Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007108

Physical Location & Seq

Genomic Coordinates Forward (+)

15601754 .. 15603898

Gene Structure 2145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G43700.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTCAAAGCTAATGACCAGAACCAGCGGATCATCAAGCCCCAACACGATTCCAGACCAAATCGAATCACCAACAAGCTCAAGATCGGTGACGCAGACGACAAACGGATCGCACCAATTCGTGATACAAGGATACAGTTTAGCTAAAGGAATTGGTGTAGGGAAACACATAGCAAGTGATAATTTCTCCGTAGGAGGTTATCAATGGACTATCTTCGTCTACCCTGACGGTAAAAATCCAGAGGATAACTCTTCTTACGTCTCTGTGTTCATCGTTTTGGCTAGTGAATGTACTGAAGTTAGAGCGCTTTTTGAGCTTTCTCTTGTTGATCAAAGTGGTAAAGGGAAGCATAAGGTTCATAGCCATTTTAATCGTTCACTTGATGGTGGTCCTTATACGCTTAAGTACAGAGGAAGTATGTGGGGATACAAGCGTTTCTTCAGACGGTCCTTGCTTGAGACATCTGACTATCTTAAAGACGATTGCTTGAAAATTAATTGTACAGTTGGAGTTGTCGTTTCAGAAATGCATTGCCCACGGTTACTCTCGATTCATGTCCCAGACTCAGAACTTGGATCACATTTTGGAAAGTTGCTGGATACTTTACAAGGCTCGGATGTCACATTTGACGTTGCCGGTGAGAAGTTTCAAGCTCATAAATTGGTTTTGGCTGCACGATCTCAGTTTTTCAGATCAATGTTTTACAATACTCTAGCAGAGAACAACAGCGACGTAGTGATCAGCGATTTGGAACCTAAGGTTTTCAAGGCCTTGTTACACTTCATGTATAAAGATTCCCTCCCAGGAGATGTGGAACCATTAACGGCTCATTCATTTGACCTATTAAGGCCGTCCGAAATAGATGATACACTGATTGTAAAGCTTCTGGCAGCTGCGGAAATGTACAATCTGAGTAGGCTCAGATTATTGTGTGAATCTCACATCTGCAAAGGCATATCTATCAGCTCCGTGTCCAAGATCTTAGCTTTATCCGACAAATATAATGCATCCGAACTAAAAAGCGTTTCCTTAAAATTCACTGCAGAAAACCTAGCAGCTGTTCTGCAGACAAAAGCATATGAAGATCTGAAGGATGACTGTCCAAACCTCCAGTCTGAGCTACTAAAGGCGGTCGCTGGTTATGACGACACAAGTAGCAGCGGAGGAGGAAAGTCTCAGAGTGTTTGGGCTCAACTCTCTAACGGTGGTGAGACCAGTAGCCGAAGGGTCAGGCAGCGAACCACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006970 GO:0007154 GO:0008150 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009651 GO:0009987 GO:0009991 GO:0010035 GO:0031668 GO:0033554 GO:0042221 GO:0042631 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0070887 GO:0071214 GO:0071229 GO:0071462 GO:0071470 GO:0071472 GO:0071496 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

BTB MATH

Protein Analysis

415

Amino Acids

45.75

Weight (kDa)

6.86

Isoelectric Point (pI)

