Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Forward (+)

24032024 .. 24034422

Gene Structure 2399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g30320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCGACCTCCCAGAGGCGGCGGTAGTTTCAGAGGCCGCGGCGATGGCGGCAGAGGCTTCAGAGGCTGCCGCGGCGGCGGTTTCGGAGGAGGCCGTGGTGGTGGCTTCCGCGACGAAGGCCCTCCTTCGGAAGTTGTGGAGGTTTCGACATTTGTTCATGCATGTGAAGGTGACGCTGTCACAAAGCTCACACATGAGAAGATACCCTATTTCAATGCCCCAATCTATCTGCAGAACAAGACTCAGATAGGCAAAGTTGATGAAATTTTCGGCCCAATTAATGAATCTTACTTCTCAGTCAAAGTGATGGAAGGCATTGTGGCCACTTCATATTCACAGGGTGATAAGTTCTATATTGACCCAGCGAAGCTTCTTCCTCTTGCAAGATTTCTTCCGCAGCCCAAAGGACAGAAACCAGCTTTTTCTCGAGGTGGAGGACGTGGAGGCCGGGGATTTCCAAGGGGAGGCAGGGGACCTCCAAGGGGTGGCAGGGGACCTCCAAGGGGTGGCAGAGGACCTCCAAGGGGTGGGCGTGGCTTCAGGGGCAGAGGGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

187

Amino Acids

19.72

Weight (kDa)

11.15

Isoelectric Point (pI)

