AT5G21010

and MATH

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
7135961 .. 7138711
2751 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G21010.1

Sequence Viewer

Length: 1233 bp
ATGTCAGAATCAGTGATTCAGGGATCGAATCCGGATCGGGTTTTATCTCCGACGAGCTCGAAATCAGTGACGCAGACGGTGAACGGGTCGCATCAATTCGTGATTCAAGGATACAGCTTAGCGAAAGGGATGGGTATAGGGAAGCACATAGCGAGTGATAATTTCTCCGTCGGAGGTTATCAGTGGGGGATCTTCTTCTACCCGGACGGTAAGAATCCGGAGGATAATTCGTCGTACGTCTCTGTTTTTATCGCATTGGCCAGTGAAGGAACCGAAGTTAGGGCGCTTTTCGAGCTAGCTCTTGTTGACCAAAGTGGAAAGGGGAAACATAAGGTTCATAGCCATTTTGAGCGGTCACTCGATGGTGGCCCTTATACACTCAAATACAGAGGAAGCATGTGGGGATACAAGCGTTTCTTCAGACGTTCCATTCTTGAGACATCTGACTACCTGAAAGACGATTGCTTGATAATCAATTGTACGGTTGGAGTTGTGGTTTCAGAAATACTCTGCCCACAGTTACACTCTGTTCACGTCCCTGATTCAGAACTTGGATCACATTTTGGAGTTCTACTGGATAGCATGGAAGGTTCTGATATAACTTTTAACATTGCTGGCGAGAAGTTTCTAGCTCATAAACTAGTACTGGCTGCTCGATCTCCATTTTTCAAGTCTAAGTTTTTCAGTGAGTTTGAAGCAAACAATACAGAGGTTACTATTAACGATTTGGAACCTAAGGTTTTTAAGGCTTTGCTACAATTCATGTACAAAGATTCTCTTCCGGAAGATGTGGAGCCTGCAACAGCTCATACATTTGAGCGCTTAAAGCTGTCAGAAATATACGAAACATTGATTGTAAAAGTTTTAGCAGCAGCCGACAAGTACGACCTGATTAGGCTCAGGTTGTTGTGTGAATCCCACATCTGCAAAGGCGTATCAGTCAAATCCGTCGCGAAGATCTTAGCGTTGGCTGACAGATATAATGCTAAGGAACTAAAAGGCGTTTGCCTTAAGTTTACTGCCGAGAACCTAGCAGCTGTCCTGGAGACAGACGCTTACCAACAGATGAAGGATGAATGTGTGACCCTCCAGTCCGAGCTTCTGAAGGCGGTGGCTGGTCACGAGGAAGGTAGTAACAGTACTGGAGGAGCAAAGTCTCAGAGCGTGTGGGCCCAACTTTCTGACGGCGGGGGCGATACCACCAGCCGACATGTTAGACAACGAACCACCTAG

Protein Analysis

410

Amino Acids

45.19

Weight (kDa)

6.13

Isoelectric Point (pI)

