FvH4_6g00250

RNA-binding protein Luc7-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
175140 .. 183524
8385 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g00250.t2

Sequence Viewer

Length: 1236 bp
ATGGACGCGCTGAGGAAGCAGCTGGACCAGCTCATGGGGGCGAATCGGAACGGCGACGTTCGGGAGGTGAATCGCAAATATTACGATCGCGATGTGTGTCGCCTCTACCTGGTCGGACTCTGCCCCCACGAGCTTTTCCAATTAACGAAAATGGATATGGGACCCTGCCCCAAGGTTCACTCTCTGCAACTCAGAGAAGAATACAAAGAAGCTAGGAAGCAAGGGACCGATAACTATGACAGAGACCTGGAGGATGTCATAGATAGGCTCATTGTTGAATGTGATCGGAAAATTTCTAGAGCCCTTAAGCGCCTTGAGGATGATGATGCGAAAGCCGCCATTGCAATTTCTGTCTCCGAGGTTACTCAGACACCGGAGATACTTGAGTTGTCAAAGCAGATCAAAGAGAAGCTTGAAGAAGCTGATAGATTCGATCTTGAAGGGAAGACAGATCTTAAGATTCGAGCTCTGGAGATATTAGAAGATCTCAGGGGAAAGAGAGCAGACAAACAGTCAACGCTTCTTTTGGATGCTTTCAATAAGGATAGGGCAGCTTTACCTCAACCCCTGCCAAATCCACCACCTTTGGCTCCGTTGCCTGTAGTTGTTCCTGACGCTCGTACACAGGAAATGATAAATGAAAAGTTGAAGAAGGCAGAGGACCTTGGTGAGCAAGGAATGGTTGATGAGGCGCAAAAAGCGTTGGAAGAGGCCGAAGCACTGAAAAAGTTGCCTCCCAGGCAGGAGCCTGTCCTGGATTCCTCCAAGTATACTGCTGCTGATGTGCGAATTACGGATCAAAAGCTGCGTGTCTGTGACATCTGTGGAGCATTTCTTAGTGTTTATGACAGTGATCGTCGTTTAGCTGATCATTTCGGTGGGAAACTTCATTTAGGCTATATGCAAATCCGTGAGAAGTTAGCAGAGCTGCAGGCAGAGAAAAACAAGATTCGCAAGGTTGATCGGTATGATGAAAGAAGATCAAAAGAGAGAAGCAAGGAACGTGATAGAGAACCTAGTAGGGACAGAGAACGCGGCGATAGCCGCGACCGAGGGAGGGATCTTGATCGTAGGAGCAGAGATCGAGATAGGCACTATGACCGTGATCGTGGAGAGCGTGACAGAGATTCAAACCGCTCCCGCAATTATGATTCAAGAAGTCACCGTAGGTCACGCTCTCGGTCACGGGAACGTTCCAAGGATTATGATCGCCACAGGCGTTACGACCGATACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

412

Amino Acids

48.36

Weight (kDa)

8.89

Isoelectric Point (pI)

