Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8262413.1

Orthogroup ID

OG0007108

Physical Location & Seq

Genomic Coordinates Reverse (-)

213 .. 779

Gene Structure 567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8262413.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgccaccgattcaaaaattctccctccgcggcgcgcaattgggtaaaccctcctcctcctcctcctcctccgccatggcgagctcgaagcccaagcccgacgacgagtcgtgctcgcgctcgatcagcgagaccgtcaacggctcccaccgcttcaccataaagggctattctttggccaaaggcatgggcgccggtaaatacatactcagcgacaccttcaccgtcggcggttacgattgggccatttacttttaccccgacggtaaaaaccccgaggatagctccgtctacgtctccgttttcattgcgctggtgagtgagggcaccgatgtcagggctttgttcgagctcaccttggtggaccagagcaacagtggcaaggacaaggtgcatagccactttgatcgtgccctagagagcgggccgtacacgttgaagtaccgaggcagcatgtggtatgtggtttcttggttcttgggtgatttcttgtttgtgttaattgctgtgcaagttttcggtgtttcgatgatagaattgagtacccttttcggtgaattatggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0019222 GO:0031323 GO:0031396 GO:0031399 GO:0032268 GO:0033554 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0080090 GO:0104004 GO:1903320

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB MATH

Protein Analysis

188

Amino Acids

20.66

Weight (kDa)

