Rmu_sc0006695.1_g000008

BTB POZ and MATH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006695.1
Physical Location & Seq
Reverse (-)
37127 .. 42002
4876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006695.1_g000008.1.cds

Sequence Viewer

Length: 1563 bp
atgtcgtcagggagcagtaggagtagaggaggaggaggagagaagagcggcgtgggtgtggtggtgccgtcgagctcacgcttcgtgactcagacggtgaacggctcccaccagttcctcatcaaaggctactctctcgccaaaggcatcggcgtcggaaaacacattgccagcgagaatttcaccatcggcggctaccagtgggccatctacttctaccccgacggcaaaaaccccgaggacaactcggcctacgtttccgtcttcattgccctcgccagcgaaggcaccgatgtccgagccctcttcgagttgaccctcctcgatcagggccccgacgccaagcacaaggtccattcccatttcgatcgatccctcgagagcgggccctacactctcaagtacagaggcagcatgtgcgagaatttcaccatcggcggctaccagtgggccatctacttctaccccgacggcaaaaaccccgaggacaactcggcctacgtttccgtcttcattgccctcgccagcgaaggcaccgatgtccgagccctcttcgagttgaccctcctcgatcagggccccgacgccaagcacaaggtccattcccatttcgatcgatccctcgagagcgggccctacactctcaagtacagaggcagcatgtggggctacaaacgcttttaccgacgcaccatgctcgaatcctcctccttcctcaaggacgattgcctcaaaattaactgcaccgtcggcgttgtggtttctgccattgatagttccagactgcactccattgatgtccctgactctgacatcggagcacatttcggtatgtttttggagaatggggagggctctgatgttactttcaatgtctccggggttaagtttcctactcacaagctcgtattggctgctcgttcccccgaattcgagaatgagttctttaatggactcgaagaggacaatcaggagatactggtcgacgatttggagcccaaagtctttaaggctttgcttcacttcttatatacagataatcttattgaggatgaggagttgtcagagtcaagttcatcttgcatgcattctttatccgacatattagctgcaaagttgctagctgcagcagacaaatatggcttaacaaggcttcgactcatgtgtgaatctgttctctgcaaggatatatctgttaattctgttgcgaatatccttgccttagccgatcgctattctgctgtcgaactaaaatctgtttgcctaaagtttgctgctgaaaatcttgtcgctgtcatggaaacggatggttttgagttgctcaaggaaaactgtccactgctgcagtcagagcttctgaagacagttgcaggaagtgaggaggaactaagcggagggggaaagagtcaaagtgtatgggcgcagttttcagatggtgggaattccaatgatagacgtgcaagacaacagaccctgcaaaatggagagagaggtcagagaatttgggtccagtctttggatggcagtgatgctagaggaatgagtcctgggcaagaaggttga

Protein Analysis

520

Amino Acids

57.03

Weight (kDa)

