Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007108

Physical Location & Seq

Genomic Coordinates Reverse (-)

936878 .. 941670

Gene Structure 4793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGAAATCTGTCATTTTCACAGAGGAAAAAAACTTACAAAGACAAAATCCATTGCAAAAGAGCGAGCAACAACGACGAAATTTCGAAATGCCATCGCCACCGACGACGACTTCTCTCTCGGTGACACAGACCATAAACGGATCACACAGCTTCACAATCAAAGGCTATTCTTTGGCTAAAGGAATCGGGATCGGAAAACACATCGCCAGCGATACTTTCACCGTCGGGGGTTATCAATGGGCTATCTATTTCTATCCTGATGGCAAGAATCCTGAGGATAATTCGGCTTATGTCTCCGTTTTCATTGCTTTAGCTAGCGATGGTACCGATGTTAGGGCTCTTTTTGAGCTTTCTTTGCTTGATCAGAGTGGTAAAGGGAAGCATAAGGTTCATAGCCACTTCGATCGTGCTCTTGAGAGCGGTCCTTATACTCTCAAGTATCGTGGCAGCATGTGGGGCTACAAGCGCTTTTTTCGAAGACTTATGCTGGAAACATCTGATTTTCTGAAGGATGATTGTCTGAAAATTAATTGCACCGTGGGAGTTGTGGTCTCAGAAATAGATTGCCCACGGTTACATTCTATTCATGTCCCTGCATCTGATATTGGATCTCATTTCGGGATGCTTCTAGAGAACGAGGACGGTTCAGATATAACTTTTAACGTCTCTGGTGAAAAGTTCCGTGCTCACAGGTTAGTATTGGCTGCTCGATCTCCTGTCTTTGAAAGCGAGTTCCTCGATGTTACGGGAGAAGAAGATCGTGATATCGAAGTTACTGACATGGAGCCTAAGGTTTTCAAGGCTTTGCTCCACTACATATACAAGGATGCTCTCATTGAAGATGCAGAGTCATCATCATCTTCCGGTTCATCTGTTGGTCCATCTGCCTCAGACACATTAGCTGCAAAGCTACTAGGAGCCGCTGATAAATACAAGTTGCCTAGATTAAGTCTAATGTGCGAGTCAGTGCTCTGCAAGGATATATCAGTAGATTCCGTTGCAAATATTTTGGCGCTTGCTGACCGTTACAATGCTTCCGCCTTGAAATCCGTTTGTCTGAAATTCGCAGCAGAAAATCTCATCGCTGTTATGAGGTCAGATGGGTTTGATTATCTAAGGGAACACTGCCCGTCACTTCAGTCTGAGCTTCTGAAAACAGTTGCGGGTTGCGAAGAGGAGTTAAGCGGAGGAGGAGGGAAGACGAGAAGCGTATGGGGCCAATTCTCAGACGGTGGAGCTGAGACAAACGGAAGACAAGCACAGACTTGGGGAGATATCAATGGAGGAGCAGAGAGAAGCCAGAGTGTTTGGGTCGAAGTTGTGAACGCTAATGGAAGCGGTAGAAACAATAATGACAACAATAACAGTGATGACCCAATGGCAGAACTAGAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB MATH

Protein Analysis

465

Amino Acids

51.0

Weight (kDa)