57.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LUC7 PF03194 2 - 171 8.3e-39 LUC7 N_terminus
LUC7 PF03194 208 - 323 1.9e-30 LUC7 N_terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 1137
AccI GTMKAC 1 cut(s) 770
AccII CGCG 4 cut(s) 8, 90, 1035, 1047
AciI CCGC 5 cut(s) 336, 1035, 1045, 1135, 1141
AclI AACGTT 1 cut(s) 1192
AclWI GGATC 2 cut(s) 804, 1068
AcsI RAATTY 1 cut(s) 291
AfaI GTAC 1 cut(s) 622
AfiI CCNNNNNNNGG 3 cut(s) 34, 109, 1057
AflII CTTAAG 2 cut(s) 305, 455
AgsI TTSAA 7 cut(s) 278, 416, 440, 538, 649, 1131, 1155
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 4 cut(s) 108, 246, 737, 753
Alw21I GWGCWC 1 cut(s) 469
Alw26I GTCTC 2 cut(s) 237, 358
AlwI GGATC 2 cut(s) 804, 1068
AoxI GGCC 1 cut(s) 711
ApeKI GCWGC 5 cut(s) 19, 551, 776, 805, 928
ApoI RAATTY 1 cut(s) 291
AspLEI GCGC 3 cut(s) 10, 312, 694
AspS9I GGNCC 4 cut(s) 25, 161, 225, 661
AsuHPI GGTGA 3 cut(s) 79, 680, 1154
AvaII GGWCC 4 cut(s) 25, 161, 225, 661
BaeI ACNNNNGTAYC 2 cut(s) 371, 404
BanII GRGCYC 2 cut(s) 304, 469
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 452
Bbv12I GWGCWC 1 cut(s) 469
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 5 cut(s) 31, 563, 763, 792, 915
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 4 cut(s) 110, 248, 739, 755
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 2 cut(s) 237, 358
BfaI CTAG 4 cut(s) 213, 297, 1017, 1234
BfmI CTRYAG 2 cut(s) 600, 929
BfoI RGCGCY 1 cut(s) 313
BfrI CTTAAG 2 cut(s) 305, 455
BglI GCCNNNNNGGC 1 cut(s) 739
BglII AGATCT 2 cut(s) 451, 484
BisI GCNGC 8 cut(s) 20, 336, 552, 777, 806, 929, 1036, 1045
BlsI GCNGC 8 cut(s) 21, 337, 553, 778, 807, 930, 1037, 1046
Bme1390I CCNGG 4 cut(s) 110, 248, 739, 755
Bme18I GGWCC 4 cut(s) 25, 161, 225, 661
BmeRI GACNNNNNGTC 1 cut(s) 511
BmgT120I GGNCC 4 cut(s) 25, 161, 225, 661
BmiI GGNNCC 5 cut(s) 162, 163, 226, 591, 747
BmrFI CCNGG 4 cut(s) 110, 248, 739, 755
BmsI GCATC 2 cut(s) 316, 520
BpiI GAAGAC 1 cut(s) 452
BpmI CTGGAG 2 cut(s) 269, 491
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 2 cut(s) 335, 404
BsaBI GATNNNNATC 2 cut(s) 1065, 1206
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 6 cut(s) 171, 357, 664, 737, 1051, 1197
BsaWI WCCGGW 1 cut(s) 373
Bsc4I CCNNNNNNNGG 3 cut(s) 34, 109, 1057
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 2 cut(s) 1065, 1206
BseBI CCWGG 4 cut(s) 110, 248, 739, 755
BseDI CCNNGG 6 cut(s) 171, 357, 664, 737, 1051, 1197
BseGI GGATG 3 cut(s) 259, 325, 535
BseJI GATNNNNATC 2 cut(s) 1065, 1206
BseLI CCNNNNNNNGG 3 cut(s) 34, 109, 1057
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 205, 380, 502
BseXI GCAGC 5 cut(s) 31, 563, 763, 792, 915