5.15

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 64, 287, 533
AccB7I CCANNNNNTGG 1 cut(s) 1516
AccBSI CCGCTC 3 cut(s) 48, 384, 630
AccI GTMKAC 1 cut(s) 984
AciI CCGC 6 cut(s) 48, 192, 384, 438, 630, 1392
AclWI GGATC 2 cut(s) 366, 612
AcsI RAATTY 5 cut(s) 178, 424, 929, 1441, 1500
AcuI CTGAAG 1 cut(s) 1379
AcyI GRCGYC 3 cut(s) 153, 339, 585
AfaI GTAC 2 cut(s) 404, 650
AfiI CCNNNNNNNGG 3 cut(s) 328, 574, 1516
AgsI TTSAA 1 cut(s) 871
AjiI CACGTC 1 cut(s) 1457
AjnI CCWGG 1 cut(s) 1546
AluBI AGCT 5 cut(s) 75, 904, 1109, 1124, 1354
AluI AGCT 5 cut(s) 75, 904, 1109, 1124, 1354
Alw21I GWGCWC 2 cut(s) 77, 823
Alw26I GTCTC 1 cut(s) 880
AlwI GGATC 2 cut(s) 366, 612
AlwNI CAGNNNCTG 1 cut(s) 1474
Ama87I CYCGRG 4 cut(s) 236, 377, 482, 623
AoxI GGCC 8 cut(s) 204, 249, 331, 386, 450, 495, 577, 632
ApaI GGGCCC 4 cut(s) 335, 390, 581, 636
ApeKI GCWGC 8 cut(s) 411, 657, 914, 1109, 1124, 1127, 1274, 1342
ApoI RAATTY 5 cut(s) 178, 424, 929, 1441, 1500
Asp700I GAANNNNTTC 2 cut(s) 941, 1173
AspLEI GCGC 1 cut(s) 1423
AsuC2I CCSGG 1 cut(s) 880
AsuHPI GGTGA 3 cut(s) 109, 175, 421
AsuNHI GCTAGC 1 cut(s) 1120
AvaI CYCGRG 4 cut(s) 236, 377, 482, 623
AvaII GGWCC 3 cut(s) 352, 598, 1507
BaeGI GKGCMC 4 cut(s) 335, 390, 581, 636
BanI GGYRCC 3 cut(s) 64, 287, 533
BanII GRGCYC 9 cut(s) 77, 304, 335, 390, 550, 581, 636, 857, 999
BbsI GAAGAC 3 cut(s) 256, 502, 1367
Bbv12I GWGCWC 2 cut(s) 77, 823
BbvI GCAGC 8 cut(s) 423, 669, 901, 1096, 1111, 1139, 1261, 1329
BccI CCATC 7 cut(s) 194, 215, 440, 461, 1301, 1427, 1514
BceAI ACGGC 4 cut(s) 52, 118, 241, 487
BcgI CGANNNNNNTGC 4 cut(s) 136, 170, 679, 713
BciT130I CCWGG 1 cut(s) 1548
BcnI CCSGG 1 cut(s) 880
BcoDI GTCTC 1 cut(s) 880
BfaI CTAG 2 cut(s) 1121, 1533
BfmI CTRYAG 2 cut(s) 1125, 1343
Bme1390I CCNGG 2 cut(s) 880, 1548
Bme18I GGWCC 3 cut(s) 352, 598, 1507
BmeT110I CYCGRG 4 cut(s) 236, 377, 482, 623
BmgBI CACGTC 1 cut(s) 1457
BmrFI CCNGG 2 cut(s) 880, 1548
BmsI GCATC 2 cut(s) 156, 1519
BmtI GCTAGC 1 cut(s) 1124
BpiI GAAGAC 3 cut(s) 256, 502, 1367
BplI GAGNNNNNCTC 4 cut(s) 230, 262, 476, 508
Bpu10I CCTNAGC 1 cut(s) 1222
BpuEI CTTGAG 4 cut(s) 383, 629, 701, 1307
BpuMI CCSGG 1 cut(s) 880
Bsa29I ATCGAT 2 cut(s) 370, 616
BsaHI GRCGYC 3 cut(s) 153, 339, 585
BsaJI CCNNGG 4 cut(s) 237, 483, 879, 1547
Bsc4I CCNNNNNNNGG 3 cut(s) 328, 574, 1516
Bse1I ACTGG 5 cut(s) 112, 199, 445, 984, 1510
Bse3DI GCAATG 3 cut(s) 165, 267, 513
BseBI CCWGG 1 cut(s) 1548
BseCI ATCGAT 2 cut(s) 370, 616
BseDI CCNNGG 4 cut(s) 237, 483, 879, 1547
BseGI GGATG 3 cut(s) 1057, 1312, 1525
BseLI CCNNNNNNNGG 3 cut(s) 328, 574, 1516
BseMI GCAATG 3 cut(s) 165, 267, 513
BseMII CTCAG 1 cut(s) 104
BseNI ACTGG 5 cut(s) 112, 199, 445, 984, 1510
BseRI GAGGAG 9 cut(s) 42, 45, 48, 51, 311, 557, 697, 1070, 1394
BseSI GKGCMC 4 cut(s) 335, 390, 581, 636
BseXI GCAGC 8 cut(s) 423, 669, 901, 1096, 1111, 1139, 1261, 1329
BsgI GTGCAG 2 cut(s) 727, 770