5.9

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03740 AT3G43700 AT3G43700 AT3G43700 AT5G21010
fragaria_vesca	FvH4_1g28561 FvH4_1g28561 FvH4_1g28561
malus_domestica	MD12G1010200.v1.1 MD14G1007300.v1.1
prunus_persica	Prupe.7G012100_v2.0.a1
pyrus_communis	pycom12g00790 pycom14g00590 pycom14g00600
rosa_chinensis	RchiOBHm_Chr3g0496191
rosa_laevigata	RLG00000022553
rosa_multiflora	Rmu_co8262413.1_g000001 Rmu_sc0006695.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389480
rosa_rugosa	Rorug03G0280400
rosa_samantha	Rh3AG327200 Rh3BG363400 Rh3CG360100 Rh3DG363300
rosa_wichuraiana	Rw3G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	191, 326
AccBSI	CCGCTC	1 cut(s)	423
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	3 cut(s)	30, 35, 118
AciI	CCGC	6 cut(s)	28, 30, 72, 151, 231, 423
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	1 cut(s)	17
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	3 cut(s)	431, 443, 544
AfiI	CCNNNNNNNGG	1 cut(s)	336
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	14, 439
AhdI	GACNNNNNGTC	1 cut(s)	106
AleI	CACNNNNGTG	1 cut(s)	359
AluBI	AGCT	3 cut(s)	84, 285, 352
AluI	AGCT	3 cut(s)	84, 285, 352
Alw21I	GWGCWC	3 cut(s)	86, 116, 354
Alw26I	GTCTC	2 cut(s)	125, 301
Ama87I	CYCGRG	1 cut(s)	275
AoxI	GGCC	3 cut(s)	177, 243, 425
ApeKI	GCWGC	1 cut(s)	450
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	5 cut(s)	35, 37, 120, 194, 313
AspS9I	GGNCC	3 cut(s)	243, 364, 425
AsuHPI	GGTGA	6 cut(s)	148, 214, 328, 346, 494, 566
AvaI	CYCGRG	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	364
BaeGI	GKGCMC	2 cut(s)	329, 415
BalI	TGGCCA	1 cut(s)	179
BanI	GGYRCC	2 cut(s)	191, 326
BanII	GRGCYC	2 cut(s)	86, 354
Bbv12I	GWGCWC	3 cut(s)	86, 116, 354
BbvI	GCAGC	1 cut(s)	462
BceAI	ACGGC	2 cut(s)	157, 412
BcoDI	GTCTC	2 cut(s)	125, 301
BfaI	CTAG	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	2 cut(s)	31, 451
BlsI	GCNGC	2 cut(s)	32, 452
Bme18I	GGWCC	1 cut(s)	364
BmeRI	GACNNNNNGTC	1 cut(s)	106
BmeT110I	CYCGRG	1 cut(s)	275
BmgT120I	GGNCC	3 cut(s)	243, 364, 425
BmiI	GGNNCC	3 cut(s)	145, 193, 328
BplI	GAGNNNNNCTC	4 cut(s)	98, 130, 269, 301
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	5 cut(s)	28, 75, 276, 357, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	336
Bse118I	RCCGGY	1 cut(s)	194
Bse3DI	GCAATG	1 cut(s)	306
BseDI	CCNNGG	5 cut(s)	28, 75, 276, 357, 445
BseLI	CCNNNNNNNGG	1 cut(s)	336
BseMI	GCAATG	1 cut(s)	306
BseMII	CTCAG	1 cut(s)	223
BsePI	GCGCGC	1 cut(s)	33
BseRI	GAGGAG	6 cut(s)	43, 46, 49, 52, 55, 58
BseSI	GKGCMC	2 cut(s)	329, 415
BseXI	GCAGC	1 cut(s)	462
Bsh1236I	CGCG	3 cut(s)	30, 35, 118
BshFI	GGCC	3 cut(s)	179, 245, 427
BshNI	GGYRCC	2 cut(s)	191, 326
BsiHKAI	GWGCWC	3 cut(s)	86, 116, 354
BsiHKCI	CYCGRG	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	195
BslI	CCNNNNNNNGG	1 cut(s)	336
BsmAI	GTCTC	2 cut(s)	125, 301
BsmBI	CGTCTC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	179, 245, 427
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	1 cut(s)	275
Bsp1286I	GDGCHC	5 cut(s)	86, 116, 329, 354, 415
Bsp143I	GATC	2 cut(s)	123, 406
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	6 cut(s)	28, 30, 72, 151, 231, 423
BspANI	GGCC	3 cut(s)	179, 245, 427
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	3 cut(s)	30, 35, 118
BspLI	GGNNCC	3 cut(s)	145, 193, 328
BspT107I	GGYRCC	2 cut(s)	191, 326
BspTNI	GGTCTC	1 cut(s)	125
BsrBI	CCGCTC	1 cut(s)	423
BsrDI	GCAATG	1 cut(s)	306
BsrFI	RCCGGY	1 cut(s)	194
BssAI	RCCGGY	1 cut(s)	194
BssECI	CCNNGG	5 cut(s)	28, 75, 276, 357, 445
BssHII	GCGCGC	1 cut(s)	33
BssMI	GATC	2 cut(s)	123, 406
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	75, 357
Bst4CI	ACNGT	4 cut(s)	136, 226, 266, 377
BstACI	GRCGYC	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	35, 82, 116, 425
BstDEI	CTNAG	1 cut(s)	209
BstDSI	CCRYGG	2 cut(s)	28, 75
BstFNI	CGCG	3 cut(s)	30, 35, 118
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	5 cut(s)	35, 37, 120, 194, 313
BstKTI	GATC	2 cut(s)	126, 409
BstMAI	GTCTC	2 cut(s)	125, 301
BstMBI	GATC	2 cut(s)	123, 406
BstMWI	GCNNNNNNNGC	3 cut(s)	126, 150, 378
BstNSI	RCATGY	1 cut(s)	457
BstSLI	GKGCMC	2 cut(s)	329, 415
BstUI	CGCG	3 cut(s)	30, 35, 118
BstV1I	GCAGC	1 cut(s)	462
BstXI	CCANNNNNNTGG	1 cut(s)	187
BsuRI	GGCC	3 cut(s)	179, 245, 427
BtgI	CCRYGG	2 cut(s)	28, 75
BtsIMutI	CAGTG	1 cut(s)	382
Cac8I	GCNNGC	4 cut(s)	35, 82, 116, 425
CfoI	GCGC	5 cut(s)	35, 37, 120, 194, 313
Cfr10I	RCCGGY	1 cut(s)	194
Cfr13I	GGNCC	3 cut(s)	243, 364, 425
Cfr42I	CCGCGG	1 cut(s)	31
Csp6I	GTAC	3 cut(s)	430, 442, 543
CviAII	CATG	3 cut(s)	76, 187, 454
CviQI	GTAC	3 cut(s)	430, 442, 543
DdeI	CTNAG	1 cut(s)	209
DinI	GGCGCC	1 cut(s)	193
DpnI	GATC	2 cut(s)	125, 408
