pycom04g21750

RNA-binding protein Luc7-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0007777
Physical Location & Seq
Reverse (-)
22768328 .. 22772887
4560 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21750.6

Sequence Viewer

Length: 1203 bp
ATGGACGCGCTGAGGAAGCAGCTCGACCAGCTCATGGGCGCCAACCGAAACGGCGACGTCCGGGAGGTCAACCGCAAGTATTACGATCGTGATGTGTGTCGCCTCTACTTGGTCGGCCTCTGCCCCCACGAGCTTTTCCAGTTAACGAAAATGGATATGGGTCCGTGCCCTAAGGTCCACTCTTTGCAGCTCAGGAAAGAAGACCTGGAGGATGTCATAGATAGGCTCATTGTTGAGTGTGATAGGAAAATTACTAGAGCTCTTAAGCGCCTCGAGGATGACGATGCCAAGGCTGCTATTGCCATTTCTGTCTCTGAGGTTACTCAGACACCAGAGATACTTGAGTTATCAAAGCAGATCAAGGAGAAGTTGAAAGAAGTCGATCAATATGATCTTGAAGGCAAGACAGATCTTAAGATTCGGGCTCTGGAGATTGTAGAAGAACTCAGAGGCAGTAGAGCAGATAAACAGTCCACATTACTTTTGGATGCTTTCAATAAGGATCGGGCAGCTTTACCCCAACCCCTACCAAATCCACCTCCTTTGGCACCATTGCCTGTAGTTGTTCCTGATGCTCGAACACAGGAAATGATAAATGAAAAGTTGAAGAAGGCAGAGGACCTTGGTGAGCAAGGTATGGTTGATGAGGCACAAAAAGCACTGGAAGAGGCTGAAGCGCTGAAGAAGCTGCCTGCGAGACAAGAGCCTATCCTGGATTCCTCCAAGTACACTGCTGCTGATGTGCGAATTACTGATCAAAAGCTACGCGTGTGTGATATCTGTGGAGCTTTTTTGAGTGTTTATGACAGTGACCGTCGGCTAGCTGATCACTTTGGCGGGAAGCTTCATTTAGGCTATATGCAAATCCGTGAGAAGTTAGCAGAGCTGCAGGAAGAGAGAAACAAGAGTCGTAAGGTCGATAGGACTGATGATAGGAGATCAAAGGAGCGAAGTAAGGAACGTGACAAGGAATCAAGTAGGGATAGAGAACGCGGAGCTAGCCGCGACCGGGGTAGGGATCATGATCGTAGGAGCAGAGATCATGATAGGTACTATGATCGAGATCGCAGATATGATCGCGAGCGTGACAGAGATTCAGAGCGCTCCCGCAATTATGATTCAAGAAGTTGCCGCAGGTCACGGTCGCGGTCAAGGGAACATTCCAGGGATTATGATCGCCACAGGCGTTATGATCGGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LUC7

Protein Analysis

401

Amino Acids

47.07

Weight (kDa)

8.76

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 60
AbsI CCTCGAGG 1 cut(s) 272
Acc36I ACCTGC 1 cut(s) 1125
AccB1I GGYRCC 2 cut(s) 38, 547
AccB7I CCANNNNNTGG 1 cut(s) 34
AccII CGCG 6 cut(s) 8, 768, 993, 1005, 1080, 1147
AciI CCGC 7 cut(s) 73, 837, 993, 1003, 1108, 1132, 1147
AclWI GGATC 2 cut(s) 510, 1026
AcuI CTGAAG 2 cut(s) 693, 701
AcyI GRCGYC 2 cut(s) 39, 57
AfaI GTAC 3 cut(s) 728, 1052, 1199
AfeI AGCGCT 2 cut(s) 678, 1103
AfiI CCNNNNNNNGG 4 cut(s) 34, 109, 1009, 1015
AflII CTTAAG 2 cut(s) 263, 413
AflIII ACRYGT 1 cut(s) 766
AgsI TTSAA 5 cut(s) 373, 398, 496, 607, 1122