43.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	38 - 169	3.2e-30	MATH domain
BTB	PF00651	198 - 317	5.1e-22	BTB/POZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03740 AT3G43700 AT3G43700 AT3G43700 AT5G21010
fragaria_vesca	FvH4_1g28561 FvH4_1g28561 FvH4_1g28561
malus_domestica	MD12G1010200.v1.1 MD14G1007300.v1.1
prunus_persica	Prupe.7G012100_v2.0.a1
pyrus_communis	pycom12g00790 pycom14g00590 pycom14g00600
rosa_chinensis	RchiOBHm_Chr3g0496191
rosa_laevigata	RLG00000022553
rosa_multiflora	Rmu_co8262413.1_g000001 Rmu_sc0006695.1_g000008
rosa_roxburghii	Rroxscaffold_6G00389480
rosa_rugosa	Rorug03G0280400
rosa_samantha	Rh3AG327200 Rh3BG363400 Rh3CG360100 Rh3DG363300
rosa_wichuraiana	Rw3G028680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	4 cut(s)	27, 896, 1130, 1161
AclWI	GGATC	3 cut(s)	37, 115, 583
AcsI	RAATTY	1 cut(s)	1034
AcuI	CTGAAG	3 cut(s)	315, 424, 1109
AfaI	GTAC	4 cut(s)	292, 407, 502, 905
AfeI	AGCGCT	1 cut(s)	306
AflII	CTTAAG	1 cut(s)	401
AgsI	TTSAA	3 cut(s)	490, 650, 766
AjnI	CCWGG	1 cut(s)	802
Alw26I	GTCTC	4 cut(s)	265, 452, 1179, 1205
AlwI	GGATC	3 cut(s)	37, 115, 583
Aor51HI	AGCGCT	1 cut(s)	306
AoxI	GGCC	2 cut(s)	768, 848
ApeKI	GCWGC	6 cut(s)	671, 890, 893, 1055, 1158, 1234
ApoI	RAATTY	1 cut(s)	1034
ArsI	GACNNNNNNTTYG	2 cut(s)	1097, 1129
AseI	ATTAAT	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	307
AspS9I	GGNCC	2 cut(s)	389, 447
AsuHPI	GGTGA	4 cut(s)	60, 100, 650, 1220
AvaII	GGWCC	2 cut(s)	389, 447
AxyI	CCTNAGG	1 cut(s)	756
BaeI	ACNNNNGTAYC	2 cut(s)	418, 451
BanII	GRGCYC	1 cut(s)	1192
BbvI	GCAGC	5 cut(s)	658, 880, 902, 1067, 1170
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	2 cut(s)	835, 840
BciT130I	CCWGG	1 cut(s)	804
BciVI	GTATCC	3 cut(s)	125, 419, 592
BclI	TGATCA	2 cut(s)	328, 738
BcoDI	GTCTC	4 cut(s)	265, 452, 1179, 1205
BfaI	CTAG	3 cut(s)	282, 713, 1052
BfmI	CTRYAG	2 cut(s)	1041, 1064
BfoI	RGCGCY	1 cut(s)	308
BfrI	CTTAAG	1 cut(s)	401
BfuI	GTATCC	3 cut(s)	125, 419, 592
BglII	AGATCT	2 cut(s)	978, 1084
BisI	GCNGC	6 cut(s)	672, 891, 894, 1056, 1159, 1235
BlsI	GCNGC	6 cut(s)	673, 892, 895, 1057, 1160, 1236
Bme1390I	CCNGG	1 cut(s)	804
Bme18I	GGWCC	2 cut(s)	389, 447
BmgT120I	GGNCC	2 cut(s)	389, 447
BmiI	GGNNCC	2 cut(s)	753, 816
BmrFI	CCNGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	1016
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
BpmI	CTGGAG	1 cut(s)	1094
BpuEI	CTTGAG	2 cut(s)	64, 476