DpnII	GATC	2 cut(s)	123, 406
DriI	GACNNNNNGTC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	177
Eam1105I	GACNNNNNGTC	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	61
Ecl136II	GAGCTC	2 cut(s)	84, 352
Eco130I	CCWWGG	2 cut(s)	75, 357
Eco24I	GRGCYC	2 cut(s)	86, 354
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	364
Eco53kI	GAGCTC	2 cut(s)	84, 352
Eco88I	CYCGRG	1 cut(s)	275
EcoICRI	GAGCTC	2 cut(s)	84, 352
EcoT14I	CCWWGG	2 cut(s)	75, 357
EcoT38I	GRGCYC	2 cut(s)	86, 354
EgeI	GGCGCC	1 cut(s)	193
EheI	GGCGCC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	75, 357
Esp3I	CGTCTC	1 cut(s)	301
FaeI	CATG	3 cut(s)	79, 190, 457
FaiI	YATR	8 cut(s)	77, 161, 188, 206, 396, 455, 462, 562
FatI	CATG	3 cut(s)	75, 186, 453
FauI	CCCGC	1 cut(s)	416
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	2 cut(s)	31, 451
FriOI	GRGCYC	2 cut(s)	86, 354
Fsp4HI	GCNGC	2 cut(s)	31, 451
FspBI	CTAG	1 cut(s)	416
GlaI	GCGC	5 cut(s)	34, 36, 119, 193, 312
GluI	GCNGC	2 cut(s)	31, 451
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	3 cut(s)	179, 245, 427
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	5 cut(s)	35, 37, 120, 194, 313
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	3 cut(s)	79, 190, 457
Hin6I	GCGC	5 cut(s)	33, 35, 118, 192, 311
HinP1I	GCGC	5 cut(s)	33, 35, 118, 192, 311
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
HinfI	GANTC	2 cut(s)	10, 107
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	6 cut(s)	148, 214, 328, 346, 494, 566
Hpy166II	GTNNAC	5 cut(s)	47, 139, 292, 364, 432
Hpy8I	GTNNAC	5 cut(s)	47, 139, 292, 364, 432
Hpy99I	CGWCG	4 cut(s)	104, 107, 230, 266
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	4 cut(s)	136, 226, 266, 377
HpyCH4IV	ACGT	2 cut(s)	294, 434
HpyCH4V	TGCA	2 cut(s)	394, 511
HpyF10VI	GCNNNNNNNGC	3 cut(s)	126, 150, 378
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	2 cut(s)	294, 434
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	3 cut(s)	79, 190, 457
HspAI	GCGC	5 cut(s)	33, 35, 118, 192, 311
KasI	GGCGCC	1 cut(s)	191
KspI	CCGCGG	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	123, 406
LmnI	GCTCC	2 cut(s)	149, 290
LpnPI	CCDG	4 cut(s)	208, 299, 322, 380
Lsp1109I	GCAGC	1 cut(s)	462
MaeI	CTAG	1 cut(s)	416
MaeII	ACGT	2 cut(s)	294, 434
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	2 cut(s)	125, 408
MbiI	CCGCTC	1 cut(s)	423
MboI	GATC	2 cut(s)	123, 406
MfeI	CAATTG	1 cut(s)	38
MhlI	GDGCHC	5 cut(s)	86, 116, 329, 354, 415
MlsI	TGGCCA	1 cut(s)	179
MluCI	AATT	5 cut(s)	17, 38, 501, 536, 557
MluNI	TGGCCA	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	192
MlyI	GAGTC	1 cut(s)	116
Mox20I	TGGCCA	1 cut(s)	179
MscI	TGGCCA	1 cut(s)	179
MseI	TTAA	1 cut(s)	500
MslI	CAYNNNNRTG	1 cut(s)	359
Msp20I	TGGCCA	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	30
MspI	CCGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	38
MvnI	CGCG	3 cut(s)	30, 35, 118
MwoI	GCNNNNNNNGC	3 cut(s)	126, 150, 378
NarI	GGCGCC	1 cut(s)	192
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	2 cut(s)	123, 406
NlaIII	CATG	3 cut(s)	79, 190, 457
NlaIV	GGNNCC	3 cut(s)	145, 193, 328
NspI	RCATGY	1 cut(s)	457
OliI	CACNNNNGTG	1 cut(s)	359
PauI	GCGCGC	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	32, 452
PleI	GAGTC	1 cut(s)	115
PluTI	GGCGCC	1 cut(s)	195
PpsI	GAGTC	1 cut(s)	115
Psp124BI	GAGCTC	2 cut(s)	86, 354
PspN4I	GGNNCC	3 cut(s)	145, 193, 328
PspPI	GGNCC	3 cut(s)	243, 364, 425
PteI	GCGCGC	1 cut(s)	33
RsaI	GTAC	3 cut(s)	431, 443, 544
RsaNI	GTAC	3 cut(s)	430, 442, 543
RseI	CAYNNNNRTG	1 cut(s)	359
SacI	GAGCTC	2 cut(s)	86, 354
SacII	CCGCGG	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	500
SatI	GCNGC	2 cut(s)	31, 451
Sau3AI	GATC	2 cut(s)	123, 406
Sau96I	GGNCC	3 cut(s)	243, 364, 425
SchI	GAGTC	1 cut(s)	116
SduI	GDGCHC	5 cut(s)	86, 116, 329, 354, 415
SetI	ASST	8 cut(s)	86, 221, 287, 297, 354, 359, 393, 437
SfoI	GGCGCC	1 cut(s)	193
Sfr303I	CCGCGG	1 cut(s)	31
SgrBI	CCGCGG	1 cut(s)	31
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	17, 38, 501, 536, 557
SsiI	CCGC	6 cut(s)	28, 30, 72, 151, 231, 423
SspDI	GGCGCC	1 cut(s)	191
SspMI	CTAG	1 cut(s)	416
SstI	GAGCTC	2 cut(s)	86, 354
StyI	CCWWGG	2 cut(s)	75, 357
TaaI	ACNGT	4 cut(s)	136, 226, 266, 377
TaiI	ACGT	2 cut(s)	297, 437
TaqI	TCGA	4 cut(s)	86, 122, 348, 527
TasI	AATT	5 cut(s)	17, 38, 501, 536, 557
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	500
Tru9I	TTAA	1 cut(s)	500
TscAI	CASTG	1 cut(s)	382
TseI	GCWGC	1 cut(s)	450
TspDTI	ATGAA	1 cut(s)	295
TspGWI	ACGGA	2 cut(s)	277, 289
TspRI	CASTG	1 cut(s)	382
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	17
XceI	RCATGY	1 cut(s)	457
XcmI	CCANNNNNNNNNTGG	1 cut(s)	374
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.