AT3G03790

ankyrin repeat family protein regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0004406
Physical Location & Seq
Forward (+)
961750 .. 968152
6403 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G03790.2

Sequence Viewer

Length: 3237 bp
ATGGAATTGTCAGTCTCTCCTCAAACCCAAAAGATGAACCTGCAAACTCCTCGTAAAAGCTCACTTTCAGGATCTAGGAAAGATTTGTGGTTTGCTATACGGGAAGGTTCGTTGGTTGATGTGGATTCAGCACTTAGCATACTCAAGAAGACTGGTGGCAATATAAATTTAAGGAATGCCTATGGTCTCACTCCTCTGCATATTGCTGTATGGAGAAATCACATTCCTATTGTTAGGAGACTGCTTGCTGCTGGCGCTGATCCAGATGCTAGGGATGGAGAATCTGGTTGGAGTAGTCTTCACCGAGCTTTGCATTTTGGCCATCTCGCGGTAGCTAGCGTATTGATTGACTCAGGTGCTTCTTTTACTCTAGAAGACATAAAACTGCGAACACCGGTTGATTTGGTCTCAGGTCCAGTGGCTCAGGTTATTGGCGAGCAACAAAGTTCGGAGGTTTTCAGCTGGGGAAATGGTGCAAACTACCAACTTGGAACTGGCAATCAACATGTTCAGAAGGTACCAGGGAGAGTTGATTCACTGCATGGTTGTTTTATTAAGTTGGTCTCCGCTGCAAAGTTTCATAGTGTTGCCATTAGTACTCATGGAGAAGTCTACACGTGGGGATTTGGAAGGGGTGGCCGCCTTGGACATCCTGAATTTGACATTCATAGTGGTCAAGCTGCAGTGATTACTCCCCGCCAGGTGATATCTGGTTTAGGATCTCGCCGTGTAAAAGCAGTTGCGGCAGCTAAGCACCACACTGTTATTGCTACAGAAGGCGGGGATGTGTACACATGGGGTTCCAATAGAGAGGGTCAGCTTGGTTATACCTCTGTGGATACTCAGGCAACACCCCGCAAAGTGACTTCATTGAAGGCGAAGATTGTAGCTGTTTCTGCAGCAAACAAACACACCGCCGTAGTTTCTGACTGCGGTGAAGTTTTCACTTGGGGATGCAACAAGGAAGGTCAGCTTGGTTATGGAACCTCCAACTCAGCATCAAACTACTCTCCCAGATTGGTTGATTACTTGAAAGGAAAAGTGTTCACGGCTATTGCATCTTCAAAATATCACACTCTAGTGCTGCGAAATGATGGAGAGGTGTACACCTGGGGTCATCGGCTGGTGACTCCAAGACGTGTTATCATTTCCCGGAATTTAAAGAAAGCTGGGAACACACTATTGAATTTTCATCGAAGGAGACCTCTTCGATTGACTGCAATAGCTGCGGGAATGGTACACAGCTTGGCTCTAGCAGAAGATGGTGCATTCTTTTATTGGGTTTCCTCTGACTCCAATCTTAGATGCCAACAGTTGCATTCGCTGCACGGTAAAACAGTTGTGAGCATTTCAGCGGGTAAATACTGGGCATCTGCTGTTACTAGTACAGGTGAAGTTTACATGTGGGATGGGAAGAATGGTAAAGATATTGCACCATCTCTTTCTCGCCTCCACAACTTGAAAAGGGCAACCACAGTTGCTGTTGGCGAAACTCATCTTCTGGTTGTTGGTTCTCTGTATCATCCTGCATATGCTCCTATTGTGCTTAAGAAGTCTCAGACACTGCAAGCTGATAAATGTAGGGAAGAAGAAAATGAAGAACTGGATGAGGGTTTTATGTTTGACGATGTGGAATCCGTGAACGTGTTGCAATCCGTGCAATACGATAATCCTAAGGAGAGGATAGTGCCTAGCTTGAAAAGTTTATGCGAGAAGGTGGCCGCGGAGTGTATTGTAGAGCCACGAAATGCTATTCAATTGCTTGAAATTGCGGATTCGCTTGGAGCAGAGGATCTTAAGAAGTACTGTGAGGACATTGTGATTCGAAACCTTGACTTTATTTTGACATTTTCTCCCCAATCTATTGCAAATACATCACCTGATGTTCTTGCCAATCTTGAGAAATTACTGGATGACAGATCATCTGAAACATGGAGCTCCCGACCACTTCCAACCCCAACAGCCACATTTCCTGTTGTTATTGACAGTGAAGAGGAGGAAAGTGAGAGCGACATTCTAAGAACTCGTGACAGCCATGTGAAACACTTTTCCAGTATTGGTGGTACTCGAATGGATTCATTCTTGCAACCAGAAGATGAGCTGACTCAACACAATTCCAAAGAAGTCCGAGCTTTGAGGAAAAAGTTGCAACAAATTGAGATACTTGAAGCAAAACAATCGAGAGGACAACTTCTTGATGGTCAGCAAATAGCAAAACTTCAAAAGAAACTAGATATCGAAAGTTCACTGGTAGAACTTGGTATTCCTGTGGAAGAGTTTCCAGAGGCAAAAGCAACAACAGCTTTACCGCTAGAAGGAAAGGCCAACAAGAAGGGAAAAAAGAAGAAAAAGGGTAATCAGAGATTTGTACAAGTTGAGACATTCCCTGAATTTGGTGAAGTTAAAGTGGAAATAGATACGATGCAAGACAAAGAAATTGAAGAAATCTGTGAAGCTATCAAGCCAAAGGGTGGCAAAACCATGTTGGATACGACGATGATTAGTGGGTTCCCCAAAGAATCAGACTTTGTCTCACTCTCGCAAAAGAAAGATAATCCACCCGATTCGCCGAGAAGCAAGAAACTTGCAACGGCAGCAAACAAGAAGAAGAACAGAAAGGGTGGGCTTTCCATGTTCTTGACTGGTGCTCTTGATGATGTCCCTAAACCTGTTGTTGCTCCTCCACCAAGGCCTAAGATTGAAGGTCCTGTGTGGGGTGGGGCTAAGATTTCTAAAGGATTATCTTCCCTGCGGGATATTCAAGATGAACAAAGCAAGACCCGCTCTCATGAACCTGTTAGGACTACTAAAAATCAGTCAGGGGATGATTCTCCTGGTAAAAGTGAAGGAAAGATATTACTGAGTTCCTTCTTGACTTCGAAGCCGATTCCGATGGAACCAGCCAAAAGTTTGCAGCAATCTGATGTGGAAAAAGGAACTCCTCCTTGGGCTTCCTCTGAAACTCCGCGTAAACTGTCTCGACCTTCTCTCAGAGATATCCAGATGCAGGAGGTGAAGAAGCAACAGTCTCTGTCCCACAGTCCAAAGACAAAAACATCAGGCTTCACAGTCGCAACCGGGCAAGGATCTCCATCAGATTCGCCTGGAACTAATCGCTGGTTCAAACCAGAGATAGATGCTCCATCAGCAATCCGATCAATCCAGATAGAAGAAAAAGCCATGAAGGATCTCCGCCGCTTCTACAGTAGCGTGAAGGTAGTCAGAAACCAGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ank_4 Ank_5 RCC1

Protein Analysis

1078

Amino Acids

118.28

Weight (kDa)

9.18

Isoelectric Point (pI)

45.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ank_2 PF12796 44 - 126 1.3e-11 Ankyrin repeats (3 copies)
Ank_5 PF13857 52 - 103 3.2e-09 Ankyrin repeats (many copies)
Ank PF00023 61 - 92 1.7e-08 Ankyrin repeat
Ank_4 PF13637 73 - 116 6.8e-08 Ankyrin repeats (many copies)
WD40_RLD PF25390 144 - 222 2.4e-14 RCC1-like domain
RCC1 PF00415 154 - 201 6.7e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 205 - 259 1.8e-08 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 235 - 430 7e-41 RCC1-like domain
RCC1_2 PF13540 247 - 276 1.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 264 - 311 1.9e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 315 - 365 6.4e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 353 - 375 5.5e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 48
