1 cut(s) 958
MseI TTAA 4 cut(s) 143, 294, 456, 1016
MspCI CTTAAG 1 cut(s) 455
MspI CCGG 2 cut(s) 61, 1051
MspR9I CCNGG 5 cut(s) 62, 248, 755, 1052, 1201
MvaI CCWGG 3 cut(s) 248, 755, 1201
MvnI CGCG 6 cut(s) 8, 810, 1035, 1047, 1122, 1183
MwoI GCNNNNNNNGC 6 cut(s) 16, 28, 335, 341, 698, 1041
NciI CCSGG 2 cut(s) 62, 1052
NheI GCTAGC 2 cut(s) 862, 1040
NlaIII CATG 4 cut(s) 37, 1067, 1088, 1130
NlaIV GGNNCC 3 cut(s) 40, 162, 591
NmuCI GTSAC 1 cut(s) 851
NruI TCGCGA 1 cut(s) 1122
PaeR7I CTCGAG 1 cut(s) 314
PagI TCATGA 2 cut(s) 1063, 1084
PcsI WCGNNNNNNNCGW 2 cut(s) 321, 1219
PfeI GAWTC 4 cut(s) 460, 758, 1136, 1160
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 2 cut(s) 60, 753
PkrI GCNGC 8 cut(s) 21, 189, 337, 553, 732, 778, 930, 1046
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 957
PpsI GAGTC 1 cut(s) 957
PpuMI RGGWCCY 1 cut(s) 661
PshBI ATTAAT 1 cut(s) 294
Psp124BI GAGCTC 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 1195
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 3 cut(s) 246, 753, 1199
PspGI CCWGG 3 cut(s) 246, 753, 1199
PspN4I GGNNCC 3 cut(s) 40, 162, 591
PspPI GGNCC 4 cut(s) 39, 161, 175, 661
PspPPI RGGWCCY 1 cut(s) 661
PspXI VCTCGAGB 1 cut(s) 314
PstI CTGCAG 1 cut(s) 933
PsuI RGATCY 1 cut(s) 451
PvuI CGATCG 1 cut(s) 88
RruI TCGCGA 1 cut(s) 1122
RsaI GTAC 2 cut(s) 770, 1235
RsaNI GTAC 2 cut(s) 769, 1234
SacI GAGCTC 1 cut(s) 304
SaqAI TTAA 4 cut(s) 143, 294, 456, 1016
SatI GCNGC 8 cut(s) 20, 188, 336, 552, 731, 777, 929, 1045
Sau96I GGNCC 4 cut(s) 39, 161, 175, 661
SchI GAGTC 1 cut(s) 958
ScrFI CCNGG 5 cut(s) 62, 248, 755, 1052, 1201
SduI GDGCHC 3 cut(s) 170, 304, 469
SfaNI GCATC 2 cut(s) 316, 604
SfcI CTRYAG 1 cut(s) 929
Sfr274I CTCGAG 1 cut(s) 314
SinI GGWCC 3 cut(s) 161, 175, 661
SlaI CTCGAG 1 cut(s) 314
SmlI CTYRAG 3 cut(s) 314, 383, 455
SmoI CTYRAG 3 cut(s) 314, 383, 455
Sse9I AATT 4 cut(s) 291, 789, 1013, 1153
SsiI CCGC 6 cut(s) 73, 879, 1035, 1045, 1150, 1183
SspMI CTAG 3 cut(s) 863, 1041, 1237
SstI GAGCTC 1 cut(s) 304
StyD4I CCNGG 5 cut(s) 60, 246, 753, 1050, 1199
StyI CCWWGG 2 cut(s) 330, 664
TaaI ACNGT 3 cut(s) 513, 851, 857
TaiI ACGT 2 cut(s) 60, 1198
TaqI TCGA 6 cut(s) 24, 315, 619, 960, 1102, 1163
TasI AATT 4 cut(s) 291, 789, 1013, 1153
TatI WGTACW 1 cut(s) 768
TauI GCSGC 1 cut(s) 1047
TfiI GAWTC 4 cut(s) 460, 758, 1136, 1160
Tru1I TTAA 4 cut(s) 143, 294, 456, 1016
Tru9I TTAA 4 cut(s) 143, 294, 456, 1016
TscAI CASTG 4 cut(s) 708, 726, 778, 856
TseFI GTSAC 1 cut(s) 851
TseI GCWGC 7 cut(s) 19, 187, 335, 551, 730, 776, 928
Tsp45I GTSAC 1 cut(s) 851
TspDTI ATGAA 2 cut(s) 654, 878
TspGWI ACGGA 2 cut(s) 153, 899
TspRI CASTG 4 cut(s) 708, 726, 778, 856
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 1 cut(s) 455
VpaK11BI GGWCC 3 cut(s) 161, 175, 661
VspI ATTAAT 1 cut(s) 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 523
XhoI CTCGAG 1 cut(s) 314
XspI CTAG 3 cut(s) 863, 1041, 1237
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.