Bsh1236I CGCG 4 cut(s) 8, 90, 1035, 1047
Bsh1285I CGRYCG 3 cut(s) 88, 1051, 1228
BshFI GGCC 1 cut(s) 713
BsiEI CGRYCG 3 cut(s) 88, 1051, 1228
BsiHKAI GWGCWC 1 cut(s) 469
BsiSI CCGG 1 cut(s) 374
BslFI GGGAC 3 cut(s) 174, 238, 1037
BslI CCNNNNNNNGG 3 cut(s) 34, 109, 1057
BsmAI GTCTC 2 cut(s) 237, 358
BsmFI GGGAC 3 cut(s) 174, 238, 1037
BsnI GGCC 1 cut(s) 713
Bso31I GGTCTC 1 cut(s) 237
Bsp1286I GDGCHC 2 cut(s) 304, 469
Bsp68I TCGCGA 1 cut(s) 90
BspACI CCGC 5 cut(s) 336, 1035, 1045, 1135, 1141
BspANI GGCC 1 cut(s) 713
BspCNI CTCAG 3 cut(s) 204, 379, 501
BspFNI CGCG 4 cut(s) 8, 90, 1035, 1047
BspLI GGNNCC 5 cut(s) 162, 163, 226, 591, 747
BspMAI CTGCAG 1 cut(s) 933
BspPI GGATC 2 cut(s) 804, 1068
BspTI CTTAAG 2 cut(s) 305, 455
BspTNI GGTCTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 1137
BsrDI GCAATG 1 cut(s) 339
BssECI CCNNGG 6 cut(s) 171, 357, 664, 737, 1051, 1197
BssNAI GTATAC 1 cut(s) 771
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 3 cut(s) 171, 664, 1197
Bst1107I GTATAC 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 4 cut(s) 110, 248, 739, 755
Bst4CI ACNGT 4 cut(s) 513, 851, 1103, 1166
Bst6I CTCTTC 1 cut(s) 702
BstAFI CTTAAG 2 cut(s) 305, 455
BstC8I GCNNGC 1 cut(s) 933
BstDEI CTNAG 5 cut(s) 11, 191, 366, 488, 836
BstF5I GGATG 3 cut(s) 259, 325, 535
BstFNI CGCG 4 cut(s) 8, 90, 1035, 1047
BstH2I RGCGCY 1 cut(s) 313
BstHHI GCGC 3 cut(s) 10, 312, 694
BstMAI GTCTC 2 cut(s) 237, 358
BstMCI CGRYCG 3 cut(s) 88, 1051, 1228
BstMWI GCNNNNNNNGC 8 cut(s) 16, 28, 335, 341, 698, 739, 1041, 1044
BstNI CCWGG 4 cut(s) 110, 248, 739, 755
BstSCI CCNGG 4 cut(s) 108, 246, 737, 753
BstSFI CTRYAG 2 cut(s) 600, 929
BstUI CGCG 4 cut(s) 8, 90, 1035, 1047
BstV1I GCAGC 5 cut(s) 31, 563, 763, 792, 915
BstV2I GAAGAC 1 cut(s) 452
BstX2I RGATCY 3 cut(s) 451, 484, 1060
BstYI RGATCY 3 cut(s) 451, 484, 1060
BstZ17I GTATAC 1 cut(s) 771
BsuRI GGCC 1 cut(s) 713
BtgZI GCGATG 1 cut(s) 105
BtsCI GGATG 3 cut(s) 259, 325, 535
BtsIMutI CAGTG 2 cut(s) 719, 856
BtuMI TCGCGA 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 933
CfoI GCGC 3 cut(s) 10, 312, 694
Cfr13I GGNCC 4 cut(s) 25, 161, 225, 661
CseI GACGC 2 cut(s) 14, 623
CsiI ACCWGGT 1 cut(s) 108
Csp6I GTAC 1 cut(s) 621
CspCI CAANNNNNGTGG 2 cut(s) 567, 602
CviAII CATG 1 cut(s) 34
CviQI GTAC 1 cut(s) 621
DdeI CTNAG 5 cut(s) 11, 191, 366, 488, 836
DriI GACNNNNNGTC 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 702
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 1 cut(s) 702
Ecl136II GAGCTC 1 cut(s) 467
Eco130I CCWWGG 3 cut(s) 171, 664, 1197
Eco24I GRGCYC 2 cut(s) 304, 469
Eco31I GGTCTC 1 cut(s) 237
Eco47I GGWCC 4 cut(s) 25, 161, 225, 661
Eco53kI GAGCTC 1 cut(s) 467