Acc65I GGTACC 1 cut(s) 517
AccB1I GGYRCC 1 cut(s) 517
AccB7I CCANNNNNTGG 1 cut(s) 2471
AccBSI CCGCTC 1 cut(s) 2784
AccI GTMKAC 1 cut(s) 612
AccII CGCG 3 cut(s) 329, 1724, 2968
AclWI GGATC 6 cut(s) 79, 254, 727, 1800, 3094, 3195
AcoI YGGCCR 3 cut(s) 319, 637, 1719
AcsI RAATTY 5 cut(s) 166, 656, 1156, 1186, 2390
AcvI CACGTG 1 cut(s) 618
AfaI GTAC 9 cut(s) 519, 598, 791, 1106, 1239, 1387, 1805, 2065, 2370
AfiI CCNNNNNNNGG 6 cut(s) 328, 2315, 2393, 2471, 2714, 3007
AflII CTTAAG 2 cut(s) 1547, 1796
AflIII ACRYGT 5 cut(s) 505, 615, 1138, 1401, 1644
AgeI ACCGGT 1 cut(s) 394
AhlI ACTAGT 1 cut(s) 1382
AjiI CACGTC 1 cut(s) 1139
AjnI CCWGG 5 cut(s) 520, 699, 1109, 2833, 3103
AjuI GAANNNNNNNTTGG 4 cut(s) 957, 989, 2929, 2961
AleI CACNNNNGTG 1 cut(s) 1079
Alw21I GWGCWC 2 cut(s) 1940, 2650
AlwI GGATC 6 cut(s) 79, 254, 727, 1800, 3094, 3195
AlwNI CAGNNNCTG 3 cut(s) 1481, 1564, 3031
AoxI GGCC 5 cut(s) 319, 637, 1719, 2322, 2690
ApoI RAATTY 5 cut(s) 166, 656, 1156, 1186, 2390
AsiGI ACCGGT 1 cut(s) 394
Asp700I GAANNNNTTC 2 cut(s) 2074, 2277
Asp718I GGTACC 1 cut(s) 517
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 413, 2705
AsuC2I CCSGG 2 cut(s) 1153, 3079
AsuHPI GGTGA 8 cut(s) 293, 715, 947, 1138, 1403, 1869, 2408, 3025
AsuII TTCGAA 2 cut(s) 1825, 2879
AsuNHI GCTAGC 1 cut(s) 335
AvaII GGWCC 2 cut(s) 413, 2705
AxyI CCTNAGG 1 cut(s) 1674
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 517
BanII GRGCYC 1 cut(s) 1940
BauI CACGAG 1 cut(s) 2025
BbrPI CACGTG 1 cut(s) 618
BbsI GAAGAC 3 cut(s) 155, 290, 381
Bbv12I GWGCWC 2 cut(s) 1940, 2650
BceAI ACGGC 4 cut(s) 711, 902, 1065, 2607
BcgI CGANNNNNNTGC 4 cut(s) 32, 66, 2160, 2194
BciT130I CCWGG 5 cut(s) 522, 701, 1111, 2835, 3105
BciVI GTATCC 2 cut(s) 832, 2482
BcnI CCSGG 2 cut(s) 1153, 3079
BcuI ACTAGT 1 cut(s) 1382
BfmI CTRYAG 4 cut(s) 681, 771, 897, 3202
BfoI RGCGCY 1 cut(s) 258
BfrI CTTAAG 2 cut(s) 1547, 1796
BfuAI ACCTGC 1 cut(s) 48
BfuI GTATCC 2 cut(s) 832, 2482
BlpI GCTNAGC 1 cut(s) 750
BmcAI AGTACT 2 cut(s) 598, 1805
Bme1390I CCNGG 7 cut(s) 522, 701, 1111, 1153, 2835, 3079, 3105
Bme18I GGWCC 2 cut(s) 413, 2705
BmgBI CACGTC 1 cut(s) 1139
