Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004406

Physical Location & Seq

Genomic Coordinates Forward (+)

28725676 .. 28727279

Gene Structure 1604 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0285400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGACACATGGAAACGTAACCTTCCAGTGGTCCAACCTTTCTACGTCGTCAAGTGCAACCCACACCCGAATCTCCTCGCCACTTTGGTGGCTCAAGGTTCAAGTTTCGACTGTGCAAGTCCCTCTGAGATTGAGTCCATTTTAGCTCTCGGAGTTTCTCCGGATCACATCATCTATACTAATCCCTGCAAAGCTAGCTCTCACATCAAGTACGCTGCTGAAGTTGGCGTCAACCTAACCACCTATGACTCGCAGAGTTGGCCAAGGATCTCAAAGAGCAATGGAGTGGCCAAGGTTCGAGCCTCGGTGACCAAGGTAGAGTGGGAACTGGGAAGAGACGGAAGATTCCAGAAAAATACCCAAAATATCGCCGAAGAGCCAGGTCGGTTTTTTGCAGAGACCGCTTTCACGCTTGTCACCAACATCATCGGGAAGCGTGTGAGAGGGGATGACAGACAATACTGGATCAACGAAGGGTTTTATGGGTCCATGATGCTTGCGGATCCTAAAACCCTACTTGAATCATGCATTGCTCTAAAATGCATGTCCAATAACAGTGATGGCATCGAGAAGAATCCAGTCTTGATGGTATGTGGCAAAGCTACTGGCGGTGCTCGCACTTACAGTTCGACTGTGTTTGTTCCGACGTGTGATTCGGCTGACAAGGTGTTGGAGGGTGACCAGTTATCAGAACTAGAGGTGAATAATTTGCTGGTGTTTCGCAACATGGGTGCTTATACGTCGGCGTGTAGCAGCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ank_4 Ank_5 RCC1

Protein Analysis

253

Amino Acids

27.76

Weight (kDa)