5.18

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	48 - 180	9.6e-31	MATH domain
BTB	PF00651	208 - 326	8.7e-21	BTB/POZ domain
BACK_BPM_SPOP	PF24570	332 - 384	4.8e-17	BPM/SPOP, BACK domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03740 AT3G43700 AT3G43700 AT3G43700 AT5G21010
fragaria_vesca	FvH4_1g28561 FvH4_1g28561 FvH4_1g28561
malus_domestica	MD12G1010200.v1.1 MD14G1007300.v1.1
prunus_persica	Prupe.7G012100_v2.0.a1
pyrus_communis	pycom12g00790 pycom14g00590 pycom14g00600
rosa_chinensis	RchiOBHm_Chr3g0496191
rosa_laevigata	RLG00000022553
rosa_multiflora	Rmu_co8262413.1_g000001 Rmu_sc0006695.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389480
rosa_rugosa	Rorug03G0280400
rosa_samantha	Rh3AG327200 Rh3BG363400 Rh3CG360100 Rh3DG363300
rosa_wichuraiana	Rw3G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	323
AccB1I	GGYRCC	1 cut(s)	323
AccBSI	CCGCTC	1 cut(s)	420
AciI	CCGC	6 cut(s)	420, 921, 1038, 1163, 1185, 1338
AclWI	GGATC	3 cut(s)	148, 197, 616
AcsI	RAATTY	2 cut(s)	79, 1061
AcuI	CTGAAG	2 cut(s)	527, 1121
AfaI	GTAC	1 cut(s)	325
AfeI	AGCGCT	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	333
AgsI	TTSAA	4 cut(s)	725, 799, 839, 1045
AluBI	AGCT	7 cut(s)	150, 314, 349, 902, 910, 1147, 1238
AluI	AGCT	7 cut(s)	150, 314, 349, 902, 910, 1147, 1238
Alw21I	GWGCWC	3 cut(s)	412, 688, 972
Alw26I	GTCTC	4 cut(s)	298, 556, 670, 1235
AlwI	GGATC	3 cut(s)	148, 197, 616
Aor51HI	AGCGCT	1 cut(s)	467
AoxI	GGCC	1 cut(s)	1216
ApeKI	GCWGC	4 cut(s)	447, 704, 902, 1067
ApoI	RAATTY	2 cut(s)	79, 1061
AseI	ATTAAT	1 cut(s)	528
Asp718I	GGTACC	1 cut(s)	323
AspLEI	GCGC	2 cut(s)	468, 1015
AspS9I	GGNCC	3 cut(s)	422, 878, 1216
AsuHPI	GGTGA	3 cut(s)	133, 211, 683
AsuII	TTCGAA	2 cut(s)	84, 475
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	2 cut(s)	422, 878
AxyI	CCTNAGG	2 cut(s)	273, 789
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BanI	GGYRCC	1 cut(s)	323
BanII	GRGCYC	1 cut(s)	340
BbsI	GAAGAC	3 cut(s)	484, 1205, 1258
Bbv12I	GWGCWC	3 cut(s)	412, 688, 972
BbvI	GCAGC	4 cut(s)	459, 691, 889, 1079
BccI	CCATC	5 cut(s)	100, 254, 314, 889, 1094
BclI	TGATCA	1 cut(s)	361
BcoDI	GTCTC	4 cut(s)	298, 556, 670, 1235
BfaI	CTAG	5 cut(s)	315, 629, 914, 942, 1388
BfoI	RGCGCY	2 cut(s)	469, 1016
BisI	GCNGC	5 cut(s)	448, 705, 903, 921, 1068
BlsI	GCNGC	5 cut(s)	449, 706, 904, 922, 1069
Bme18I	GGWCC	2 cut(s)	422, 878
BmgT120I	GGNCC	3 cut(s)	422, 878, 1216
BmiI	GGNNCC	4 cut(s)	325, 786, 919, 1217
BmsI	GCATC	4 cut(s)	605, 612, 817, 832
BmtI	GCTAGC	1 cut(s)	318
BpiI	GAAGAC	3 cut(s)	484, 1205, 1258
Bpu14I	TTCGAA	2 cut(s)	84, 475