BmgT120I GGNCC 2 cut(s) 413, 2705
BmiI GGNNCC 5 cut(s) 519, 802, 985, 2510, 2898
BmrFI CCNGG 7 cut(s) 522, 701, 1111, 1153, 2835, 3079, 3105
BmrI ACTGGG 1 cut(s) 1375
BmsI GCATC 9 cut(s) 256, 944, 1007, 1067, 1295, 1379, 2412, 2994, 3127
BmtI GCTAGC 1 cut(s) 339
BmuI ACTGGG 1 cut(s) 1375
BpiI GAAGAC 3 cut(s) 155, 290, 381
Bpu10I CCTNAGC 1 cut(s) 423
Bpu1102I GCTNAGC 1 cut(s) 750
Bpu14I TTCGAA 2 cut(s) 1825, 2879
BpuEI CTTGAG 2 cut(s) 128, 1919
BpuMI CCSGG 2 cut(s) 1153, 3079
BsaAI YACGTR 1 cut(s) 618
BsaBI GATNNNNATC 1 cut(s) 3091
BsaI GGTCTC 4 cut(s) 191, 412, 568, 1195
BsaJI CCNNGG 6 cut(s) 521, 643, 1110, 1722, 2687, 2945
BsaWI WCCGGW 1 cut(s) 394
BsaXI ACNNNNNCTCC 2 cut(s) 1837, 1867
Bsc4I CCNNNNNNNGG 6 cut(s) 328, 2315, 2393, 2471, 2714, 3007
Bse118I RCCGGY 1 cut(s) 394
Bse1I ACTGG 9 cut(s) 157, 416, 499, 1370, 1608, 1914, 2052, 2253, 2647
Bse21I CCTNAGG 1 cut(s) 1674
Bse8I GATNNNNATC 1 cut(s) 3091
BseBI CCWGG 5 cut(s) 522, 701, 1111, 2835, 3105
BseDI CCNNGG 6 cut(s) 521, 643, 1110, 1722, 2687, 2945
BseGI GGATG 9 cut(s) 280, 649, 790, 959, 1414, 1522, 1612, 1918, 2830
BseJI GATNNNNATC 1 cut(s) 3091
BseLI CCNNNNNNNGG 6 cut(s) 328, 2315, 2393, 2471, 2714, 3007
BseMII CTCAG 8 cut(s) 366, 423, 437, 857, 1008, 1571, 2852, 3004
BseNI ACTGG 9 cut(s) 157, 416, 499, 1370, 1608, 1914, 2052, 2253, 2647
BseRI GAGGAG 6 cut(s) 9, 39, 183, 2009, 2670, 2931
BseYI CCCAGC 2 cut(s) 462, 1169
BsgI GTGCAG 1 cut(s) 1310
Bsh1236I CGCG 3 cut(s) 329, 1724, 2968
BshFI GGCC 5 cut(s) 321, 639, 1721, 2324, 2692
BshNI GGYRCC 1 cut(s) 517
BshTI ACCGGT 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 1940, 2650
BsiSI CCGG 3 cut(s) 395, 1153, 3078
BslFI GGGAC 2 cut(s) 2645, 3019
BslI CCNNNNNNNGG 6 cut(s) 328, 2315, 2393, 2471, 2714, 3007
BsmFI GGGAC 2 cut(s) 2645, 3019
BsmI GAATGC 3 cut(s) 181, 1268, 1318
BsnI GGCC 5 cut(s) 321, 639, 1721, 2324, 2692
Bso31I GGTCTC 4 cut(s) 191, 412, 568, 1195
Bsp119I TTCGAA 2 cut(s) 1825, 2879
Bsp1286I GDGCHC 2 cut(s) 1940, 2650
Bsp1407I TGTACA 3 cut(s) 789, 1104, 2368
Bsp143I GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
Bsp1720I GCTNAGC 1 cut(s) 750
BspANI GGCC 5 cut(s) 321, 639, 1721, 2324, 2692
BspCNI CTCAG 8 cut(s) 365, 422, 436, 856, 1007, 1570, 2853, 3003
