Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Reverse (-)

1008995 .. 1010573

Gene Structure 1579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G03920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAGACCACCAATGAGAGGCGGCGGGGGTTTCCGTGGAAGGGGAGGACGAGACGGTGGTGGTGGCGGTAGGTTCGGTGGAGGAGGCGGTAGATTCGGTGGAGGAGGAGGACGCTTTGGTGGTGGAGGCGGTCGCTTTGGTGGTTTTAGAGACGAAGGTCCTCCTAGCGAAGTCGTGGAGGTTGCAACTTTCGTTCATGCTTGCGAGGGAGATGCTGTGACCAAACTCTCACAGGAGAAGATTCCTCATTTTAACGCTCCGATCTACCTAGAGAACAAGACTCAGATTGGGAAAGTAGATGAAATCTTTGGCCCAATTAATGAATCTTTGTTTTCTATCAAAATGATGGAAGGTATTGTAGCCACCTCGTATTCTCCAGGAGATAAGTTCTTCATCGACCCTTACAAGCTTTTGCCACTCGCTCGATTCCTTCCTCAGCCAAAGGGTCAGTCAACGGGTGGACGTGGAGGTGCAGGTCGTGGAAGAGGTGATAGTAGAGGTCGTGGAAGAGGTGGATCATTTAGTAGAGGTAGAGGTGCTCCAAGAGGTGGTAGATTTCCACCACGCGGTGGCTCTCGTGGAAGCTTTAGAGGCCGAGGAAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

202

Amino Acids

20.98

Weight (kDa)