AjnI CCWGG 3 cut(s) 204, 711, 1163
Alw21I GWGCWC 1 cut(s) 262
Alw26I GTCTC 2 cut(s) 316, 691
AlwI GGATC 2 cut(s) 510, 1026
Ama87I CYCGRG 1 cut(s) 272
Aor51HI AGCGCT 2 cut(s) 678, 1103
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 7 cut(s) 19, 187, 293, 509, 688, 734, 886
AspLEI GCGC 5 cut(s) 10, 41, 270, 679, 1104
AspS9I GGNCC 3 cut(s) 161, 175, 619
AsuC2I CCSGG 2 cut(s) 62, 1010
AsuHPI GGTGA 1 cut(s) 638
AsuNHI GCTAGC 2 cut(s) 820, 998
AvaI CYCGRG 1 cut(s) 272
AvaII GGWCC 3 cut(s) 161, 175, 619
AxyI CCTNAGG 1 cut(s) 171
BaeGI GKGCMC 1 cut(s) 170
BaeI ACNNNNGTAYC 2 cut(s) 329, 362
BanI GGYRCC 2 cut(s) 38, 547
BanII GRGCYC 2 cut(s) 262, 427
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 11
BbvI GCAGC 7 cut(s) 31, 199, 280, 521, 675, 721, 873
BceAI ACGGC 1 cut(s) 67
BciT130I CCWGG 3 cut(s) 206, 713, 1165
BclI TGATCA 2 cut(s) 754, 826
BcnI CCSGG 2 cut(s) 62, 1010
BcoDI GTCTC 2 cut(s) 316, 691
BfaI CTAG 4 cut(s) 255, 821, 999, 1201
BfmI CTRYAG 2 cut(s) 558, 887
BfoI RGCGCY 4 cut(s) 42, 271, 680, 1105
BfrI CTTAAG 2 cut(s) 263, 413
BfuAI ACCTGC 1 cut(s) 1125
BglII AGATCT 1 cut(s) 409
BisI GCNGC 9 cut(s) 20, 188, 294, 510, 689, 735, 887, 1003, 1132
BlsI GCNGC 9 cut(s) 21, 189, 295, 511, 690, 736, 888, 1004, 1133
Bme1390I CCNGG 5 cut(s) 62, 206, 713, 1010, 1165
Bme18I GGWCC 3 cut(s) 161, 175, 619
BmeT110I CYCGRG 1 cut(s) 272
BmgT120I GGNCC 3 cut(s) 161, 175, 619
BmiI GGNNCC 3 cut(s) 40, 162, 549
BmrFI CCNGG 5 cut(s) 62, 206, 713, 1010, 1165
BmsI GCATC 3 cut(s) 274, 478, 562
BmtI GCTAGC 2 cut(s) 824, 1002
BpiI GAAGAC 1 cut(s) 207
BpmI CTGGAG 2 cut(s) 227, 449
Bpu10I CCTNAGC 2 cut(s) 11, 191
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 62, 1010
BsaBI GATNNNNATC 3 cut(s) 1023, 1062, 1173
BsaHI GRCGYC 2 cut(s) 39, 57
BsaJI CCNNGG 4 cut(s) 288, 622, 1009, 1164
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 109, 1009, 1015
Bse1I ACTGG 2 cut(s) 139, 666
Bse21I CCTNAGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 551
Bse8I GATNNNNATC 3 cut(s) 1023, 1062, 1173
BseBI CCWGG 3 cut(s) 206, 713, 1165
BseDI CCNNGG 4 cut(s) 288, 622, 1009, 1164
BseGI GGATG 3 cut(s) 217, 283, 493
BseJI GATNNNNATC 3 cut(s) 1023, 1062, 1173