BspFNI CGCG 3 cut(s) 329, 1724, 2968
BspHI TCATGA 1 cut(s) 2788
BspLI GGNNCC 5 cut(s) 519, 802, 985, 2510, 2898
BspMAI CTGCAG 2 cut(s) 685, 901
BspMI ACCTGC 1 cut(s) 48
BspOI GCTAGC 1 cut(s) 339
BspPI GGATC 6 cut(s) 79, 254, 727, 1800, 3094, 3195
BspT104I TTCGAA 2 cut(s) 1825, 2879
BspT107I GGYRCC 1 cut(s) 517
BspTI CTTAAG 2 cut(s) 1547, 1796
BspTNI GGTCTC 4 cut(s) 191, 412, 568, 1195
BsrBI CCGCTC 1 cut(s) 2784
BsrFI RCCGGY 1 cut(s) 394
BsrGI TGTACA 3 cut(s) 789, 1104, 2368
BsrI ACTGG 9 cut(s) 157, 416, 499, 1370, 1608, 1914, 2052, 2253, 2647
BssAI RCCGGY 1 cut(s) 394
BssECI CCNNGG 6 cut(s) 521, 643, 1110, 1722, 2687, 2945
BssMI GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
BssSI CACGAG 1 cut(s) 2025
BssT1I CCWWGG 3 cut(s) 643, 2687, 2945
Bst2BI CACGAG 1 cut(s) 2025
Bst2UI CCWGG 5 cut(s) 522, 701, 1111, 2835, 3105
Bst6I CTCTTC 3 cut(s) 1212, 1986, 2268
BstAFI CTTAAG 2 cut(s) 1547, 1796
BstAPI GCANNNNNTGC 3 cut(s) 1226, 1324, 1657
BstAUI TGTACA 3 cut(s) 789, 1104, 2368
BstBAI YACGTR 1 cut(s) 618
BstBI TTCGAA 2 cut(s) 1825, 2879
BstC8I GCNNGC 5 cut(s) 246, 253, 337, 437, 1569
BstDSI CCRYGG 1 cut(s) 1722
BstF5I GGATG 9 cut(s) 280, 649, 790, 959, 1414, 1522, 1612, 1918, 2830
BstFNI CGCG 3 cut(s) 329, 1724, 2968
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 8 cut(s) 74, 262, 722, 1795, 1922, 3089, 3158, 3190
BstMBI GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
BstNI CCWGG 5 cut(s) 522, 701, 1111, 2835, 3105
BstNSI RCATGY 2 cut(s) 509, 1405
BstSCI CCNGG 7 cut(s) 520, 699, 1109, 1151, 2833, 3077, 3103
BstSFI CTRYAG 4 cut(s) 681, 771, 897, 3202
BstUI CGCG 3 cut(s) 329, 1724, 2968
BstV2I GAAGAC 3 cut(s) 155, 290, 381
BstX2I RGATCY 5 cut(s) 71, 719, 1792, 3086, 3187
BstYI RGATCY 5 cut(s) 71, 719, 1792, 3086, 3187
Bsu36I CCTNAGG 1 cut(s) 1674
BsuI GTATCC 2 cut(s) 832, 2482
BsuRI GGCC 5 cut(s) 321, 639, 1721, 2324, 2692
BtgI CCRYGG 1 cut(s) 1722
BtrI CACGTC 1 cut(s) 1139
BtsCI GGATG 9 cut(s) 280, 649, 790, 959, 1414, 1522, 1612, 1918, 2830
BtsI GCAGTG 3 cut(s) 536, 690, 1562
BtsIMutI CAGTG 7 cut(s) 423, 536, 690, 759, 1562, 1993, 2246
BveI ACCTGC 1 cut(s) 48
Cac8I GCNNGC 5 cut(s) 246, 253, 337, 437, 1569
CaiI CAGNNNCTG 3 cut(s) 1481, 1564, 3031