11.42

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gar1	PF04410	58 - 144	8.1e-27	Gar1/Naf1 RNA binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	464
AccB7I	CCANNNNNTGG	2 cut(s)	548, 569
AccII	CGCG	1 cut(s)	567
AciI	CCGC	6 cut(s)	21, 24, 66, 87, 129, 567
AclWI	GGATC	1 cut(s)	523
AdeI	CACNNNGTG	1 cut(s)	569
AfiI	CCNNNNNNNGG	5 cut(s)	17, 40, 548, 566, 569
AjiI	CACGTC	1 cut(s)	464
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	2 cut(s)	409, 585
AluI	AGCT	2 cut(s)	409, 585
Alw21I	GWGCWC	1 cut(s)	541
Alw26I	GTCTC	2 cut(s)	45, 144
AlwI	GGATC	1 cut(s)	523
AoxI	GGCC	2 cut(s)	310, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	434, 466
AseI	ATTAAT	1 cut(s)	318
AspS9I	GGNCC	2 cut(s)	158, 311
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	158
BauI	CACGAG	1 cut(s)	576
Bbv12I	GWGCWC	1 cut(s)	541
BbvCI	CCTCAGC	1 cut(s)	435
BccI	CCATC	1 cut(s)	340
BcgI	CGANNNNNNTGC	2 cut(s)	194, 228
BciT130I	CCWGG	1 cut(s)	378
BcoDI	GTCTC	2 cut(s)	45, 144
BfaI	CTAG	2 cut(s)	165, 269
BfuAI	ACCTGC	1 cut(s)	464
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	1 cut(s)	158
BmgBI	CACGTC	1 cut(s)	464
BmgT120I	GGNCC	2 cut(s)	158, 311
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	1 cut(s)	202
BoxI	GACNNNNGTC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	360
Bpu10I	CCTNAGC	1 cut(s)	435
BsaJI	CCNNGG	2 cut(s)	34, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 40, 548, 566, 569
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	34, 595
BseLI	CCNNNNNNNGG	5 cut(s)	17, 40, 548, 566, 569
BseMII	CTCAG	2 cut(s)	296, 449
BseRI	GAGGAG	3 cut(s)	96, 117, 120
BsgI	GTGCAG	1 cut(s)	492
Bsh1236I	CGCG	1 cut(s)	567
Bsh1285I	CGRYCG	1 cut(s)	133
BshFI	GGCC	2 cut(s)	312, 594
BsiEI	CGRYCG	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	541
BslI	CCNNNNNNNGG	5 cut(s)	17, 40, 548, 566, 569
BsmAI	GTCTC	2 cut(s)	45, 144
BsmBI	CGTCTC	2 cut(s)	45, 144
BsnI	GGCC	2 cut(s)	312, 594
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	2 cut(s)	261, 515
BspACI	CCGC	6 cut(s)	21, 24, 66, 87, 129, 567
BspANI	GGCC	2 cut(s)	312, 594
BspCNI	CTCAG	2 cut(s)	295, 448
BspFNI	CGCG	1 cut(s)	567
BspMI	ACCTGC	1 cut(s)	464
BspPI	GGATC	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	34, 595
BssMI	GATC	2 cut(s)	261, 515
BssSI	CACGAG	1 cut(s)	576
Bst2BI	CACGAG	1 cut(s)	576
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	2 cut(s)	478, 502
BstC8I	GCNNGC	1 cut(s)	202
BstDEI	CTNAG	2 cut(s)	282, 435
BstDSI	CCRYGG	1 cut(s)	34
BstFNI	CGCG	1 cut(s)	567
BstKTI	GATC	2 cut(s)	264, 518
BstMAI	GTCTC	2 cut(s)	45, 144
BstMBI	GATC	2 cut(s)	261, 515
BstMCI	CGRYCG	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	591
BstNI	CCWGG	1 cut(s)	378
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	376
BstUI	CGCG	1 cut(s)	567
BsuRI	GGCC	2 cut(s)	312, 594
BtgI	CCRYGG	1 cut(s)	34
BtrI	CACGTC	1 cut(s)	464
BveI	ACCTGC	1 cut(s)	464
Cac8I	GCNNGC	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	158, 311
CseI	GACGC	1 cut(s)	120
CviAII	CATG	1 cut(s)	197
CviJI	RGCY	7 cut(s)	312, 362, 409, 439, 573, 585, 594
CviKI_1	RGCY	7 cut(s)	312, 362, 409, 439, 573, 585, 594
DdeI	CTNAG	2 cut(s)	282, 435
DpnI	GATC	2 cut(s)	263, 517
DpnII	GATC	2 cut(s)	261, 515
DraIII	CACNNNGTG	1 cut(s)	569
Eam1104I	CTCTTC	2 cut(s)	478, 502
EarI	CTCTTC	2 cut(s)	478, 502
Eco47I	GGWCC	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	376
Esp3I	CGTCTC	2 cut(s)	45, 144
FaeI	CATG	1 cut(s)	200
FaiI	YATR	1 cut(s)	198
FatI	CATG	1 cut(s)	196
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	1 cut(s)	22
Fsp4HI	GCNGC	1 cut(s)	22
FspBI	CTAG	2 cut(s)	165, 269
GluI	GCNGC	1 cut(s)	22
GsuI	CTGGAG	1 cut(s)	360
HaeIII	GGCC	2 cut(s)	312, 594
HgaI	GACGC	1 cut(s)	120
Hin1II	CATG	1 cut(s)	200
HincII	GTYRAC	1 cut(s)	453
HindII	GTYRAC	1 cut(s)	453
HindIII	AAGCTT	2 cut(s)	407, 583
HinfI	GANTC	5 cut(s)	93, 241, 280, 323, 426
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	2 cut(s)	453, 461
Hpy188I	TCNGA	2 cut(s)	261, 285
Hpy8I	GTNNAC	2 cut(s)	453, 461
HpyAV	CCTTC	4 cut(s)	33, 149, 344, 440
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	463
HpyCH4V	TGCA	2 cut(s)	185, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	591
HpyF3I	CTNAG	2 cut(s)	282, 435
HpySE526I	ACGT	1 cut(s)	463
Hsp92II	CATG	1 cut(s)	200
Kzo9I	GATC	2 cut(s)	261, 515
LmnI	GCTCC	2 cut(s)	262, 544
LpnPI	CCDG	4 cut(s)	218, 363, 390, 459
LweI	GCATC	1 cut(s)	202
MaeI	CTAG	2 cut(s)	165, 269
MaeII	ACGT	1 cut(s)	463
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	2 cut(s)	263, 517
MboI	GATC	2 cut(s)	261, 515
MboII	GAAGA	4 cut(s)	250, 382, 495, 519
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	274
MseI	TTAA	2 cut(s)	252, 318
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MvnI	CGCG	1 cut(s)	567
MwoI	GCNNNNNNNGC	1 cut(s)	591
NdeII	GATC	2 cut(s)	261, 515
NlaIII	CATG	1 cut(s)	200
NmuCI	GTSAC	1 cut(s)	217
PfeI	GAWTC	4 cut(s)	93, 241, 323, 426
PflMI	CCANNNNNTGG	2 cut(s)	548, 569
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	274
PpsI	GAGTC	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	158
PshAI	GACNNNNGTC	1 cut(s)	156
PshBI	ATTAAT	1 cut(s)	318
Psp5II	RGGWCCY	1 cut(s)	158
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspPI	GGNCC	2 cut(s)	158, 311
PspPPI	RGGWCCY	1 cut(s)	158
SaqAI	TTAA	2 cut(s)	252, 318
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	261, 515
Sau96I	GGNCC	2 cut(s)	158, 311
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	378
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	1 cut(s)	202
SinI	GGWCC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	315
SsiI	CCGC	6 cut(s)	21, 24, 66, 87, 129, 567
SspMI	CTAG	2 cut(s)	165, 269
StyD4I	CCNGG	1 cut(s)	376
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	1 cut(s)	466
TaqI	TCGA	2 cut(s)	396, 424
TasI	AATT	1 cut(s)	315
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	4 cut(s)	93, 241, 323, 426
Tru1I	TTAA	2 cut(s)	252, 318
Tru9I	TTAA	2 cut(s)	252, 318
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	4 cut(s)	185, 315, 336, 382
TspGWI	ACGGA	1 cut(s)	23
Van91I	CCANNNNNTGG	2 cut(s)	548, 569
VpaK11BI	GGWCC	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	318
XspI	CTAG	2 cut(s)	165, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.