38.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 31 - 162 2.2e-30 MATH domain
BTB PF00651 193 - 310 6.4e-21 BTB/POZ domain
BACK_BPM_SPOP PF24570 316 - 368 1.9e-13 BPM/SPOP, BACK domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1090
AccBSI CCGCTC 1 cut(s) 352
AccII CGCG 1 cut(s) 953
AccIII TCCGGA 3 cut(s) 31, 217, 781
AciI CCGC 3 cut(s) 352, 1109, 1188
AclWI GGATC 4 cut(s) 31, 42, 197, 562
AcoI YGGCCR 1 cut(s) 258
AcuI CTGAAG 2 cut(s) 403, 1124
AfaI GTAC 6 cut(s) 236, 481, 645, 767, 884, 1141
AfeI AGCGCT 1 cut(s) 821
AfiI CCNNNNNNNGG 1 cut(s) 279
AflII CTTAAG 1 cut(s) 1010
AflIII ACRYGT 1 cut(s) 1210
AgsI TTSAA 3 cut(s) 107, 670, 695
AhlI ACTAGT 1 cut(s) 640
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 1 cut(s) 1041
AluBI AGCT 9 cut(s) 57, 117, 295, 299, 632, 806, 829, 1037, 1099
AluI AGCT 9 cut(s) 57, 117, 295, 299, 632, 806, 829, 1037, 1099
Alw21I GWGCWC 1 cut(s) 59
Alw26I GTCTC 4 cut(s) 244, 431, 1040, 1161
AlwI GGATC 4 cut(s) 31, 42, 197, 562
Aor13HI TCCGGA 3 cut(s) 31, 217, 781
Aor51HI AGCGCT 1 cut(s) 821
AoxI GGCC 3 cut(s) 258, 367, 1170
ApaI GGGCCC 1 cut(s) 1174
ApeKI GCWGC 4 cut(s) 650, 869, 872, 1034
AspLEI GCGC 2 cut(s) 286, 822
AspS9I GGNCC 3 cut(s) 368, 1170, 1171
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 91
AsuNHI GCTAGC 1 cut(s) 295
AxyI CCTNAGG 1 cut(s) 735
BaeGI GKGCMC 1 cut(s) 1174
BaeI ACNNNNGTAYC 2 cut(s) 397, 430
BalI TGGCCA 1 cut(s) 260
BanII GRGCYC 2 cut(s) 59, 1174
BauI CACGAG 1 cut(s) 1121
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 4 cut(s) 637, 881, 884, 1046
BccI CCATC 2 cut(s) 124, 356
BceAI ACGGC 1 cut(s) 1201
BciT130I CCWGG 1 cut(s) 1043
BciVI GTATCC 2 cut(s) 104, 398
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 4 cut(s) 244, 431, 1040, 1161
BcuI ACTAGT 1 cut(s) 640
BfaI CTAG 5 cut(s) 296, 629, 641, 1031, 1231
BfoI RGCGCY 2 cut(s) 287, 823
BfrI CTTAAG 1 cut(s) 1010
BfuI GTATCC 2 cut(s) 104, 398
BglII AGATCT 1 cut(s) 957
BisI GCNGC 4 cut(s) 651, 870, 873, 1035
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 4 cut(s) 652, 871, 874, 1036
BmcAI AGTACT 2 cut(s) 645, 1141
Bme1390I CCNGG 2 cut(s) 203, 1043
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 3 cut(s) 368, 1170, 1171
BmiI GGNNCC 4 cut(s) 271, 732, 795, 1172
BmrFI CCNGG 2 cut(s) 203, 1043
BmsI GCATC 1 cut(s) 100
BmtI GCTAGC 1 cut(s) 299
BpmI CTGGAG 3 cut(s) 1064, 1073, 1164
Bpu10I CCTNAGC 2 cut(s) 899, 987
Bpu1102I GCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 455
BpuMI CCSGG 1 cut(s) 203
BsaWI WCCGGW 3 cut(s) 31, 217, 781
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 5 cut(s) 261, 579, 651, 1090, 1147
Bse21I CCTNAGG 1 cut(s) 735
Bse3DI GCAATG 1 cut(s) 609
BseAI TCCGGA 3 cut(s) 31, 217, 781
BseBI CCWGG 1 cut(s) 1043
BseGI GGATG 2 cut(s) 135, 1078