BseLI CCNNNNNNNGG 4 cut(s) 34, 109, 1009, 1015
BseMI GCAATG 1 cut(s) 551
BseMII CTCAG 4 cut(s) 205, 306, 338, 460
BseNI ACTGG 2 cut(s) 139, 666
BseSI GKGCMC 1 cut(s) 170
BseXI GCAGC 7 cut(s) 31, 199, 280, 521, 675, 721, 873
Bsh1236I CGCG 6 cut(s) 8, 768, 993, 1005, 1080, 1147
Bsh1285I CGRYCG 3 cut(s) 88, 1009, 1145
BshFI GGCC 1 cut(s) 117
BshNI GGYRCC 2 cut(s) 38, 547
BsiEI CGRYCG 3 cut(s) 88, 1009, 1145
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 272
BsiSI CCGG 2 cut(s) 61, 1009
BslI CCNNNNNNNGG 4 cut(s) 34, 109, 1009, 1015
BsmAI GTCTC 2 cut(s) 316, 691
BsnI GGCC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 272
Bsp1286I GDGCHC 3 cut(s) 170, 262, 427
Bsp68I TCGCGA 1 cut(s) 1080
BspACI CCGC 7 cut(s) 73, 837, 993, 1003, 1108, 1132, 1147
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 4 cut(s) 204, 307, 337, 459
BspFNI CGCG 6 cut(s) 8, 768, 993, 1005, 1080, 1147
BspHI TCATGA 2 cut(s) 1021, 1042
BspLI GGNNCC 3 cut(s) 40, 162, 549
BspMAI CTGCAG 1 cut(s) 891
BspMI ACCTGC 1 cut(s) 1125
BspOI GCTAGC 2 cut(s) 824, 1002
BspPI GGATC 2 cut(s) 510, 1026
BspT107I GGYRCC 2 cut(s) 38, 547
BspTI CTTAAG 2 cut(s) 263, 413
BsrDI GCAATG 1 cut(s) 551
BsrI ACTGG 2 cut(s) 139, 666
BssECI CCNNGG 4 cut(s) 288, 622, 1009, 1164
BssNI GRCGYC 2 cut(s) 39, 57
BssSI CACGAG 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 288, 622
Bst2BI CACGAG 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 206, 713, 1165
Bst4CI ACNGT 4 cut(s) 471, 809, 815, 1143
Bst6I CTCTTC 2 cut(s) 660, 888
BstACI GRCGYC 2 cut(s) 39, 57
BstAFI CTTAAG 2 cut(s) 263, 413
BstC8I GCNNGC 4 cut(s) 693, 822, 1000, 1082
BstDEI CTNAG 6 cut(s) 11, 171, 191, 315, 324, 446
BstF5I GGATG 3 cut(s) 217, 283, 493
BstFNI CGCG 6 cut(s) 8, 768, 993, 1005, 1080, 1147
BstH2I RGCGCY 4 cut(s) 42, 271, 680, 1105
BstHHI GCGC 5 cut(s) 10, 41, 270, 679, 1104
BstMAI GTCTC 2 cut(s) 316, 691
BstMCI CGRYCG 3 cut(s) 88, 1009, 1145
BstMWI GCNNNNNNNGC 7 cut(s) 16, 28, 293, 299, 656, 685, 999
BstNI CCWGG 3 cut(s) 206, 713, 1165
BstSCI CCNGG 5 cut(s) 60, 204, 711, 1008, 1163
BstSFI CTRYAG 2 cut(s) 558, 887
BstSLI GKGCMC 1 cut(s) 170
BstUI CGCG 6 cut(s) 8, 768, 993, 1005, 1080, 1147