30.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gar1	PF04410	45 - 131	7.8e-28	Gar1/Naf1 RNA binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	485, 506, 527
AccII	CGCG	3 cut(s)	39, 72, 111
AcoI	YGGCCR	1 cut(s)	321
AcsI	RAATTY	1 cut(s)	264
AcuI	CTGAAG	2 cut(s)	43, 523
AdeI	CACNNNGTG	1 cut(s)	341
AgsI	TTSAA	1 cut(s)	214
AjiI	CACGTC	1 cut(s)	440
AluBI	AGCT	3 cut(s)	187, 370, 419
AluI	AGCT	3 cut(s)	187, 370, 419
AlwNI	CAGNNNCTG	1 cut(s)	66
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	6 cut(s)	34, 91, 118, 271, 321, 445
ApeKI	GCWGC	2 cut(s)	66, 397
ApoI	RAATTY	1 cut(s)	264
AseI	ATTAAT	1 cut(s)	279
AspS9I	GGNCC	5 cut(s)	119, 272, 473, 494, 515
AsuC2I	CCSGG	1 cut(s)	449
AsuHPI	GGTGA	2 cut(s)	182, 353
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	3 cut(s)	473, 494, 515
BalI	TGGCCA	1 cut(s)	323
BbvI	GCAGC	2 cut(s)	53, 409
BccI	CCATC	2 cut(s)	38, 301
BceAI	ACGGC	1 cut(s)	78
BcnI	CCSGG	1 cut(s)	449
BfmI	CTRYAG	1 cut(s)	230
BglI	GCCNNNNNGGC	1 cut(s)	75
BisI	GCNGC	9 cut(s)	19, 37, 40, 49, 67, 70, 73, 76, 398
BlsI	GCNGC	9 cut(s)	20, 38, 41, 50, 68, 71, 74, 77, 399
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	3 cut(s)	473, 494, 515
BmeT110I	CYCGRG	1 cut(s)	426
BmgBI	CACGTC	1 cut(s)	440
BmgT120I	GGNCC	5 cut(s)	119, 272, 473, 494, 515
BmiI	GGNNCC	2 cut(s)	474, 495
BmrFI	CCNGG	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	449
BsaJI	CCNNGG	8 cut(s)	37, 70, 94, 448, 458, 479, 500, 521
BseDI	CCNNGG	8 cut(s)	37, 70, 94, 448, 458, 479, 500, 521
BseMII	CTCAG	2 cut(s)	257, 309
BseRI	GAGGAG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	53, 409
BseYI	CCCAGC	1 cut(s)	361
Bsh1236I	CGCG	3 cut(s)	39, 72, 111
BshFI	GGCC	6 cut(s)	36, 93, 120, 273, 323, 447
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	1 cut(s)	448
BslFI	GGGAC	2 cut(s)	486, 507
BsmFI	GGGAC	2 cut(s)	486, 507
BsnI	GGCC	6 cut(s)	36, 93, 120, 273, 323, 447
BsoBI	CYCGRG	1 cut(s)	426
BspANI	GGCC	6 cut(s)	36, 93, 120, 273, 323, 447
BspCNI	CTCAG	2 cut(s)	256, 308
BspFNI	CGCG	3 cut(s)	39, 72, 111
BspLI	GGNNCC	2 cut(s)	474, 495
BspMAI	CTGCAG	1 cut(s)	234
BssECI	CCNNGG	8 cut(s)	37, 70, 94, 448, 458, 479, 500, 521
BssT1I	CCWWGG	4 cut(s)	458, 479, 500, 521
BstDEI	CTNAG	2 cut(s)	243, 295
BstDSI	CCRYGG	3 cut(s)	37, 70, 94
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstFNI	CGCG	3 cut(s)	39, 72, 111
BstMWI	GCNNNNNNNGC	8 cut(s)	45, 48, 54, 63, 72, 75, 117, 543
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	230
BstUI	CGCG	3 cut(s)	39, 72, 111
BstV1I	GCAGC	2 cut(s)	53, 409
BsuRI	GGCC	6 cut(s)	36, 93, 120, 273, 323, 447
BtgI	CCRYGG	3 cut(s)	37, 70, 94
BtgZI	GCGATG	1 cut(s)	57
BtrI	CACGTC	1 cut(s)	440
CaiI	CAGNNNCTG	1 cut(s)	66
Cfr13I	GGNCC	5 cut(s)	119, 272, 473, 494, 515
Cfr42I	CCGCGG	2 cut(s)	40, 73
CseI	GACGC	1 cut(s)	182
CviAII	CATG	3 cut(s)	158, 162, 194
DdeI	CTNAG	2 cut(s)	243, 295
DraIII	CACNNNGTG	1 cut(s)	341
EaeI	YGGCCR	1 cut(s)	321
Eco130I	CCWWGG	4 cut(s)	458, 479, 500, 521
Eco47I	GGWCC	3 cut(s)	473, 494, 515
Eco57I	CTGAAG	2 cut(s)	43, 523
Eco88I	CYCGRG	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	4 cut(s)	119, 473, 494, 515
EcoT14I	CCWWGG	4 cut(s)	458, 479, 500, 521
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	4 cut(s)	458, 479, 500, 521
FaeI	CATG	3 cut(s)	161, 165, 197
FaiI	YATR	5 cut(s)	159, 163, 195, 331, 354
FaqI	GGGAC	2 cut(s)	486, 507
FatI	CATG	3 cut(s)	157, 161, 193
Fnu4HI	GCNGC	9 cut(s)	19, 37, 40, 49, 67, 70, 73, 76, 398