BsaI	GGTCTC	1 cut(s)	1205
BsaJI	CCNNGG	2 cut(s)	536, 802
BsaXI	ACNNNNNCTCC	2 cut(s)	501, 531
Bse118I	RCCGGY	1 cut(s)	635
Bse1I	ACTGG	2 cut(s)	1111, 1215
Bse21I	CCTNAGG	1 cut(s)	756
Bse3DI	GCAATG	1 cut(s)	529
BseBI	CCWGG	1 cut(s)	804
BseDI	CCNNGG	2 cut(s)	536, 802
BseGI	GGATG	3 cut(s)	622, 1007, 1099
BseMI	GCAATG	1 cut(s)	529
BseMII	CTCAG	6 cut(s)	579, 695, 902, 934, 1107, 1190
BseNI	ACTGG	2 cut(s)	1111, 1215
BseRI	GAGGAG	1 cut(s)	1179
BseXI	GCAGC	5 cut(s)	658, 880, 902, 1067, 1170
BsgI	GTGCAG	1 cut(s)	657
Bsh1285I	CGRYCG	1 cut(s)	1134
BshFI	GGCC	2 cut(s)	770, 850
BsiEI	CGRYCG	1 cut(s)	1134
BsiSI	CCGG	1 cut(s)	636
BslFI	GGGAC	1 cut(s)	542
BsmAI	GTCTC	4 cut(s)	265, 452, 1179, 1205
BsmBI	CGTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	542
BsnI	GGCC	2 cut(s)	770, 850
Bso31I	GGTCTC	1 cut(s)	1205
Bsp1286I	GDGCHC	1 cut(s)	1192
Bsp1407I	TGTACA	2 cut(s)	500, 903
BspACI	CCGC	4 cut(s)	27, 896, 1130, 1161
BspANI	GGCC	2 cut(s)	770, 850
BspCNI	CTCAG	6 cut(s)	578, 694, 903, 933, 1108, 1189
BspLI	GGNNCC	2 cut(s)	753, 816
BspMAI	CTGCAG	2 cut(s)	1045, 1068
BspPI	GGATC	3 cut(s)	37, 115, 583
BspTI	CTTAAG	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	1205
BsrDI	GCAATG	1 cut(s)	529
BsrFI	RCCGGY	1 cut(s)	635
BsrGI	TGTACA	2 cut(s)	500, 903
BsrI	ACTGG	2 cut(s)	1111, 1215
BssAI	RCCGGY	1 cut(s)	635
BssECI	CCNNGG	2 cut(s)	536, 802
Bst2UI	CCWGG	1 cut(s)	804
Bst4CI	ACNGT	7 cut(s)	137, 230, 447, 505, 540, 1100, 1205
Bst6I	CTCTTC	1 cut(s)	256
BstAFI	CTTAAG	1 cut(s)	401
BstAUI	TGTACA	2 cut(s)	500, 903
BstDEI	CTNAG	9 cut(s)	565, 681, 756, 911, 920, 982, 1116, 1176, 1245
BstDSI	CCRYGG	1 cut(s)	536
BstF5I	GGATG	3 cut(s)	622, 1007, 1099
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstMAI	GTCTC	4 cut(s)	265, 452, 1179, 1205
BstMCI	CGRYCG	1 cut(s)	1134
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	1 cut(s)	804
BstSCI	CCNGG	1 cut(s)	802
BstSFI	CTRYAG	2 cut(s)	1041, 1064
BstV1I	GCAGC	5 cut(s)	658, 880, 902, 1067, 1170
BstX2I	RGATCY	2 cut(s)	978, 1084
BstYI	RGATCY	2 cut(s)	978, 1084
Bsu36I	CCTNAGG	1 cut(s)	756
BsuI	GTATCC	3 cut(s)	125, 419, 592
BsuRI	GGCC	2 cut(s)	770, 850
BtgI	CCRYGG	1 cut(s)	536
BtsCI	GGATG	3 cut(s)	622, 1007, 1099
BtsI	GCAGTG	1 cut(s)	1038
BtsIMutI	CAGTG	2 cut(s)	869, 1038
CfoI	GCGC	1 cut(s)	307
Cfr10I	RCCGGY	1 cut(s)	635
Cfr13I	GGNCC	2 cut(s)	389, 447
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	4 cut(s)	291, 406, 501, 904
CviAII	CATG	2 cut(s)	554, 784