BstV1I GCAGC 7 cut(s) 31, 199, 280, 521, 675, 721, 873
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
Bsu36I CCTNAGG 1 cut(s) 171
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 3 cut(s) 217, 283, 493
BtsI GCAGTG 1 cut(s) 729
BtsIMutI CAGTG 3 cut(s) 659, 729, 814
BtuMI TCGCGA 1 cut(s) 1080
BveI ACCTGC 1 cut(s) 1125
Cac8I GCNNGC 4 cut(s) 693, 822, 1000, 1082
CciI TCATGA 2 cut(s) 1021, 1042
CfoI GCGC 5 cut(s) 10, 41, 270, 679, 1104
Cfr13I GGNCC 3 cut(s) 161, 175, 619
CseI GACGC 1 cut(s) 14
Csp6I GTAC 3 cut(s) 727, 1051, 1198
CspCI CAANNNNNGTGG 2 cut(s) 525, 560
CviAII CATG 3 cut(s) 34, 1022, 1043
CviQI GTAC 3 cut(s) 727, 1051, 1198
DdeI CTNAG 6 cut(s) 11, 171, 191, 315, 324, 446
DinI GGCGCC 1 cut(s) 40
Eam1104I CTCTTC 2 cut(s) 660, 888
EarI CTCTTC 2 cut(s) 660, 888
Ecl136II GAGCTC 1 cut(s) 260
Eco130I CCWWGG 2 cut(s) 288, 622
Eco24I GRGCYC 2 cut(s) 262, 427
Eco32I GATATC 1 cut(s) 778
Eco47I GGWCC 3 cut(s) 161, 175, 619
Eco47III AGCGCT 2 cut(s) 678, 1103
Eco53kI GAGCTC 1 cut(s) 260
Eco57I CTGAAG 2 cut(s) 693, 701
Eco81I CCTNAGG 1 cut(s) 171
Eco88I CYCGRG 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 619
EcoRII CCWGG 3 cut(s) 204, 711, 1163
EcoRV GATATC 1 cut(s) 778
EcoT14I CCWWGG 2 cut(s) 288, 622
EcoT38I GRGCYC 2 cut(s) 262, 427
EgeI GGCGCC 1 cut(s) 40
EheI GGCGCC 1 cut(s) 40
ErhI CCWWGG 2 cut(s) 288, 622
FaeI CATG 3 cut(s) 37, 1025, 1046
FatI CATG 3 cut(s) 33, 1021, 1042
FauI CCCGC 2 cut(s) 830, 1115
FbaI TGATCA 2 cut(s) 754, 826
Fnu4HI GCNGC 9 cut(s) 20, 188, 294, 510, 689, 735, 887, 1003, 1132
FokI GGATG 3 cut(s) 224, 290, 500
FriOI GRGCYC 2 cut(s) 262, 427
Fsp4HI GCNGC 9 cut(s) 20, 188, 294, 510, 689, 735, 887, 1003, 1132
FspBI CTAG 4 cut(s) 255, 821, 999, 1201
GlaI GCGC 5 cut(s) 9, 40, 269, 678, 1103
GluI GCNGC 9 cut(s) 20, 188, 294, 510, 689, 735, 887, 1003, 1132
GsuI CTGGAG 2 cut(s) 227, 449
HaeII RGCGCY 4 cut(s) 42, 271, 680, 1105
HaeIII GGCC 1 cut(s) 117
HapII CCGG 2 cut(s) 61, 1009
HgaI GACGC 1 cut(s) 14
HhaI GCGC 5 cut(s) 10, 41, 270, 679, 1104
Hin1I GRCGYC 2 cut(s) 39, 57
Hin1II CATG 3 cut(s) 37, 1025, 1046
Hin6I GCGC 5 cut(s) 8, 39, 268, 677, 1102
HinP1I GCGC 5 cut(s) 8, 39, 268, 677, 1102