Bsh1285I CGRYCG 3 cut(s) 370, 616, 1231
BshFI GGCC 8 cut(s) 206, 251, 333, 388, 452, 497, 579, 634
BshNI GGYRCC 3 cut(s) 64, 287, 533
BshVI ATCGAT 2 cut(s) 370, 616
BsiEI CGRYCG 3 cut(s) 370, 616, 1231
BsiHKAI GWGCWC 2 cut(s) 77, 823
BsiHKCI CYCGRG 4 cut(s) 236, 377, 482, 623
BsiSI CCGG 1 cut(s) 879
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 3 cut(s) 328, 574, 1516
BsmAI GTCTC 1 cut(s) 880
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 1 cut(s) 1087
BsnI GGCC 8 cut(s) 206, 251, 333, 388, 452, 497, 579, 634
BsoBI CYCGRG 4 cut(s) 236, 377, 482, 623
Bsp120I GGGCCC 4 cut(s) 331, 386, 577, 632
Bsp143I GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
BspACI CCGC 6 cut(s) 48, 192, 384, 438, 630, 1392
BspANI GGCC 8 cut(s) 206, 251, 333, 388, 452, 497, 579, 634
BspCNI CTCAG 1 cut(s) 103
BspDI ATCGAT 2 cut(s) 370, 616
BspMAI CTGCAG 2 cut(s) 1129, 1347
BspOI GCTAGC 1 cut(s) 1124
BspPI GGATC 2 cut(s) 366, 612
BspQI GCTCTTC 1 cut(s) 38
BspT107I GGYRCC 3 cut(s) 64, 287, 533
BsrBI CCGCTC 3 cut(s) 48, 384, 630
BsrDI GCAATG 3 cut(s) 165, 267, 513
BsrI ACTGG 5 cut(s) 112, 199, 445, 984, 1510
BssECI CCNNGG 4 cut(s) 237, 483, 879, 1547
BssMI GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
BssNI GRCGYC 3 cut(s) 153, 339, 585
Bst2UI CCWGG 1 cut(s) 1548
Bst4CI ACNGT 4 cut(s) 97, 748, 1334, 1366
Bst6I CTCTTC 4 cut(s) 38, 311, 557, 954
BstACI GRCGYC 3 cut(s) 153, 339, 585
BstAPI GCANNNNNTGC 1 cut(s) 417
BstC8I GCNNGC 7 cut(s) 172, 280, 386, 526, 632, 1085, 1122
BstDEI CTNAG 3 cut(s) 90, 1222, 1388
BstENI CCTNNNNNAGG 2 cut(s) 326, 572
BstF5I GGATG 3 cut(s) 1057, 1312, 1525
BstHHI GCGC 1 cut(s) 1423
BstKTI GATC 7 cut(s) 328, 370, 374, 574, 616, 620, 1231
BstMAI GTCTC 1 cut(s) 880
BstMBI GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
BstMCI CGRYCG 3 cut(s) 370, 616, 1231
BstMWI GCNNNNNNNGC 5 cut(s) 417, 666, 675, 750, 1351
BstNI CCWGG 1 cut(s) 1548
BstNSI RCATGY 3 cut(s) 418, 664, 1087
BstSCI CCNGG 2 cut(s) 878, 1546
BstSFI CTRYAG 2 cut(s) 1125, 1343
BstSLI GKGCMC 4 cut(s) 335, 390, 581, 636
BstV1I GCAGC 8 cut(s) 423, 669, 901, 1096, 1111, 1139, 1261, 1329
BstV2I GAAGAC 3 cut(s) 256, 502, 1367
Bsu15I ATCGAT 2 cut(s) 370, 616
BsuRI GGCC 8 cut(s) 206, 251, 333, 388, 452, 497, 579, 634
BsuTUI ATCGAT 2 cut(s) 370, 616
BtrI CACGTC 1 cut(s) 1457
BtsCI GGATG 3 cut(s) 1057, 1312, 1525
BtsI GCAGTG 2 cut(s) 1337, 1531
BtsIMutI CAGTG 4 cut(s) 206, 452, 1337, 1531
Cac8I GCNNGC 7 cut(s) 172, 280, 386, 526, 632, 1085, 1122
CaiI CAGNNNCTG 1 cut(s) 1474
CfoI GCGC 1 cut(s) 1423
ClaI ATCGAT 2 cut(s) 370, 616
CseI GACGC 4 cut(s) 142, 347, 593, 696
Csp6I GTAC 2 cut(s) 403, 649
CviAII CATG 6 cut(s) 415, 661, 694, 1084, 1162, 1297
CviQI GTAC 2 cut(s) 403, 649
DdeI CTNAG 3 cut(s) 90, 1222, 1388
DpnI GATC 7 cut(s) 327, 369, 373, 573, 615, 619, 1230
DpnII GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
Eam1104I CTCTTC 4 cut(s) 38, 311, 557, 954