BpuEI	CTTGAG	2 cut(s)	419, 434
BsaI	GGTCTC	1 cut(s)	556
BsaJI	CCNNGG	2 cut(s)	537, 569
BsaWI	WCCGGW	1 cut(s)	863
BsaXI	ACNNNNNCTCC	2 cut(s)	534, 564
Bsc4I	CCNNNNNNNGG	1 cut(s)	333
Bse21I	CCTNAGG	2 cut(s)	273, 789
Bse3DI	GCAATG	2 cut(s)	50, 303
BseDI	CCNNGG	2 cut(s)	537, 569
BseGI	GGATG	3 cut(s)	517, 627, 832
BseLI	CCNNNNNNNGG	1 cut(s)	333
BseMI	GCAATG	2 cut(s)	50, 303
BseMII	CTCAG	6 cut(s)	264, 567, 903, 1134, 1230, 1239
BseRI	GAGGAG	4 cut(s)	1190, 1203, 1206, 1299
BseXI	GCAGC	4 cut(s)	459, 691, 889, 1079
Bsh1285I	CGRYCG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	1218
BshNI	GGYRCC	1 cut(s)	323
BsiEI	CGRYCG	1 cut(s)	406
BsiHKAI	GWGCWC	3 cut(s)	412, 688, 972
BsiSI	CCGG	1 cut(s)	864
BslFI	GGGAC	1 cut(s)	575
BslI	CCNNNNNNNGG	1 cut(s)	333
BsmAI	GTCTC	4 cut(s)	298, 556, 670, 1235
BsmBI	CGTCTC	1 cut(s)	670
BsmFI	GGGAC	1 cut(s)	575
BsnI	GGCC	1 cut(s)	1218
Bso31I	GGTCTC	1 cut(s)	556
Bsp119I	TTCGAA	2 cut(s)	84, 475
Bsp1286I	GDGCHC	4 cut(s)	340, 412, 688, 972
Bsp143I	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
BspACI	CCGC	6 cut(s)	420, 921, 1038, 1163, 1185, 1338
BspANI	GGCC	1 cut(s)	1218
BspCNI	CTCAG	6 cut(s)	265, 566, 902, 1135, 1231, 1238
BspLI	GGNNCC	4 cut(s)	325, 786, 919, 1217
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	3 cut(s)	148, 197, 616
BspT104I	TTCGAA	2 cut(s)	84, 475
BspT107I	GGYRCC	1 cut(s)	323
BspTNI	GGTCTC	1 cut(s)	556
BsrBI	CCGCTC	1 cut(s)	420
BsrDI	GCAATG	2 cut(s)	50, 303
BssECI	CCNNGG	2 cut(s)	537, 569
BssMI	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
Bst4CI	ACNGT	8 cut(s)	223, 538, 573, 644, 1025, 1159, 1232, 1367
Bst6I	CTCTTC	1 cut(s)	1167
BstBI	TTCGAA	2 cut(s)	84, 475
BstC8I	GCNNGC	4 cut(s)	65, 208, 316, 1017
BstDEI	CTNAG	8 cut(s)	273, 553, 789, 889, 1115, 1143, 1225, 1239
BstDSI	CCRYGG	2 cut(s)	537, 569
BstF5I	GGATG	3 cut(s)	517, 627, 832
BstH2I	RGCGCY	2 cut(s)	469, 1016
BstHHI	GCGC	2 cut(s)	468, 1015
BstKTI	GATC	7 cut(s)	143, 192, 364, 406, 611, 713, 760
BstMAI	GTCTC	4 cut(s)	298, 556, 670, 1235
BstMBI	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
BstMCI	CGRYCG	1 cut(s)	406
BstMWI	GCNNNNNNNGC	4 cut(s)	355, 456, 465, 1215
BstNSI	RCATGY	1 cut(s)	454
BstV1I	GCAGC	4 cut(s)	459, 691, 889, 1079
BstV2I	GAAGAC	3 cut(s)	484, 1205, 1258
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
Bsu36I	CCTNAGG	2 cut(s)	273, 789
BsuRI	GGCC	1 cut(s)	1218
BtgI	CCRYGG	2 cut(s)	537, 569
BtgZI	GCGATG	4 cut(s)	78, 187, 333, 1066
BtsCI	GGATG	3 cut(s)	517, 627, 832
BtsI	GCAGTG	1 cut(s)	1123
BtsIMutI	CAGTG	3 cut(s)	972, 1123, 1372
Cac8I	GCNNGC	4 cut(s)	65, 208, 316, 1017