6.43

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Orn_Arg_deC_N	PF02784	2 - 86	5.9e-26	Pyridoxal-dependent decarboxylase, pyridoxal binding domain
Orn_DAP_Arg_deC	PF00278	32 - 244	6.5e-11	Pyridoxal-dependent decarboxylase, C-terminal sheet domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004406)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03790 AT3G03790 AT3G03790
fragaria_vesca	FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360 FvH4_1g28360
malus_domestica	MD12G1006900.v1.1 MD14G1004600.v1.1
prunus_persica	Prupe.7G007400_v2.0.a1 Prupe.7G007400_v2.0.a1
pyrus_communis	pycom12g00500 pycom14g00310
rosa_chinensis	RchiOBHm_Chr3g0496671
rosa_laevigata	RLG00000022512
rosa_multiflora	Rmu_sc0006176.1_g000007
rosa_roxburghii	Rroxscaffold_6G00388860
rosa_rugosa	Rorug03G0285400 Rorug03G0285500
rosa_samantha	Rh3AG330500 Rh3BG366500 Rh3CG363200 Rh3DG366600
rosa_wichuraiana	Rw3G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	160
AciI	CCGC	3 cut(s)	402, 500, 609
AclWI	GGATC	5 cut(s)	171, 275, 473, 497, 510
AcoI	YGGCCR	2 cut(s)	260, 288
AcuI	CTGAAG	1 cut(s)	240
AcyI	GRCGYC	1 cut(s)	228
AfaI	GTAC	1 cut(s)	212
AfiI	CCNNNNNNNGG	1 cut(s)	28
AflIII	ACRYGT	1 cut(s)	647
AgsI	TTSAA	2 cut(s)	102, 521
AjiI	CACGTC	1 cut(s)	648
AjnI	CCWGG	1 cut(s)	379
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	4 cut(s)	146, 194, 198, 602
AluI	AGCT	4 cut(s)	146, 194, 198, 602
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	2 cut(s)	330, 392
AlwI	GGATC	5 cut(s)	171, 275, 473, 497, 510
Aor13HI	TCCGGA	1 cut(s)	160
AoxI	GGCC	2 cut(s)	260, 288
ApeKI	GCWGC	2 cut(s)	215, 753
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
AspS9I	GGNCC	2 cut(s)	31, 486
AsuHPI	GGTGA	4 cut(s)	319, 409, 689, 712
AsuNHI	GCTAGC	1 cut(s)	194
AvaII	GGWCC	2 cut(s)	31, 486
BalI	TGGCCA	2 cut(s)	262, 290
BamHI	GGATCC	1 cut(s)	502
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	202
BccI	CCATC	2 cut(s)	554, 580
BciT130I	CCWGG	1 cut(s)	381
BcoDI	GTCTC	2 cut(s)	330, 392
BfaI	CTAG	3 cut(s)	195, 695, 760
BisI	GCNGC	2 cut(s)	216, 754
BlsI	GCNGC	2 cut(s)	217, 755
Bme1390I	CCNGG	1 cut(s)	381
Bme18I	GGWCC	2 cut(s)	31, 486
BmgBI	CACGTC	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	31, 486
BmiI	GGNNCC	2 cut(s)	487, 504
BmrFI	CCNGG	1 cut(s)	381
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	2 cut(s)	483, 573
BmtI	GCTAGC	1 cut(s)	198
BmuI	ACTGGG	1 cut(s)	338
BpuEI	CTTGAG	1 cut(s)	78
BsaHI	GRCGYC	1 cut(s)	228
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	4 cut(s)	263, 291, 303, 312
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	6 cut(s)	26, 333, 467, 578, 610, 682
Bse3DI	GCAATG	2 cut(s)	286, 528
BseAI	TCCGGA	1 cut(s)	160
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	4 cut(s)	263, 291, 303, 312
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	2 cut(s)	286, 528
BseMII	CTCAG	1 cut(s)	117
BseNI	ACTGG	6 cut(s)	26, 333, 467, 578, 610, 682
BseRI	GAGGAG	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	202
BshFI	GGCC	2 cut(s)	262, 290
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	105