Fsp4HI	GCNGC	9 cut(s)	19, 37, 40, 49, 67, 70, 73, 76, 398
GluI	GCNGC	9 cut(s)	19, 37, 40, 49, 67, 70, 73, 76, 398
GsaI	CCCAGC	1 cut(s)	365
HaeIII	GGCC	6 cut(s)	36, 93, 120, 273, 323, 447
HapII	CCGG	1 cut(s)	448
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	3 cut(s)	161, 165, 197
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	2 cut(s)	241, 284
HpaII	CCGG	1 cut(s)	448
HphI	GGTGA	2 cut(s)	182, 353
Hpy188I	TCNGA	5 cut(s)	32, 62, 86, 130, 246
Hpy188III	TCNNGA	1 cut(s)	426
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	4 cut(s)	110, 135, 161, 305
HpyCH4IV	ACGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	161, 232, 383
HpyF10VI	GCNNNNNNNGC	8 cut(s)	45, 48, 54, 63, 72, 75, 117, 543
HpyF3I	CTNAG	2 cut(s)	243, 295
HpySE526I	ACGT	1 cut(s)	439
Hsp92II	CATG	3 cut(s)	161, 165, 197
KspI	CCGCGG	2 cut(s)	40, 73
LpnPI	CCDG	8 cut(s)	25, 323, 375, 429, 454, 461, 475, 526
Lsp1109I	GCAGC	2 cut(s)	53, 409
MaeII	ACGT	1 cut(s)	439
MaeIII	GTNAC	2 cut(s)	170, 178
MboII	GAAGA	3 cut(s)	211, 365, 383
MlsI	TGGCCA	1 cut(s)	323
MluCI	AATT	2 cut(s)	264, 276
MluNI	TGGCCA	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	235
Mox20I	TGGCCA	1 cut(s)	323
Mph1103I	ATGCAT	1 cut(s)	163
MscI	TGGCCA	1 cut(s)	323
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	323
MspA1I	CMGCKG	2 cut(s)	39, 72
MspI	CCGG	1 cut(s)	448
MspR9I	CCNGG	1 cut(s)	449
MvnI	CGCG	3 cut(s)	39, 72, 111
MwoI	GCNNNNNNNGC	8 cut(s)	45, 48, 54, 63, 72, 75, 117, 543
NciI	CCSGG	1 cut(s)	449
NlaIII	CATG	3 cut(s)	161, 165, 197
NlaIV	GGNNCC	2 cut(s)	474, 495
NmuCI	GTSAC	2 cut(s)	170, 178
NsiI	ATGCAT	1 cut(s)	163
NspI	RCATGY	1 cut(s)	165
PaeR7I	CTCGAG	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	3 cut(s)	485, 506, 527
PkrI	GCNGC	9 cut(s)	20, 38, 41, 50, 68, 71, 74, 77, 399
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	3 cut(s)	473, 494, 515
PshBI	ATTAAT	1 cut(s)	279
Psp5II	RGGWCCY	3 cut(s)	473, 494, 515
PspFI	CCCAGC	1 cut(s)	361
PspN4I	GGNNCC	2 cut(s)	474, 495
PspPI	GGNCC	5 cut(s)	119, 272, 473, 494, 515
PspPPI	RGGWCCY	3 cut(s)	473, 494, 515
PstI	CTGCAG	1 cut(s)	234
PstNI	CAGNNNCTG	1 cut(s)	66
PsyI	GACNNNGTC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	162
SacII	CCGCGG	2 cut(s)	40, 73
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	9 cut(s)	19, 37, 40, 49, 67, 70, 73, 76, 398
Sau96I	GGNCC	5 cut(s)	119, 272, 473, 494, 515
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	449
SfcI	CTRYAG	1 cut(s)	230
Sfr274I	CTCGAG	1 cut(s)	426
Sfr303I	CCGCGG	2 cut(s)	40, 73
SgrBI	CCGCGG	2 cut(s)	40, 73
SinI	GGWCC	3 cut(s)	473, 494, 515
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	426
SmoI	CTYRAG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	264, 276
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	4 cut(s)	458, 479, 500, 521
TaiI	ACGT	1 cut(s)	442
TaqI	TCGA	2 cut(s)	146, 427
TasI	AATT	2 cut(s)	264, 276
TauI	GCSGC	7 cut(s)	21, 39, 42, 51, 72, 75, 78
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseFI	GTSAC	2 cut(s)	170, 178
TseI	GCWGC	2 cut(s)	66, 397
Tsp45I	GTSAC	2 cut(s)	170, 178
TspDTI	ATGAA	4 cut(s)	146, 276, 297, 318
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	3 cut(s)	485, 506, 527
VpaK11BI	GGWCC	3 cut(s)	473, 494, 515
VspI	ATTAAT	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	264
XceI	RCATGY	1 cut(s)	165
XhoI	CTCGAG	1 cut(s)	426
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.