CciI TCATGA 1 cut(s) 2788
CfoI GCGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 394
Cfr13I GGNCC 2 cut(s) 413, 2705
Cfr42I CCGCGG 1 cut(s) 1725
Csp6I GTAC 9 cut(s) 518, 597, 790, 1105, 1238, 1386, 1804, 2064, 2369
CspAI ACCGGT 1 cut(s) 394
CviQI GTAC 9 cut(s) 518, 597, 790, 1105, 1238, 1386, 1804, 2064, 2369
DpnI GATC 8 cut(s) 73, 261, 721, 1794, 1921, 3088, 3157, 3189
DpnII GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
DraI TTTAAA 1 cut(s) 1161
EaeI YGGCCR 3 cut(s) 319, 637, 1719
Eam1104I CTCTTC 3 cut(s) 1212, 1986, 2268
EarI CTCTTC 3 cut(s) 1212, 1986, 2268
EciI GGCGGA 1 cut(s) 3182
Ecl136II GAGCTC 1 cut(s) 1938
Eco130I CCWWGG 3 cut(s) 643, 2687, 2945
Eco147I AGGCCT 1 cut(s) 2692
Eco24I GRGCYC 1 cut(s) 1940
Eco31I GGTCTC 4 cut(s) 191, 412, 568, 1195
Eco32I GATATC 3 cut(s) 708, 2236, 2998
Eco47I GGWCC 2 cut(s) 413, 2705
Eco53kI GAGCTC 1 cut(s) 1938
Eco72I CACGTG 1 cut(s) 618
Eco81I CCTNAGG 1 cut(s) 1674
EcoICRI GAGCTC 1 cut(s) 1938
EcoO109I RGGNCCY 1 cut(s) 2705
EcoRII CCWGG 5 cut(s) 520, 699, 1109, 2833, 3103
EcoRV GATATC 3 cut(s) 708, 2236, 2998
EcoT14I CCWWGG 3 cut(s) 643, 2687, 2945
EcoT38I GRGCYC 1 cut(s) 1940
ErhI CCWWGG 3 cut(s) 643, 2687, 2945
FalI AAGNNNNNCTT 2 cut(s) 957, 989
FaqI GGGAC 2 cut(s) 2645, 3019
FauI CCCGC 7 cut(s) 704, 773, 863, 1222, 1348, 2745, 2789
FauNDI CATATG 1 cut(s) 1531
FblI GTMKAC 1 cut(s) 612
FokI GGATG 9 cut(s) 287, 636, 797, 966, 1421, 1509, 1619, 1925, 2837
FriOI GRGCYC 1 cut(s) 1940
GlaI GCGC 1 cut(s) 256
GsaI CCCAGC 2 cut(s) 466, 1173
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 5 cut(s) 321, 639, 1721, 2324, 2692
HapII CCGG 3 cut(s) 395, 1153, 3078
HhaI GCGC 1 cut(s) 257
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HpaII CCGG 3 cut(s) 395, 1153, 3078
HphI GGTGA 8 cut(s) 293, 715, 947, 1138, 1403, 1869, 2408, 3025
Hpy99I CGWCG 1 cut(s) 2497
HpyCH4IV ACGT 3 cut(s) 617, 1138, 1644
HpySE526I ACGT 3 cut(s) 617, 1138, 1644
HspAI GCGC 1 cut(s) 255
KpnI GGTACC 1 cut(s) 521
KspI CCGCGG 1 cut(s) 1725
Kzo9I GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
LmnI GCTCC 6 cut(s) 1540, 1784, 1935, 1943, 2683, 3145
LweI GCATC 9 cut(s) 256, 944, 1007, 1067, 1295, 1379, 2412, 2994, 3127