CfoI	GCGC	2 cut(s)	468, 1015
Cfr13I	GGNCC	3 cut(s)	422, 878, 1216
Csp6I	GTAC	1 cut(s)	324
CspCI	CAANNNNNGTGG	2 cut(s)	424, 459
CviAII	CATG	3 cut(s)	451, 587, 781
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	8 cut(s)	273, 553, 789, 889, 1115, 1143, 1225, 1239
DpnI	GATC	7 cut(s)	142, 191, 363, 405, 610, 712, 759
DpnII	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
Eam1104I	CTCTTC	1 cut(s)	1167
EarI	CTCTTC	1 cut(s)	1167
EciI	GGCGGA	1 cut(s)	1027
Eco24I	GRGCYC	1 cut(s)	340
Eco31I	GGTCTC	1 cut(s)	556
Eco32I	GATATC	2 cut(s)	766, 1276
Eco47I	GGWCC	2 cut(s)	422, 878
Eco47III	AGCGCT	1 cut(s)	467
Eco57I	CTGAAG	2 cut(s)	527, 1121
Eco81I	CCTNAGG	2 cut(s)	273, 789
EcoRV	GATATC	2 cut(s)	766, 1276
EcoT38I	GRGCYC	1 cut(s)	340
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	3 cut(s)	454, 590, 784
FaqI	GGGAC	1 cut(s)	575
FatI	CATG	3 cut(s)	450, 586, 780
FauI	CCCGC	1 cut(s)	1156
FbaI	TGATCA	1 cut(s)	361
Fnu4HI	GCNGC	5 cut(s)	448, 705, 903, 921, 1068
FokI	GGATG	3 cut(s)	524, 634, 839
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	5 cut(s)	448, 705, 903, 921, 1068
FspBI	CTAG	5 cut(s)	315, 629, 914, 942, 1388
GlaI	GCGC	2 cut(s)	467, 1014
GluI	GCNGC	5 cut(s)	448, 705, 903, 921, 1068
HaeII	RGCGCY	2 cut(s)	469, 1016
HaeIII	GGCC	1 cut(s)	1218
HapII	CCGG	1 cut(s)	864
HhaI	GCGC	2 cut(s)	468, 1015
Hin1II	CATG	3 cut(s)	454, 590, 784
Hin6I	GCGC	2 cut(s)	466, 1013
HinP1I	GCGC	2 cut(s)	466, 1013
HinfI	GANTC	5 cut(s)	183, 268, 848, 962, 992
HpaII	CCGG	1 cut(s)	864
HphI	GGTGA	3 cut(s)	133, 211, 683
Hpy166II	GTNNAC	1 cut(s)	1324
Hpy188III	TCNNGA	7 cut(s)	187, 257, 272, 413, 619, 629, 761
Hpy8I	GTNNAC	1 cut(s)	1324
Hpy99I	CGWCG	4 cut(s)	78, 106, 109, 227
HpyAV	CCTTC	1 cut(s)	502
HpyCH4III	ACNGT	8 cut(s)	223, 538, 573, 644, 1025, 1159, 1232, 1367
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	7 cut(s)	55, 534, 596, 845, 905, 975, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	355, 456, 465, 1215
HpyF3I	CTNAG	8 cut(s)	273, 553, 789, 889, 1115, 1143, 1225, 1239
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	3 cut(s)	454, 590, 784
HspAI	GCGC	2 cut(s)	466, 1013
KpnI	GGTACC	1 cut(s)	327
Ksp22I	TGATCA	1 cut(s)	361
Kzo9I	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
LmnI	GCTCC	5 cut(s)	784, 813, 917, 1235, 1286
Lsp1109I	GCAGC	4 cut(s)	459, 691, 889, 1079
LweI	GCATC	4 cut(s)	605, 612, 817, 832
MaeI	CTAG	5 cut(s)	315, 629, 914, 942, 1388
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	6 cut(s)	121, 573, 742, 772, 1025, 1131
MalI	GATC	7 cut(s)	142, 191, 363, 405, 610, 712, 759