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMI GCAATG 1 cut(s) 609
BseMII CTCAG 2 cut(s) 913, 1172
BseNI ACTGG 5 cut(s) 261, 579, 651, 1090, 1147
BseRI GAGGAG 1 cut(s) 1161
BseSI GKGCMC 1 cut(s) 1174
BseXI GCAGC 4 cut(s) 637, 881, 884, 1046
Bsh1236I CGCG 1 cut(s) 953
BshFI GGCC 3 cut(s) 260, 369, 1172
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 4 cut(s) 32, 203, 218, 782
BsiWI CGTACG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 521
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 4 cut(s) 244, 431, 1040, 1161
BsmBI CGTCTC 1 cut(s) 244
BsmFI GGGAC 1 cut(s) 521
BsnI GGCC 3 cut(s) 260, 369, 1172
Bsp120I GGGCCC 1 cut(s) 1170
Bsp1286I GDGCHC 2 cut(s) 59, 1174
Bsp13I TCCGGA 3 cut(s) 31, 217, 781
Bsp1407I TGTACA 1 cut(s) 765
Bsp143I GATC 6 cut(s) 23, 34, 189, 554, 656, 957
Bsp1720I GCTNAGC 1 cut(s) 118
Bsp68I TCGCGA 1 cut(s) 953
BspACI CCGC 3 cut(s) 352, 1109, 1188
BspANI GGCC 3 cut(s) 260, 369, 1172
BspCNI CTCAG 2 cut(s) 912, 1171
BspEI TCCGGA 3 cut(s) 31, 217, 781
BspFNI CGCG 1 cut(s) 953
BspLI GGNNCC 4 cut(s) 271, 732, 795, 1172
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 4 cut(s) 31, 42, 197, 562
BspTI CTTAAG 1 cut(s) 1010
BsrBI CCGCTC 1 cut(s) 352
BsrDI GCAATG 1 cut(s) 609
BsrGI TGTACA 1 cut(s) 765
BsrI ACTGG 5 cut(s) 261, 579, 651, 1090, 1147
BssMI GATC 6 cut(s) 23, 34, 189, 554, 656, 957
BssSI CACGAG 1 cut(s) 1121
Bst2BI CACGAG 1 cut(s) 1121
Bst2UI CCWGG 1 cut(s) 1043
Bst4CI ACNGT 5 cut(s) 79, 209, 484, 519, 1139
Bst6I CTCTTC 1 cut(s) 783
BstAFI CTTAAG 1 cut(s) 1010
BstAUI TGTACA 1 cut(s) 765
BstC8I GCNNGC 3 cut(s) 297, 616, 798
BstDEI CTNAG 7 cut(s) 118, 675, 735, 899, 961, 987, 1158
BstF5I GGATG 2 cut(s) 135, 1078
BstFNI CGCG 1 cut(s) 953
BstH2I RGCGCY 2 cut(s) 287, 823
BstHHI GCGC 2 cut(s) 286, 822
BstKTI GATC 6 cut(s) 26, 37, 192, 557, 659, 960
BstMAI GTCTC 4 cut(s) 244, 431, 1040, 1161
BstMBI GATC 6 cut(s) 23, 34, 189, 554, 656, 957
BstMWI GCNNNNNNNGC 2 cut(s) 292, 826
BstNI CCWGG 1 cut(s) 1043
BstNSI RCATGY 2 cut(s) 400, 1214
BstSCI CCNGG 2 cut(s) 201, 1041
BstSLI GKGCMC 1 cut(s) 1174
BstUI CGCG 1 cut(s) 953
BstV1I GCAGC 4 cut(s) 637, 881, 884, 1046
BstX2I RGATCY 2 cut(s) 189, 957
BstYI RGATCY 2 cut(s) 189, 957
Bsu36I CCTNAGG 1 cut(s) 735
BsuI GTATCC 2 cut(s) 104, 398
BsuRI GGCC 3 cut(s) 260, 369, 1172
BtrI CACGTC 1 cut(s) 535
BtsCI GGATG 2 cut(s) 135, 1078
BtsIMutI CAGTG 5 cut(s) 18, 72, 188, 268, 691
BtuMI TCGCGA 1 cut(s) 953
Cac8I GCNNGC 3 cut(s) 297, 616, 798
CfoI GCGC 2 cut(s) 286, 822
Cfr13I GGNCC 3 cut(s) 368, 1170, 1171
CseI GACGC 2 cut(s) 79, 1061
Csp6I GTAC 6 cut(s) 235, 480, 644, 766, 883, 1140
CviAII CATG 4 cut(s) 397, 583, 763, 1211
CviQI GTAC 6 cut(s) 235, 480, 644, 766, 883, 1140
DdeI CTNAG 7 cut(s) 118, 675, 735, 899, 961, 987, 1158