CviQI	GTAC	4 cut(s)	291, 406, 501, 904
DdeI	CTNAG	9 cut(s)	565, 681, 756, 911, 920, 982, 1116, 1176, 1245
Eam1104I	CTCTTC	1 cut(s)	256
EarI	CTCTTC	1 cut(s)	256
Eco147I	AGGCCT	1 cut(s)	770
Eco24I	GRGCYC	1 cut(s)	1192
Eco31I	GGTCTC	1 cut(s)	1205
Eco47I	GGWCC	2 cut(s)	389, 447
Eco47III	AGCGCT	1 cut(s)	306
Eco57I	CTGAAG	3 cut(s)	315, 424, 1109
Eco81I	CCTNAGG	1 cut(s)	756
EcoRII	CCWGG	1 cut(s)	802
EcoT22I	ATGCAT	2 cut(s)	531, 1009
EcoT38I	GRGCYC	1 cut(s)	1192
Esp3I	CGTCTC	1 cut(s)	265
FaeI	CATG	2 cut(s)	557, 787
FalI	AAGNNNNNCTT	2 cut(s)	422, 454
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	2 cut(s)	553, 783
FauNDI	CATATG	1 cut(s)	1078
FbaI	TGATCA	2 cut(s)	328, 738
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	6 cut(s)	672, 891, 894, 1056, 1159, 1235
FokI	GGATG	3 cut(s)	629, 994, 1106
FriOI	GRGCYC	1 cut(s)	1192
Fsp4HI	GCNGC	6 cut(s)	672, 891, 894, 1056, 1159, 1235
FspBI	CTAG	3 cut(s)	282, 713, 1052
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	6 cut(s)	672, 891, 894, 1056, 1159, 1235
GsuI	CTGGAG	1 cut(s)	1094
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	770, 850
HapII	CCGG	1 cut(s)	636
HgaI	GACGC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	307
Hin1II	CATG	2 cut(s)	557, 787
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	6 cut(s)	49, 65, 550, 563, 794, 935
HpaII	CCGG	1 cut(s)	636
HphI	GGTGA	4 cut(s)	60, 100, 650, 1220
Hpy166II	GTNNAC	2 cut(s)	220, 377
Hpy188III	TCNNGA	5 cut(s)	53, 81, 121, 239, 547
Hpy8I	GTNNAC	2 cut(s)	220, 377
Hpy99I	CGWCG	1 cut(s)	734
HpyAV	CCTTC	2 cut(s)	1084, 1218
HpyCH4III	ACNGT	7 cut(s)	137, 230, 447, 505, 540, 1100, 1205
HpyCH4IV	ACGT	3 cut(s)	258, 630, 732
HpyCH4V	TGCA	6 cut(s)	529, 674, 948, 1007, 1043, 1066
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	9 cut(s)	565, 681, 756, 911, 920, 982, 1116, 1176, 1245
HpySE526I	ACGT	3 cut(s)	258, 630, 732
Hsp92II	CATG	2 cut(s)	557, 787
HspAI	GCGC	1 cut(s)	305
Ksp22I	TGATCA	2 cut(s)	328, 738
LmnI	GCTCC	1 cut(s)	971
Lsp1109I	GCAGC	5 cut(s)	658, 880, 902, 1067, 1170
LweI	GCATC	1 cut(s)	1016
MaeI	CTAG	3 cut(s)	282, 713, 1052
MaeII	ACGT	3 cut(s)	258, 630, 732
MaeIII	GTNAC	4 cut(s)	88, 540, 619, 774
MboII	GAAGA	4 cut(s)	205, 243, 430, 1094
MflI	RGATCY	2 cut(s)	978, 1084
MhlI	GDGCHC	1 cut(s)	1192
MluCI	AATT	7 cut(s)	116, 150, 181, 492, 496, 659, 1034
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	2 cut(s)	487, 1017