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	2 cut(s)	330, 392
BsmBI	CGTCTC	1 cut(s)	330
BsmFI	GGGAC	1 cut(s)	105
BsnI	GGCC	2 cut(s)	262, 290
Bso31I	GGTCTC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp13I	TCCGGA	1 cut(s)	160
Bsp143I	GATC	4 cut(s)	163, 267, 465, 502
BspACI	CCGC	3 cut(s)	402, 500, 609
BspANI	GGCC	2 cut(s)	262, 290
BspCNI	CTCAG	1 cut(s)	118
BspEI	TCCGGA	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	487, 504
BspOI	GCTAGC	1 cut(s)	198
BspPI	GGATC	5 cut(s)	171, 275, 473, 497, 510
BspQI	GCTCTTC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	392
BsrDI	GCAATG	2 cut(s)	286, 528
BsrI	ACTGG	6 cut(s)	26, 333, 467, 578, 610, 682
BssECI	CCNNGG	4 cut(s)	263, 291, 303, 312
BssMI	GATC	4 cut(s)	163, 267, 465, 502
BssNI	GRCGYC	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	263, 291, 312
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	113, 557, 626, 634
Bst6I	CTCTTC	2 cut(s)	328, 369
BstACI	GRCGYC	1 cut(s)	228
BstC8I	GCNNGC	3 cut(s)	196, 498, 616
BstDEI	CTNAG	1 cut(s)	126
BstEII	GGTNACC	2 cut(s)	307, 677
BstF5I	GGATG	1 cut(s)	454
BstKTI	GATC	4 cut(s)	166, 270, 468, 505
BstMAI	GTCTC	2 cut(s)	330, 392
BstMBI	GATC	4 cut(s)	163, 267, 465, 502
BstMWI	GCNNNNNNNGC	4 cut(s)	195, 259, 401, 615
BstNI	CCWGG	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	547
BstPI	GGTNACC	2 cut(s)	307, 677
BstSCI	CCNGG	1 cut(s)	379
BstV1I	GCAGC	1 cut(s)	202
BstX2I	RGATCY	2 cut(s)	267, 502
BstXI	CCANNNNNNTGG	1 cut(s)	88
BstYI	RGATCY	2 cut(s)	267, 502
BsuRI	GGCC	2 cut(s)	262, 290
BtrI	CACGTC	1 cut(s)	648
BtsCI	GGATG	1 cut(s)	454
BtsIMutI	CAGTG	2 cut(s)	33, 562
Cac8I	GCNNGC	3 cut(s)	196, 498, 616
Cfr13I	GGNCC	2 cut(s)	31, 486
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	211
CviAII	CATG	5 cut(s)	9, 490, 525, 544, 727
CviQI	GTAC	1 cut(s)	211
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	4 cut(s)	165, 269, 467, 504
DpnII	GATC	4 cut(s)	163, 267, 465, 502
EaeI	YGGCCR	2 cut(s)	260, 288
Eam1104I	CTCTTC	2 cut(s)	328, 369
EarI	CTCTTC	2 cut(s)	328, 369
Eco130I	CCWWGG	3 cut(s)	263, 291, 312
Eco31I	GGTCTC	1 cut(s)	392
Eco47I	GGWCC	2 cut(s)	31, 486
Eco57I	CTGAAG	1 cut(s)	240
Eco91I	GGTNACC	2 cut(s)	307, 677
EcoO65I	GGTNACC	2 cut(s)	307, 677
EcoRII	CCWGG	1 cut(s)	379
EcoT14I	CCWWGG	3 cut(s)	263, 291, 312
EcoT22I	ATGCAT	2 cut(s)	530, 545
ErhI	CCWWGG	3 cut(s)	263, 291, 312
Esp3I	CGTCTC	1 cut(s)	330
FaeI	CATG	5 cut(s)	12, 493, 528, 547, 730
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	5 cut(s)	8, 489, 524, 543, 726
Fnu4HI	GCNGC	2 cut(s)	216, 754
FokI	GGATG	1 cut(s)	461
Fsp4HI	GCNGC	2 cut(s)	216, 754
FspBI	CTAG	3 cut(s)	195, 695, 760
GluI	GCNGC	2 cut(s)	216, 754
HaeIII	GGCC	2 cut(s)	262, 290
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	228
Hin1II	CATG	5 cut(s)	12, 493, 528, 547, 730
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	7 cut(s)	70, 134, 248, 345, 521, 574, 653
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	4 cut(s)	319, 409, 689, 712
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	4 cut(s)	127, 152, 645, 691
Hpy188III	TCNNGA	5 cut(s)	161, 349, 430, 568, 583