DpnI GATC 6 cut(s) 25, 36, 191, 556, 658, 959
DpnII GATC 6 cut(s) 23, 34, 189, 554, 656, 957
DrdI GACNNNNNNGTC 1 cut(s) 1090
DseDI GACNNNNNNGTC 1 cut(s) 1090
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 1 cut(s) 783
EarI CTCTTC 1 cut(s) 783
Ecl136II GAGCTC 1 cut(s) 57
Eco24I GRGCYC 2 cut(s) 59, 1174
Eco47III AGCGCT 1 cut(s) 821
Eco53kI GAGCTC 1 cut(s) 57
Eco57I CTGAAG 2 cut(s) 403, 1124
Eco81I CCTNAGG 1 cut(s) 735
EcoICRI GAGCTC 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 1041
EcoT38I GRGCYC 2 cut(s) 59, 1174
Esp3I CGTCTC 1 cut(s) 244
FaeI CATG 4 cut(s) 400, 586, 766, 1214
FalI AAGNNNNNCTT 4 cut(s) 401, 433, 762, 794
FaqI GGGAC 1 cut(s) 521
FatI CATG 4 cut(s) 396, 582, 762, 1210
FauI CCCGC 1 cut(s) 1181
Fnu4HI GCNGC 4 cut(s) 651, 870, 873, 1035
FokI GGATG 2 cut(s) 142, 1085
FriOI GRGCYC 2 cut(s) 59, 1174
Fsp4HI GCNGC 4 cut(s) 651, 870, 873, 1035
FspBI CTAG 5 cut(s) 296, 629, 641, 1031, 1231
GlaI GCGC 2 cut(s) 285, 821
GluI GCNGC 4 cut(s) 651, 870, 873, 1035
GsuI CTGGAG 3 cut(s) 1064, 1073, 1164
HaeII RGCGCY 2 cut(s) 287, 823
HaeIII GGCC 3 cut(s) 260, 369, 1172
HapII CCGG 4 cut(s) 32, 203, 218, 782
HgaI GACGC 2 cut(s) 79, 1061
HhaI GCGC 2 cut(s) 286, 822
Hin1II CATG 4 cut(s) 400, 586, 766, 1214
Hin6I GCGC 2 cut(s) 284, 820
HinP1I GCGC 2 cut(s) 284, 820
HincII GTYRAC 1 cut(s) 307
HindII GTYRAC 1 cut(s) 307
HinfI GANTC 8 cut(s) 8, 16, 28, 103, 214, 542, 773, 914
HpaII CCGG 4 cut(s) 32, 203, 218, 782
HphI GGTGA 1 cut(s) 91
Hpy166II GTNNAC 4 cut(s) 82, 307, 532, 1017
Hpy188III TCNNGA 7 cut(s) 32, 100, 218, 434, 782, 952, 1121
Hpy8I GTNNAC 4 cut(s) 82, 307, 532, 1017
Hpy99I CGWCG 4 cut(s) 55, 173, 235, 953
HpyAV CCTTC 5 cut(s) 260, 581, 1063, 1099, 1121
HpyCH4III ACNGT 5 cut(s) 79, 209, 484, 519, 1139
HpyCH4IV ACGT 3 cut(s) 237, 424, 534
HpyCH4V TGCA 2 cut(s) 800, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 292, 826
HpyF3I CTNAG 7 cut(s) 118, 675, 735, 899, 961, 987, 1158
HpySE526I ACGT 3 cut(s) 237, 424, 534
Hsp92II CATG 4 cut(s) 400, 586, 766, 1214
HspAI GCGC 2 cut(s) 284, 820
Kpn2I TCCGGA 3 cut(s) 31, 217, 781
Kzo9I GATC 6 cut(s) 23, 34, 189, 554, 656, 957
LmnI GCTCC 2 cut(s) 793, 1148
Lsp1109I GCAGC 4 cut(s) 637, 881, 884, 1046
LweI GCATC 1 cut(s) 100
MaeI CTAG 5 cut(s) 296, 629, 641, 1031, 1231
MaeII ACGT 3 cut(s) 237, 424, 534
MaeIII GTNAC 7 cut(s) 67, 354, 519, 712, 1081, 1118, 1133
MalI GATC 6 cut(s) 25, 36, 191, 556, 658, 959
MbiI CCGCTC 1 cut(s) 352
MboI GATC 6 cut(s) 23, 34, 189, 554, 656, 957
MboII GAAGA 6 cut(s) 184, 187, 409, 770, 797, 967
MfeI CAATTG 1 cut(s) 475
MflI RGATCY 2 cut(s) 189, 957
MhlI GDGCHC 2 cut(s) 59, 1174
MlsI TGGCCA 1 cut(s) 260
MluCI AATT 5 cut(s) 95, 160, 226, 475, 758
MluNI TGGCCA 1 cut(s) 260
MmeI TCCRAC 3 cut(s) 74, 151, 466
MnlI CCTC 7 cut(s) 167, 214, 383, 703, 1097, 1117, 1139