EarI CTCTTC 4 cut(s) 38, 311, 557, 954
Ecl136II GAGCTC 1 cut(s) 75
Eco24I GRGCYC 9 cut(s) 77, 304, 335, 390, 550, 581, 636, 857, 999
Eco47I GGWCC 3 cut(s) 352, 598, 1507
Eco53kI GAGCTC 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 1379
Eco88I CYCGRG 4 cut(s) 236, 377, 482, 623
EcoICRI GAGCTC 1 cut(s) 75
EcoNI CCTNNNNNAGG 2 cut(s) 326, 572
EcoO109I RGGNCCY 6 cut(s) 331, 332, 387, 577, 578, 633
EcoRI GAATTC 2 cut(s) 929, 1441
EcoRII CCWGG 1 cut(s) 1546
EcoT22I ATGCAT 1 cut(s) 1089
EcoT38I GRGCYC 9 cut(s) 77, 304, 335, 390, 550, 581, 636, 857, 999
FaeI CATG 6 cut(s) 418, 664, 697, 1087, 1165, 1300
FalI AAGNNNNNCTT 2 cut(s) 1063, 1095
FaqI GGGAC 1 cut(s) 785
FatI CATG 6 cut(s) 414, 660, 693, 1083, 1161, 1296
FauI CCCGC 2 cut(s) 377, 623
FblI GTMKAC 1 cut(s) 984
FokI GGATG 3 cut(s) 1064, 1319, 1532
FriOI GRGCYC 9 cut(s) 77, 304, 335, 390, 550, 581, 636, 857, 999
FspBI CTAG 2 cut(s) 1121, 1533
GlaI GCGC 1 cut(s) 1422
HaeIII GGCC 8 cut(s) 206, 251, 333, 388, 452, 497, 579, 634
HapII CCGG 1 cut(s) 879
HgaI GACGC 4 cut(s) 142, 347, 593, 696
HhaI GCGC 1 cut(s) 1423
Hin1I GRCGYC 3 cut(s) 153, 339, 585
Hin1II CATG 6 cut(s) 418, 664, 697, 1087, 1165, 1300
Hin6I GCGC 1 cut(s) 1421
HinP1I GCGC 1 cut(s) 1421
HincII GTYRAC 3 cut(s) 315, 561, 985
HindII GTYRAC 3 cut(s) 315, 561, 985
HinfI GANTC 9 cut(s) 88, 701, 806, 954, 1067, 1158, 1169, 1405, 1543
HpaII CCGG 1 cut(s) 879
HphI GGTGA 3 cut(s) 109, 175, 421
Hpy166II GTNNAC 5 cut(s) 100, 315, 561, 985, 1337
Hpy188III TCNNGA 6 cut(s) 85, 379, 625, 780, 934, 971
Hpy8I GTNNAC 5 cut(s) 100, 315, 561, 985, 1337
Hpy99I CGWCG 9 cut(s) 73, 158, 227, 341, 473, 587, 690, 752, 989
HpyAV CCTTC 4 cut(s) 278, 524, 721, 1550
HpyCH4III ACNGT 4 cut(s) 97, 748, 1334, 1366
HpyCH4IV ACGT 3 cut(s) 255, 501, 1456
HpyF10VI GCNNNNNNNGC 5 cut(s) 417, 666, 675, 750, 1351
HpyF3I CTNAG 3 cut(s) 90, 1222, 1388
HpySE526I ACGT 3 cut(s) 255, 501, 1456
Hsp92I GRCGYC 3 cut(s) 153, 339, 585
Hsp92II CATG 6 cut(s) 418, 664, 697, 1087, 1165, 1300
HspAI GCGC 1 cut(s) 1421
Kzo9I GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 4 cut(s) 12, 110, 818, 994
Lsp1109I GCAGC 8 cut(s) 423, 669, 901, 1096, 1111, 1139, 1261, 1329
LweI GCATC 2 cut(s) 156, 1519
MaeI CTAG 2 cut(s) 1121, 1533
MaeII ACGT 3 cut(s) 255, 501, 1456
MaeIII GTNAC 2 cut(s) 85, 862
MalI GATC 7 cut(s) 327, 369, 373, 573, 615, 619, 1230
MbiI CCGCTC 3 cut(s) 48, 384, 630
MboI GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
MboII GAAGA 7 cut(s) 55, 256, 298, 502, 544, 971, 1372
MluCI AATT 7 cut(s) 178, 424, 735, 929, 1198, 1441, 1500
MlyI GAGTC 7 cut(s) 82, 800, 948, 1076, 1152, 1414, 1552
MmeI TCCRAC 2 cut(s) 136, 1122
Mph1103I ATGCAT 1 cut(s) 1089
MroXI GAANNNNTTC 2 cut(s) 941, 1173
MseI TTAA 6 cut(s) 738, 885, 948, 1008, 1145, 1197
MspI CCGG 1 cut(s) 879
MspR9I CCNGG 2 cut(s) 880, 1548
Mva1269I GAATGC 1 cut(s) 1087