MaeII ACGT 3 cut(s) 617, 1138, 1644
MaeIII GTNAC 4 cut(s) 862, 1126, 1378, 2027
MalI GATC 8 cut(s) 73, 261, 721, 1794, 1921, 3088, 3157, 3189
MbiI CCGCTC 1 cut(s) 2784
MboI GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
MfeI CAATTG 1 cut(s) 1757
MflI RGATCY 5 cut(s) 71, 719, 1792, 3086, 3187
MhlI GDGCHC 2 cut(s) 1940, 2650
MlsI TGGCCA 1 cut(s) 321
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 4 cut(s) 344, 1123, 1286, 2098
MmeI TCCRAC 4 cut(s) 269, 1014, 1976, 2466
Mox20I TGGCCA 1 cut(s) 321
MroXI GAANNNNTTC 2 cut(s) 2074, 2277
MscI TGGCCA 1 cut(s) 321
MseI TTAA 6 cut(s) 170, 555, 1160, 1548, 1797, 2403
MslI CAYNNNNRTG 1 cut(s) 1079
Msp20I TGGCCA 1 cut(s) 321
MspA1I CMGCKG 4 cut(s) 462, 569, 1355, 1724
MspCI CTTAAG 2 cut(s) 1547, 1796
MspI CCGG 3 cut(s) 395, 1153, 3078
MspR9I CCNGG 7 cut(s) 522, 701, 1111, 1153, 2835, 3079, 3105
MunI CAATTG 1 cut(s) 1757
Mva1269I GAATGC 3 cut(s) 181, 1268, 1318
MvaI CCWGG 5 cut(s) 522, 701, 1111, 2835, 3105
MvnI CGCG 3 cut(s) 329, 1724, 2968
NciI CCSGG 2 cut(s) 1153, 3079
NdeI CATATG 1 cut(s) 1531
NdeII GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
NheI GCTAGC 1 cut(s) 335
NlaIV GGNNCC 5 cut(s) 519, 802, 985, 2510, 2898
NmeAIII GCCGAG 1 cut(s) 2595
NmuCI GTSAC 3 cut(s) 862, 1126, 2027
NspI RCATGY 2 cut(s) 509, 1405
NspV TTCGAA 2 cut(s) 1825, 2879
OliI CACNNNNGTG 1 cut(s) 1079
PagI TCATGA 1 cut(s) 2788
PceI AGGCCT 1 cut(s) 2692
PciI ACATGT 2 cut(s) 505, 1401
PctI GAATGC 3 cut(s) 181, 1268, 1318
PdmI GAANNNNTTC 2 cut(s) 2074, 2277
PflFI GACNNNGTC 1 cut(s) 2528
PflMI CCANNNNNTGG 1 cut(s) 2471
PfoI TCCNGGA 1 cut(s) 1151
PinAI ACCGGT 1 cut(s) 394
PleI GAGTC 4 cut(s) 344, 1123, 1286, 2098
PmaCI CACGTG 1 cut(s) 618
PmlI CACGTG 1 cut(s) 618
PpsI GAGTC 4 cut(s) 344, 1123, 1286, 2098
Ppu21I YACGTR 1 cut(s) 618
PpuMI RGGWCCY 1 cut(s) 2705
PscI ACATGT 2 cut(s) 505, 1401
Psp124BI GAGCTC 1 cut(s) 1940
Psp5II RGGWCCY 1 cut(s) 2705
Psp6I CCWGG 5 cut(s) 520, 699, 1109, 2833, 3103
PspCI CACGTG 1 cut(s) 618
PspFI CCCAGC 2 cut(s) 462, 1169
PspGI CCWGG 5 cut(s) 520, 699, 1109, 2833, 3103
PspN4I GGNNCC 5 cut(s) 519, 802, 985, 2510, 2898
PspPI GGNCC 2 cut(s) 413, 2705
PspPPI RGGWCCY 1 cut(s) 2705