HincII GTYRAC 2 cut(s) 70, 144
HindII GTYRAC 2 cut(s) 70, 144
HindIII AAGCTT 1 cut(s) 842
HinfI GANTC 6 cut(s) 418, 716, 907, 971, 1094, 1118
HpaI GTTAAC 1 cut(s) 144
HpaII CCGG 2 cut(s) 61, 1009
HphI GGTGA 1 cut(s) 638
Hpy166II GTNNAC 5 cut(s) 70, 144, 178, 474, 729
Hpy188I TCNGA 4 cut(s) 316, 327, 449, 1099
Hpy8I GTNNAC 5 cut(s) 70, 144, 178, 474, 729
Hpy99I CGWCG 2 cut(s) 59, 819
HpyAV CCTTC 2 cut(s) 392, 604
HpyCH4III ACNGT 4 cut(s) 471, 809, 815, 1143
HpyCH4IV ACGT 2 cut(s) 57, 961
HpyCH4V TGCA 3 cut(s) 187, 862, 889
HpyF10VI GCNNNNNNNGC 7 cut(s) 16, 28, 293, 299, 656, 685, 999
HpyF3I CTNAG 6 cut(s) 11, 171, 191, 315, 324, 446
HpySE526I ACGT 2 cut(s) 57, 961
Hsp92I GRCGYC 2 cut(s) 39, 57
Hsp92II CATG 3 cut(s) 37, 1025, 1046
HspAI GCGC 5 cut(s) 8, 39, 268, 677, 1102
KasI GGCGCC 1 cut(s) 38
Ksp22I TGATCA 2 cut(s) 754, 826
KspAI GTTAAC 1 cut(s) 144
LmnI GCTCC 5 cut(s) 785, 946, 995, 1032, 1109
Lsp1109I GCAGC 7 cut(s) 31, 199, 280, 521, 675, 721, 873
LweI GCATC 3 cut(s) 274, 478, 562
MaeI CTAG 4 cut(s) 255, 821, 999, 1201
MaeII ACGT 2 cut(s) 57, 961
MaeIII GTNAC 5 cut(s) 319, 809, 962, 1085, 1137
MboII GAAGA 6 cut(s) 212, 452, 619, 677, 694, 905
MflI RGATCY 1 cut(s) 409
MhlI GDGCHC 3 cut(s) 170, 262, 427
MluCI AATT 3 cut(s) 249, 747, 1111
MluI ACGCGT 1 cut(s) 766
Mly113I GGCGCC 1 cut(s) 39
MlyI GAGTC 1 cut(s) 916
MseI TTAA 3 cut(s) 143, 264, 414
MspCI CTTAAG 2 cut(s) 263, 413
MspI CCGG 2 cut(s) 61, 1009
MspR9I CCNGG 5 cut(s) 62, 206, 713, 1010, 1165
MvaI CCWGG 3 cut(s) 206, 713, 1165
MvnI CGCG 6 cut(s) 8, 768, 993, 1005, 1080, 1147
MwoI GCNNNNNNNGC 7 cut(s) 16, 28, 293, 299, 656, 685, 999
NarI GGCGCC 1 cut(s) 39
NciI CCSGG 2 cut(s) 62, 1010
NheI GCTAGC 2 cut(s) 820, 998
NlaIII CATG 3 cut(s) 37, 1025, 1046
NlaIV GGNNCC 3 cut(s) 40, 162, 549
NmuCI GTSAC 4 cut(s) 809, 962, 1085, 1137
NruI TCGCGA 1 cut(s) 1080
PaeR7I CTCGAG 1 cut(s) 272
PagI TCATGA 2 cut(s) 1021, 1042
PcsI WCGNNNNNNNCGW 2 cut(s) 279, 1183
PfeI GAWTC 5 cut(s) 418, 716, 971, 1094, 1118
PflMI CCANNNNNTGG 1 cut(s) 34
PfoI TCCNGGA 2 cut(s) 60, 711
PkrI GCNGC 9 cut(s) 21, 189, 295, 511, 690, 736, 888, 1004, 1133
Ple19I CGATCG 1 cut(s) 88
PleI GAGTC 1 cut(s) 915