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	3 cut(s)	50, 649, 745
HpyAV	CCTTC	2 cut(s)	32, 467
HpyCH4III	ACNGT	4 cut(s)	113, 557, 626, 634
HpyCH4IV	ACGT	4 cut(s)	16, 45, 647, 740
HpyCH4V	TGCA	6 cut(s)	57, 116, 189, 395, 528, 543
HpyF10VI	GCNNNNNNNGC	4 cut(s)	195, 259, 401, 615
HpyF3I	CTNAG	1 cut(s)	126
HpySE526I	ACGT	4 cut(s)	16, 45, 647, 740
Hsp92I	GRCGYC	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	12, 493, 528, 547, 730
Kpn2I	TCCGGA	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	163, 267, 465, 502
LguI	GCTCTTC	1 cut(s)	369
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	483, 573
MaeI	CTAG	3 cut(s)	195, 695, 760
MaeII	ACGT	4 cut(s)	16, 45, 647, 740
MaeIII	GTNAC	4 cut(s)	17, 307, 415, 677
MalI	GATC	4 cut(s)	165, 269, 467, 504
MboI	GATC	4 cut(s)	163, 267, 465, 502
MboII	GAAGA	4 cut(s)	345, 354, 386, 583
MflI	RGATCY	2 cut(s)	267, 502
MhlI	GDGCHC	1 cut(s)	616
MlsI	TGGCCA	2 cut(s)	262, 290
MluCI	AATT	1 cut(s)	706
MluNI	TGGCCA	2 cut(s)	262, 290
MlyI	GAGTC	2 cut(s)	143, 242
MmeI	TCCRAC	3 cut(s)	58, 651, 668
MnlI	CCTC	6 cut(s)	86, 133, 313, 437, 667, 691
Mox20I	TGGCCA	2 cut(s)	262, 290
Mph1103I	ATGCAT	2 cut(s)	530, 545
MroI	TCCGGA	1 cut(s)	160
MscI	TGGCCA	2 cut(s)	262, 290
MslI	CAYNNNNRTG	1 cut(s)	86
Msp20I	TGGCCA	2 cut(s)	262, 290
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	4 cut(s)	195, 259, 401, 615
NdeII	GATC	4 cut(s)	163, 267, 465, 502
NheI	GCTAGC	1 cut(s)	194
NlaIII	CATG	5 cut(s)	12, 493, 528, 547, 730
NlaIV	GGNNCC	2 cut(s)	487, 504
NmuCI	GTSAC	3 cut(s)	307, 415, 677
NsiI	ATGCAT	2 cut(s)	530, 545
NspI	RCATGY	1 cut(s)	547
OliI	CACNNNNGTG	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	369
PfeI	GAWTC	5 cut(s)	70, 345, 521, 574, 653
PkrI	GCNGC	2 cut(s)	217, 755
PleI	GAGTC	2 cut(s)	142, 242
PpsI	GAGTC	2 cut(s)	142, 242
Psp6I	CCWGG	1 cut(s)	379
PspEI	GGTNACC	2 cut(s)	307, 677
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	2 cut(s)	487, 504
PspPI	GGNCC	2 cut(s)	31, 486
PsuI	RGATCY	2 cut(s)	267, 502
RsaI	GTAC	1 cut(s)	212
RsaNI	GTAC	1 cut(s)	211
RseI	CAYNNNNRTG	1 cut(s)	86
SapI	GCTCTTC	1 cut(s)	369
SatI	GCNGC	2 cut(s)	216, 754
Sau3AI	GATC	4 cut(s)	163, 267, 465, 502
Sau96I	GGNCC	2 cut(s)	31, 486
SchI	GAGTC	2 cut(s)	143, 242
ScrFI	CCNGG	1 cut(s)	381
SduI	GDGCHC	1 cut(s)	616
SfaNI	GCATC	2 cut(s)	483, 573
SinI	GGWCC	2 cut(s)	31, 486
SmiMI	CAYNNNNRTG	1 cut(s)	86
SmlI	CTYRAG	1 cut(s)	93
SmoI	CTYRAG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	706
SsiI	CCGC	3 cut(s)	402, 500, 609
SspMI	CTAG	3 cut(s)	195, 695, 760
StyD4I	CCNGG	1 cut(s)	379
StyI	CCWWGG	3 cut(s)	263, 291, 312
TaaI	ACNGT	4 cut(s)	113, 557, 626, 634
TaiI	ACGT	4 cut(s)	19, 48, 650, 743
TaqI	TCGA	4 cut(s)	108, 298, 567, 629
TasI	AATT	1 cut(s)	706
TfiI	GAWTC	5 cut(s)	70, 345, 521, 574, 653
TscAI	CASTG	2 cut(s)	33, 562
TseFI	GTSAC	3 cut(s)	307, 415, 677
TseI	GCWGC	2 cut(s)	215, 753
Tsp45I	GTSAC	3 cut(s)	307, 415, 677
TspGWI	ACGGA	1 cut(s)	354
TspRI	CASTG	2 cut(s)	33, 562
VpaK11BI	GGWCC	2 cut(s)	31, 486
XceI	RCATGY	1 cut(s)	547
XspI	CTAG	3 cut(s)	195, 695, 760
Zsp2I	ATGCAT	2 cut(s)	530, 545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.