EcoICRI GAGCTC 1 cut(s) 467
EcoO109I RGGNCCY 2 cut(s) 161, 661
EcoRII CCWGG 4 cut(s) 108, 246, 737, 753
EcoT14I CCWWGG 3 cut(s) 171, 664, 1197
EcoT38I GRGCYC 2 cut(s) 304, 469
ErhI CCWWGG 3 cut(s) 171, 664, 1197
FaeI CATG 1 cut(s) 37
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FaqI GGGAC 3 cut(s) 174, 238, 1037
FatI CATG 1 cut(s) 33
FauI CCCGC 1 cut(s) 1148
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 8 cut(s) 20, 336, 552, 777, 806, 929, 1036, 1045
FokI GGATG 3 cut(s) 266, 332, 542
FriOI GRGCYC 2 cut(s) 304, 469
Fsp4HI GCNGC 8 cut(s) 20, 336, 552, 777, 806, 929, 1036, 1045
FspBI CTAG 4 cut(s) 213, 297, 1017, 1234
GlaI GCGC 3 cut(s) 9, 311, 693
GluI GCNGC 8 cut(s) 20, 336, 552, 777, 806, 929, 1036, 1045
GsuI CTGGAG 2 cut(s) 269, 491
HaeII RGCGCY 1 cut(s) 313
HaeIII GGCC 1 cut(s) 713
HapII CCGG 1 cut(s) 374
HgaI GACGC 2 cut(s) 14, 623
HhaI GCGC 3 cut(s) 10, 312, 694
Hin1II CATG 1 cut(s) 37
Hin6I GCGC 3 cut(s) 8, 310, 692
HinP1I GCGC 3 cut(s) 8, 310, 692
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 9 cut(s) 43, 70, 117, 429, 460, 758, 949, 1127, 1151
HpaII CCGG 1 cut(s) 374
HphI GGTGA 3 cut(s) 79, 680, 1154
Hpy166II GTNNAC 4 cut(s) 178, 516, 623, 771
Hpy188I TCNGA 6 cut(s) 48, 116, 194, 288, 358, 369
Hpy188III TCNNGA 9 cut(s) 62, 89, 297, 437, 470, 611, 1064, 1085, 1155
Hpy8I GTNNAC 4 cut(s) 178, 516, 623, 771
Hpy99I CGWCG 2 cut(s) 59, 861
HpyAV CCTTC 2 cut(s) 434, 646
HpyCH4III ACNGT 4 cut(s) 513, 851, 1103, 1166
HpyCH4IV ACGT 3 cut(s) 57, 1003, 1192
HpyCH4V TGCA 4 cut(s) 187, 344, 904, 931
HpyF10VI GCNNNNNNNGC 8 cut(s) 16, 28, 335, 341, 698, 739, 1041, 1044
HpyF3I CTNAG 5 cut(s) 11, 191, 366, 488, 836
HpySE526I ACGT 3 cut(s) 57, 1003, 1192
Hsp92II CATG 1 cut(s) 37
HspAI GCGC 3 cut(s) 8, 310, 692
KflI GGGWCCC 1 cut(s) 161
Ksp22I TGATCA 1 cut(s) 868
LmnI GCTCC 5 cut(s) 595, 745, 827, 1074, 1142
Lsp1109I GCAGC 5 cut(s) 31, 563, 763, 792, 915
LweI GCATC 2 cut(s) 316, 520
MabI ACCWGGT 1 cut(s) 108
MaeI CTAG 4 cut(s) 213, 297, 1017, 1234
MaeII ACGT 3 cut(s) 57, 1003, 1192
MaeIII GTNAC 7 cut(s) 361, 815, 1118, 1160, 1170, 1182, 1220
MbiI CCGCTC 1 cut(s) 1137
MboII GAAGA 7 cut(s) 209, 428, 457, 494, 661, 719, 990
MflI RGATCY 3 cut(s) 451, 484, 1060
MhlI GDGCHC 2 cut(s) 304, 469
MluCI AATT 5 cut(s) 140, 291, 345, 789, 1144
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 2 cut(s) 94, 684
MseI TTAA 3 cut(s) 143, 306, 456
MslI CAYNNNNRTG 1 cut(s) 876
MspA1I CMGCKG 1 cut(s) 22
MspCI CTTAAG 2 cut(s) 305, 455
MspI CCGG 1 cut(s) 374
MspR9I CCNGG 4 cut(s) 110, 248, 739, 755
MvaI CCWGG 4 cut(s) 110, 248, 739, 755
MvnI CGCG 4 cut(s) 8, 90, 1035, 1047
MwoI GCNNNNNNNGC 8 cut(s) 16, 28, 335, 341, 698, 739, 1041, 1044