MnlI	CCTC	7 cut(s)	188, 235, 404, 809, 1118, 1157, 1160
Mph1103I	ATGCAT	2 cut(s)	531, 1009
MseI	TTAA	7 cut(s)	369, 402, 474, 495, 821, 845, 1031
MspA1I	CMGCKG	4 cut(s)	27, 893, 1058, 1161
MspCI	CTTAAG	1 cut(s)	401
MspI	CCGG	1 cut(s)	636
MspR9I	CCNGG	1 cut(s)	804
MvaI	CCWGG	1 cut(s)	804
MwoI	GCNNNNNNNGC	1 cut(s)	313
NdeI	CATATG	1 cut(s)	1078
NlaIII	CATG	2 cut(s)	557, 787
NlaIV	GGNNCC	2 cut(s)	753, 816
NmuCI	GTSAC	2 cut(s)	88, 619
NsiI	ATGCAT	2 cut(s)	531, 1009
PceI	AGGCCT	1 cut(s)	770
PfeI	GAWTC	5 cut(s)	49, 65, 550, 794, 935
PkrI	GCNGC	6 cut(s)	673, 892, 895, 1057, 1160, 1236
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
PshBI	ATTAAT	1 cut(s)	495
Psp6I	CCWGG	1 cut(s)	802
PspGI	CCWGG	1 cut(s)	802
PspN4I	GGNNCC	2 cut(s)	753, 816
PspPI	GGNCC	2 cut(s)	389, 447
PstI	CTGCAG	2 cut(s)	1045, 1068
PsuI	RGATCY	2 cut(s)	978, 1084
PvuII	CAGCTG	2 cut(s)	893, 1058
RsaI	GTAC	4 cut(s)	292, 407, 502, 905
RsaNI	GTAC	4 cut(s)	291, 406, 501, 904
SaqAI	TTAA	7 cut(s)	369, 402, 474, 495, 821, 845, 1031
SatI	GCNGC	6 cut(s)	672, 891, 894, 1056, 1159, 1235
Sau96I	GGNCC	2 cut(s)	389, 447
SchI	GAGTC	1 cut(s)	557
ScrFI	CCNGG	1 cut(s)	804
SduI	GDGCHC	1 cut(s)	1192
SfaNI	GCATC	1 cut(s)	1016
SfcI	CTRYAG	2 cut(s)	1041, 1064
SinI	GGWCC	2 cut(s)	389, 447
SmlI	CTYRAG	3 cut(s)	79, 401, 455
SmoI	CTYRAG	3 cut(s)	79, 401, 455
Sse9I	AATT	7 cut(s)	116, 150, 181, 492, 496, 659, 1034
SseBI	AGGCCT	1 cut(s)	770
SsiI	CCGC	4 cut(s)	27, 896, 1130, 1161
SspMI	CTAG	3 cut(s)	282, 713, 1052
StuI	AGGCCT	1 cut(s)	770
StyD4I	CCNGG	1 cut(s)	802
TaaI	ACNGT	7 cut(s)	137, 230, 447, 505, 540, 1100, 1205
TaiI	ACGT	3 cut(s)	261, 633, 735
TaqI	TCGA	2 cut(s)	63, 548
TasI	AATT	7 cut(s)	116, 150, 181, 492, 496, 659, 1034
TatI	WGTACW	4 cut(s)	290, 405, 500, 903
TfiI	GAWTC	5 cut(s)	49, 65, 550, 794, 935
Tru1I	TTAA	7 cut(s)	369, 402, 474, 495, 821, 845, 1031
Tru9I	TTAA	7 cut(s)	369, 402, 474, 495, 821, 845, 1031
TscAI	CASTG	2 cut(s)	876, 1045
TseFI	GTSAC	2 cut(s)	88, 619
TseI	GCWGC	6 cut(s)	671, 890, 893, 1055, 1158, 1234
Tsp45I	GTSAC	2 cut(s)	88, 619
TspDTI	ATGAA	6 cut(s)	259, 347, 542, 772, 822, 1095
TspGWI	ACGGA	3 cut(s)	120, 178, 958
TspRI	CASTG	2 cut(s)	876, 1045
Vha464I	CTTAAG	1 cut(s)	401
VpaK11BI	GGWCC	2 cut(s)	389, 447
VspI	ATTAAT	1 cut(s)	495
XapI	RAATTY	1 cut(s)	1034
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	3 cut(s)	282, 713, 1052
Zsp2I	ATGCAT	2 cut(s)	531, 1009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.