PluTI GGCGCC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 915
PpuMI RGGWCCY 1 cut(s) 619
Psp124BI GAGCTC 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 619
Psp6I CCWGG 3 cut(s) 204, 711, 1163
PspGI CCWGG 3 cut(s) 204, 711, 1163
PspN4I GGNNCC 3 cut(s) 40, 162, 549
PspPI GGNCC 3 cut(s) 161, 175, 619
PspPPI RGGWCCY 1 cut(s) 619
PspXI VCTCGAGB 1 cut(s) 272
PstI CTGCAG 1 cut(s) 891
PsuI RGATCY 1 cut(s) 409
PvuI CGATCG 1 cut(s) 88
RruI TCGCGA 1 cut(s) 1080
RsaI GTAC 3 cut(s) 728, 1052, 1199
RsaNI GTAC 3 cut(s) 727, 1051, 1198
SacI GAGCTC 1 cut(s) 262
SaqAI TTAA 3 cut(s) 143, 264, 414
SatI GCNGC 9 cut(s) 20, 188, 294, 510, 689, 735, 887, 1003, 1132
Sau96I GGNCC 3 cut(s) 161, 175, 619
SchI GAGTC 1 cut(s) 916
ScrFI CCNGG 5 cut(s) 62, 206, 713, 1010, 1165
SduI GDGCHC 3 cut(s) 170, 262, 427
SfaNI GCATC 3 cut(s) 274, 478, 562
SfcI CTRYAG 2 cut(s) 558, 887
SfoI GGCGCC 1 cut(s) 40
Sfr274I CTCGAG 1 cut(s) 272
SinI GGWCC 3 cut(s) 161, 175, 619
SlaI CTCGAG 1 cut(s) 272
SmlI CTYRAG 4 cut(s) 263, 272, 341, 413
SmoI CTYRAG 4 cut(s) 263, 272, 341, 413
Sse9I AATT 3 cut(s) 249, 747, 1111
SsiI CCGC 7 cut(s) 73, 837, 993, 1003, 1108, 1132, 1147
SspDI GGCGCC 1 cut(s) 38
SspMI CTAG 4 cut(s) 255, 821, 999, 1201
SstI GAGCTC 1 cut(s) 262
StyD4I CCNGG 5 cut(s) 60, 204, 711, 1008, 1163
StyI CCWWGG 2 cut(s) 288, 622
TaaI ACNGT 4 cut(s) 471, 809, 815, 1143
TaiI ACGT 2 cut(s) 60, 964
TaqI TCGA 6 cut(s) 24, 273, 381, 577, 918, 1060
TasI AATT 3 cut(s) 249, 747, 1111
TatI WGTACW 1 cut(s) 726
TauI GCSGC 2 cut(s) 1005, 1134
TfiI GAWTC 5 cut(s) 418, 716, 971, 1094, 1118
Tru1I TTAA 3 cut(s) 143, 264, 414
Tru9I TTAA 3 cut(s) 143, 264, 414
TscAI CASTG 3 cut(s) 666, 736, 814
TseFI GTSAC 4 cut(s) 809, 962, 1085, 1137
TseI GCWGC 7 cut(s) 19, 187, 293, 509, 688, 734, 886
Tsp45I GTSAC 4 cut(s) 809, 962, 1085, 1137
TspDTI ATGAA 2 cut(s) 612, 836
TspGWI ACGGA 2 cut(s) 153, 857
TspRI CASTG 3 cut(s) 666, 736, 814
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 2 cut(s) 263, 413
VpaK11BI GGWCC 3 cut(s) 161, 175, 619
XcmI CCANNNNNNNNNTGG 1 cut(s) 481
XhoI CTCGAG 1 cut(s) 272
XspI CTAG 4 cut(s) 255, 821, 999, 1201
ZraI GACGTC 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.