PstI CTGCAG 2 cut(s) 685, 901
PstNI CAGNNNCTG 3 cut(s) 1481, 1564, 3031
PsuI RGATCY 5 cut(s) 71, 719, 1792, 3086, 3187
PsyI GACNNNGTC 1 cut(s) 2528
PvuII CAGCTG 1 cut(s) 462
RsaI GTAC 9 cut(s) 519, 598, 791, 1106, 1239, 1387, 1805, 2065, 2370
RsaNI GTAC 9 cut(s) 518, 597, 790, 1105, 1238, 1386, 1804, 2064, 2369
RseI CAYNNNNRTG 1 cut(s) 1079
SacI GAGCTC 1 cut(s) 1940
SacII CCGCGG 1 cut(s) 1725
SaqAI TTAA 6 cut(s) 170, 555, 1160, 1548, 1797, 2403
Sau3AI GATC 8 cut(s) 71, 259, 719, 1792, 1919, 3086, 3155, 3187
Sau96I GGNCC 2 cut(s) 413, 2705
ScaI AGTACT 2 cut(s) 598, 1805
SchI GAGTC 4 cut(s) 344, 1123, 1286, 2098
ScrFI CCNGG 7 cut(s) 522, 701, 1111, 1153, 2835, 3079, 3105
SduI GDGCHC 2 cut(s) 1940, 2650
SfaNI GCATC 9 cut(s) 256, 944, 1007, 1067, 1295, 1379, 2412, 2994, 3127
SfcI CTRYAG 4 cut(s) 681, 771, 897, 3202
Sfr303I CCGCGG 1 cut(s) 1725
SfuI TTCGAA 2 cut(s) 1825, 2879
SgrBI CCGCGG 1 cut(s) 1725
SinI GGWCC 2 cut(s) 413, 2705
SmiMI CAYNNNNRTG 1 cut(s) 1079
SmlI CTYRAG 4 cut(s) 143, 1547, 1796, 1898
SmoI CTYRAG 4 cut(s) 143, 1547, 1796, 1898
SpeI ACTAGT 1 cut(s) 1382
SseBI AGGCCT 1 cut(s) 2692
SstI GAGCTC 1 cut(s) 1940
StuI AGGCCT 1 cut(s) 2692
StyD4I CCNGG 7 cut(s) 520, 699, 1109, 1151, 2833, 3077, 3103
StyI CCWWGG 3 cut(s) 643, 2687, 2945
TaiI ACGT 3 cut(s) 620, 1141, 1647
TaqI TCGA 8 cut(s) 1195, 1210, 1825, 2068, 2180, 2238, 2879, 2980
TatI WGTACW 6 cut(s) 596, 789, 1104, 1385, 1803, 2368
TauI GCSGC 4 cut(s) 642, 746, 1724, 3198
Tru1I TTAA 6 cut(s) 170, 555, 1160, 1548, 1797, 2403
Tru9I TTAA 6 cut(s) 170, 555, 1160, 1548, 1797, 2403
TscAI CASTG 7 cut(s) 423, 543, 690, 766, 1569, 1993, 2253
TseFI GTSAC 3 cut(s) 862, 1126, 2027
Tsp45I GTSAC 3 cut(s) 862, 1126, 2027
TspGWI ACGGA 2 cut(s) 1627, 1645
TspRI CASTG 7 cut(s) 423, 543, 690, 766, 1569, 1993, 2253
Tth111I GACNNNGTC 1 cut(s) 2528
Van91I CCANNNNNTGG 1 cut(s) 2471
Vha464I CTTAAG 2 cut(s) 1547, 1796
VpaK11BI GGWCC 2 cut(s) 413, 2705
XapI RAATTY 5 cut(s) 166, 656, 1156, 1186, 2390
XbaI TCTAGA 1 cut(s) 370
XceI RCATGY 2 cut(s) 509, 1405
XcmI CCANNNNNNNNNTGG 2 cut(s) 491, 707
XmiI GTMKAC 1 cut(s) 612
XmnI GAANNNNTTC 2 cut(s) 2074, 2277
ZrmI AGTACT 2 cut(s) 598, 1805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.