MbiI	CCGCTC	1 cut(s)	420
MboI	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
MboII	GAAGA	8 cut(s)	489, 764, 767, 851, 852, 1184, 1210, 1263
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	4 cut(s)	340, 412, 688, 972
MluCI	AATT	6 cut(s)	79, 280, 525, 529, 1061, 1220
MlyI	GAGTC	2 cut(s)	857, 971
MseI	TTAA	4 cut(s)	528, 660, 947, 1181
MspA1I	CMGCKG	1 cut(s)	923
MspI	CCGG	1 cut(s)	864
MwoI	GCNNNNNNNGC	4 cut(s)	355, 456, 465, 1215
NdeII	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	3 cut(s)	454, 590, 784
NlaIV	GGNNCC	4 cut(s)	325, 786, 919, 1217
NmuCI	GTSAC	2 cut(s)	121, 1131
NspI	RCATGY	1 cut(s)	454
NspV	TTCGAA	2 cut(s)	84, 475
PcsI	WCGNNNNNNNCGW	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	183, 268, 992
PkrI	GCNGC	5 cut(s)	449, 706, 904, 922, 1069
Ple19I	CGATCG	1 cut(s)	406
PleI	GAGTC	2 cut(s)	856, 970
PpsI	GAGTC	2 cut(s)	856, 970
PshBI	ATTAAT	1 cut(s)	528
PspN4I	GGNNCC	4 cut(s)	325, 786, 919, 1217
PspPI	GGNCC	3 cut(s)	422, 878, 1216
PsuI	RGATCY	1 cut(s)	608
PvuI	CGATCG	1 cut(s)	406
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
SaqAI	TTAA	4 cut(s)	528, 660, 947, 1181
SatI	GCNGC	5 cut(s)	448, 705, 903, 921, 1068
Sau3AI	GATC	7 cut(s)	140, 189, 361, 403, 608, 710, 757
Sau96I	GGNCC	3 cut(s)	422, 878, 1216
SchI	GAGTC	2 cut(s)	857, 971
SduI	GDGCHC	4 cut(s)	340, 412, 688, 972
SfaNI	GCATC	4 cut(s)	605, 612, 817, 832
SfuI	TTCGAA	2 cut(s)	84, 475
SinI	GGWCC	2 cut(s)	422, 878
SmlI	CTYRAG	2 cut(s)	413, 434
SmoI	CTYRAG	2 cut(s)	413, 434
Sse9I	AATT	6 cut(s)	79, 280, 525, 529, 1061, 1220
SsiI	CCGC	6 cut(s)	420, 921, 1038, 1163, 1185, 1338
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	5 cut(s)	315, 629, 914, 942, 1388
TaaI	ACNGT	8 cut(s)	223, 538, 573, 644, 1025, 1159, 1232, 1367
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	7 cut(s)	84, 402, 475, 709, 738, 768, 1314
TasI	AATT	6 cut(s)	79, 280, 525, 529, 1061, 1220
TauI	GCSGC	1 cut(s)	923
TfiI	GAWTC	3 cut(s)	183, 268, 992
Tru1I	TTAA	4 cut(s)	528, 660, 947, 1181
Tru9I	TTAA	4 cut(s)	528, 660, 947, 1181
TscAI	CASTG	3 cut(s)	972, 1130, 1372
TseFI	GTSAC	2 cut(s)	121, 1131
TseI	GCWGC	4 cut(s)	447, 704, 902, 1067
Tsp45I	GTSAC	2 cut(s)	121, 1131
TspDTI	ATGAA	5 cut(s)	17, 292, 380, 575, 858
TspGWI	ACGGA	6 cut(s)	153, 286, 671, 985, 1039, 1263
TspRI	CASTG	3 cut(s)	972, 1130, 1372
VpaK11BI	GGWCC	2 cut(s)	422, 878
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	2 cut(s)	79, 1061
XbaI	TCTAGA	1 cut(s)	628
XceI	RCATGY	1 cut(s)	454
XspI	CTAG	5 cut(s)	315, 629, 914, 942, 1388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.