Mox20I TGGCCA 1 cut(s) 260
MroI TCCGGA 3 cut(s) 31, 217, 781
MscI TGGCCA 1 cut(s) 260
MseI TTAA 5 cut(s) 606, 720, 744, 824, 1011
Msp20I TGGCCA 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 1037
MspCI CTTAAG 1 cut(s) 1010
MspI CCGG 4 cut(s) 32, 203, 218, 782
MspR9I CCNGG 2 cut(s) 203, 1043
MunI CAATTG 1 cut(s) 475
MvaI CCWGG 1 cut(s) 1043
MvnI CGCG 1 cut(s) 953
MwoI GCNNNNNNNGC 2 cut(s) 292, 826
NciI CCSGG 1 cut(s) 203
NdeII GATC 6 cut(s) 23, 34, 189, 554, 656, 957
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 4 cut(s) 400, 586, 766, 1214
NlaIV GGNNCC 4 cut(s) 271, 732, 795, 1172
NmeAIII GCCGAG 1 cut(s) 1048
NmuCI GTSAC 4 cut(s) 67, 354, 1081, 1118
NruI TCGCGA 1 cut(s) 953
NspI RCATGY 2 cut(s) 400, 1214
PciI ACATGT 1 cut(s) 1210
PcsI WCGNNNNNNNCGW 1 cut(s) 1191
PfeI GAWTC 8 cut(s) 8, 16, 28, 103, 214, 542, 773, 914
Pfl23II CGTACG 1 cut(s) 234
PfoI TCCNGGA 1 cut(s) 1041
PkrI GCNGC 4 cut(s) 652, 871, 874, 1036
PscI ACATGT 1 cut(s) 1210
Psp124BI GAGCTC 1 cut(s) 59
Psp6I CCWGG 1 cut(s) 1041
PspGI CCWGG 1 cut(s) 1041
PspLI CGTACG 1 cut(s) 234
PspN4I GGNNCC 4 cut(s) 271, 732, 795, 1172
PspOMI GGGCCC 1 cut(s) 1170
PspPI GGNCC 3 cut(s) 368, 1170, 1171
PsuI RGATCY 2 cut(s) 189, 957
PvuII CAGCTG 1 cut(s) 1037
RruI TCGCGA 1 cut(s) 953
RsaI GTAC 6 cut(s) 236, 481, 645, 767, 884, 1141
RsaNI GTAC 6 cut(s) 235, 480, 644, 766, 883, 1140
SacI GAGCTC 1 cut(s) 59
SaqAI TTAA 5 cut(s) 606, 720, 744, 824, 1011
SatI GCNGC 4 cut(s) 651, 870, 873, 1035
Sau3AI GATC 6 cut(s) 23, 34, 189, 554, 656, 957
Sau96I GGNCC 3 cut(s) 368, 1170, 1171
ScaI AGTACT 2 cut(s) 645, 1141
ScrFI CCNGG 2 cut(s) 203, 1043
SduI GDGCHC 2 cut(s) 59, 1174
SfaNI GCATC 1 cut(s) 100
SmlI CTYRAG 2 cut(s) 434, 1010
SmoI CTYRAG 2 cut(s) 434, 1010
SpeI ACTAGT 1 cut(s) 640
Sse9I AATT 5 cut(s) 95, 160, 226, 475, 758
SsiI CCGC 3 cut(s) 352, 1109, 1188
SspMI CTAG 5 cut(s) 296, 629, 641, 1031, 1231
SstI GAGCTC 1 cut(s) 59
StyD4I CCNGG 2 cut(s) 201, 1041
TaaI ACNGT 5 cut(s) 79, 209, 484, 519, 1139
TaiI ACGT 3 cut(s) 240, 427, 537
TaqI TCGA 5 cut(s) 26, 59, 291, 360, 655
TasI AATT 5 cut(s) 95, 160, 226, 475, 758
TatI WGTACW 3 cut(s) 643, 765, 1139
TfiI GAWTC 8 cut(s) 8, 16, 28, 103, 214, 542, 773, 914
Tru1I TTAA 5 cut(s) 606, 720, 744, 824, 1011
Tru9I TTAA 5 cut(s) 606, 720, 744, 824, 1011
TscAI CASTG 5 cut(s) 18, 72, 188, 268, 691
TseFI GTSAC 4 cut(s) 67, 354, 1081, 1118
TseI GCWGC 4 cut(s) 650, 869, 872, 1034
Tsp45I GTSAC 4 cut(s) 67, 354, 1081, 1118
TspDTI ATGAA 4 cut(s) 326, 751, 1082, 1089
TspGWI ACGGA 2 cut(s) 157, 937
TspRI CASTG 5 cut(s) 18, 72, 188, 268, 691
Vha464I CTTAAG 1 cut(s) 1010
XceI RCATGY 2 cut(s) 400, 1214
XspI CTAG 5 cut(s) 296, 629, 641, 1031, 1231
ZrmI AGTACT 2 cut(s) 645, 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.