NlaIII CATG 1 cut(s) 37
NlaIV GGNNCC 5 cut(s) 162, 163, 226, 591, 747
NmuCI GTSAC 5 cut(s) 815, 1118, 1160, 1170, 1182
NruI TCGCGA 1 cut(s) 90
PcsI WCGNNNNNNNCGW 2 cut(s) 1114, 1216
PfeI GAWTC 8 cut(s) 43, 70, 429, 460, 758, 949, 1127, 1151
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 753
PkrI GCNGC 8 cut(s) 21, 337, 553, 778, 807, 930, 1037, 1046
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PpuMI RGGWCCY 2 cut(s) 161, 661
Psp124BI GAGCTC 1 cut(s) 469
Psp1406I AACGTT 1 cut(s) 1192
Psp5II RGGWCCY 2 cut(s) 161, 661
Psp6I CCWGG 4 cut(s) 108, 246, 737, 753
PspGI CCWGG 4 cut(s) 108, 246, 737, 753
PspN4I GGNNCC 5 cut(s) 162, 163, 226, 591, 747
PspPI GGNCC 4 cut(s) 25, 161, 225, 661
PspPPI RGGWCCY 2 cut(s) 161, 661
PstI CTGCAG 1 cut(s) 933
PsuI RGATCY 3 cut(s) 451, 484, 1060
PvuI CGATCG 1 cut(s) 88
PvuII CAGCTG 1 cut(s) 22
RruI TCGCGA 1 cut(s) 90
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
RseI CAYNNNNRTG 1 cut(s) 876
SacI GAGCTC 1 cut(s) 469
SaqAI TTAA 3 cut(s) 143, 306, 456
SatI GCNGC 8 cut(s) 20, 336, 552, 777, 806, 929, 1036, 1045
Sau96I GGNCC 4 cut(s) 25, 161, 225, 661
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 4 cut(s) 110, 248, 739, 755
SduI GDGCHC 2 cut(s) 304, 469
SexAI ACCWGGT 1 cut(s) 108
SfaNI GCATC 2 cut(s) 316, 520
SfcI CTRYAG 2 cut(s) 600, 929
SinI GGWCC 4 cut(s) 25, 161, 225, 661
SmiMI CAYNNNNRTG 1 cut(s) 876
SmlI CTYRAG 4 cut(s) 305, 314, 383, 455
SmoI CTYRAG 4 cut(s) 305, 314, 383, 455
Sse9I AATT 5 cut(s) 140, 291, 345, 789, 1144
SsiI CCGC 5 cut(s) 336, 1035, 1045, 1135, 1141
SspI AATATT 1 cut(s) 80
SspMI CTAG 4 cut(s) 213, 297, 1017, 1234
SstI GAGCTC 1 cut(s) 469
StyD4I CCNGG 4 cut(s) 108, 246, 737, 753
StyI CCWWGG 3 cut(s) 171, 664, 1197
TaaI ACNGT 4 cut(s) 513, 851, 1103, 1166
TaiI ACGT 3 cut(s) 60, 1006, 1195
TaqI TCGA 3 cut(s) 432, 463, 1084
TaqII GACCGA 3 cut(s) 242, 1065, 1170
TasI AATT 5 cut(s) 140, 291, 345, 789, 1144
TauI GCSGC 3 cut(s) 338, 1038, 1047
TfiI GAWTC 8 cut(s) 43, 70, 429, 460, 758, 949, 1127, 1151
Tru1I TTAA 3 cut(s) 143, 306, 456
Tru9I TTAA 3 cut(s) 143, 306, 456
TscAI CASTG 2 cut(s) 726, 856
TseFI GTSAC 5 cut(s) 815, 1118, 1160, 1170, 1182
TseI GCWGC 5 cut(s) 19, 551, 776, 805, 928
Tsp45I GTSAC 5 cut(s) 815, 1118, 1160, 1170, 1182
TspDTI ATGAA 3 cut(s) 654, 878, 987
TspGWI ACGGA 3 cut(s) 582, 809, 899
TspRI CASTG 2 cut(s) 726, 856
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 2 cut(s) 305, 455
VpaK11BI GGWCC 4 cut(s) 25, 161, 225, 661
XapI RAATTY 1 cut(s) 291
XbaI TCTAGA 1 cut(s) 296
XmiI GTMKAC 1 cut(s) 770
XspI CTAG 4 cut(s) 213, 297, 1017, 1234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.