MvaI CCWGG 1 cut(s) 1548
MwoI GCNNNNNNNGC 5 cut(s) 417, 666, 675, 750, 1351
NciI CCSGG 1 cut(s) 880
NdeII GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
NheI GCTAGC 1 cut(s) 1120
NlaIII CATG 6 cut(s) 418, 664, 697, 1087, 1165, 1300
NmeAIII GCCGAG 2 cut(s) 227, 473
NmuCI GTSAC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 1089
NspI RCATGY 3 cut(s) 418, 664, 1087
PaeI GCATGC 1 cut(s) 1087
PaeR7I CTCGAG 2 cut(s) 377, 623
PciSI GCTCTTC 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 682
PctI GAATGC 1 cut(s) 1087
PdmI GAANNNNTTC 2 cut(s) 941, 1173
PfeI GAWTC 2 cut(s) 701, 1169
PflMI CCANNNNNTGG 1 cut(s) 1516
Ple19I CGATCG 3 cut(s) 370, 616, 1231
PleI GAGTC 7 cut(s) 82, 800, 948, 1075, 1152, 1413, 1551
PpsI GAGTC 7 cut(s) 82, 800, 948, 1075, 1152, 1413, 1551
Psp124BI GAGCTC 1 cut(s) 77
Psp6I CCWGG 1 cut(s) 1546
PspGI CCWGG 1 cut(s) 1546
PspOMI GGGCCC 4 cut(s) 331, 386, 577, 632
PstI CTGCAG 2 cut(s) 1129, 1347
PstNI CAGNNNCTG 1 cut(s) 1474
PvuI CGATCG 3 cut(s) 370, 616, 1231
RsaI GTAC 2 cut(s) 404, 650
RsaNI GTAC 2 cut(s) 403, 649
SacI GAGCTC 1 cut(s) 77
SalI GTCGAC 1 cut(s) 983
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 6 cut(s) 738, 885, 948, 1008, 1145, 1197
Sau3AI GATC 7 cut(s) 325, 367, 371, 571, 613, 617, 1228
SchI GAGTC 7 cut(s) 82, 800, 948, 1076, 1152, 1414, 1552
ScrFI CCNGG 2 cut(s) 880, 1548
SfaNI GCATC 2 cut(s) 156, 1519
SfcI CTRYAG 2 cut(s) 1125, 1343
Sfr274I CTCGAG 2 cut(s) 377, 623
SinI GGWCC 3 cut(s) 352, 598, 1507
SlaI CTCGAG 2 cut(s) 377, 623
SmlI CTYRAG 6 cut(s) 377, 398, 623, 644, 716, 1322
SmoI CTYRAG 6 cut(s) 377, 398, 623, 644, 716, 1322
SphI GCATGC 1 cut(s) 1087
Sse9I AATT 7 cut(s) 178, 424, 735, 929, 1198, 1441, 1500
SsiI CCGC 6 cut(s) 48, 192, 384, 438, 630, 1392
SspMI CTAG 2 cut(s) 1121, 1533
SstI GAGCTC 1 cut(s) 77
StyD4I CCNGG 2 cut(s) 878, 1546
TaaI ACNGT 4 cut(s) 97, 748, 1334, 1366
TaiI ACGT 3 cut(s) 258, 504, 1459
TasI AATT 7 cut(s) 178, 424, 735, 929, 1198, 1441, 1500
TatI WGTACW 2 cut(s) 402, 648
TauI GCSGC 3 cut(s) 51, 195, 441
TfiI GAWTC 2 cut(s) 701, 1169
Tru1I TTAA 6 cut(s) 738, 885, 948, 1008, 1145, 1197
Tru9I TTAA 6 cut(s) 738, 885, 948, 1008, 1145, 1197
TscAI CASTG 4 cut(s) 206, 452, 1344, 1531
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 8 cut(s) 411, 657, 914, 1109, 1124, 1127, 1274, 1342
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 256, 502, 1065
TspGWI ACGGA 3 cut(s) 250, 496, 1319
TspRI CASTG 4 cut(s) 206, 452, 1344, 1531
Van91I CCANNNNNTGG 1 cut(s) 1516
VpaK11BI GGWCC 3 cut(s) 352, 598, 1507
XagI CCTNNNNNAGG 2 cut(s) 326, 572
XapI RAATTY 5 cut(s) 178, 424, 929, 1441, 1500
XceI RCATGY 3 cut(s) 418, 664, 1087
XcmI CCANNNNNNNNNTGG 1 cut(s) 1517
XhoI CTCGAG 2 cut(s) 377, 623
XmiI GTMKAC 1 cut(s) 984
XmnI GAANNNNTTC 2 cut(s) 941, 1173
XspI CTAG 2 cut(s) 1121, 1533
Zsp2I ATGCAT 1 cut(s) 1089
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.