Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Forward (+)

22658898 .. 22659299

Gene Structure 402 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0243000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGATCGTACTGTGGGCACTTTGGAAAAATCGAAACAACCTCCTATGGCAGGGGACACAACAAACTGCACAGGATCTCCTTCTAAGTAGTCTTTCTTGGCTGGAGGAATTTCAAAAGGCTCGGGCTCCTACCAGTCAAAAGCTAAAGCAACCGAGATGTTTCTGGAAACCACCTGTGTATGGGAGTCTAAAGCTAAACGTGGATGCATCCTTCTTACCTAACCAAACCACAGGAGGAGTGGGAGGAGTACTACGTAATGATACTGGGCAAGTTCTTGCTGCATTTGCTGGGCCCATTATGCATGCTGCTTCTCCAAAACAAAGCGAATTGTATGCCATAAGAGCAGGTCTTGACCTGGTGAATACTCTACGTACATGCACAAGAAGTTATTATCGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

10.01

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	66 - 121	1.2e-08	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	107
AfaI	GTAC	3 cut(s)	9, 249, 373
AfiI	CCNNNNNNNGG	2 cut(s)	49, 179
AgsI	TTSAA	1 cut(s)	113
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	142, 193
AluI	AGCT	2 cut(s)	142, 193
AlwI	GGATC	1 cut(s)	81
Ama87I	CYCGRG	1 cut(s)	120
AoxI	GGCC	1 cut(s)	290
ApaI	GGGCCC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	278, 305
ApoI	RAATTY	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	290, 291
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	1 cut(s)	120
BaeGI	GKGCMC	2 cut(s)	19, 294
BanII	GRGCYC	2 cut(s)	127, 294
BbvI	GCAGC	2 cut(s)	265, 292
BcgI	CGANNNNNNTGC	2 cut(s)	314, 348
BciT130I	CCWGG	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	279, 306
BlsI	GCNGC	2 cut(s)	280, 307
BmcAI	AGTACT	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	356
BmeT110I	CYCGRG	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	290, 291
BmiI	GGNNCC	2 cut(s)	126, 292
BmrFI	CCNGG	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	273
BmsI	GCATC	2 cut(s)	193, 215
BmuI	ACTGGG	1 cut(s)	273
BpmI	CTGGAG	1 cut(s)	122
BsaAI	YACGTR	2 cut(s)	254, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	49, 179
Bse1I	ACTGG	2 cut(s)	132, 268
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	206, 208
BseLI	CCNNNNNNNGG	2 cut(s)	49, 179
BseNI	ACTGG	2 cut(s)	132, 268
BseRI	GAGGAG	2 cut(s)	249, 258
BseSI	GKGCMC	2 cut(s)	19, 294
BseXI	GCAGC	2 cut(s)	265, 292
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	51
BshFI	GGCC	1 cut(s)	292
BsiHKCI	CYCGRG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	49, 179
BsmFI	GGGAC	1 cut(s)	67
BsnI	GGCC	1 cut(s)	292
BsoBI	CYCGRG	1 cut(s)	120
Bsp120I	GGGCCC	1 cut(s)	290
Bsp1286I	GDGCHC	3 cut(s)	19, 127, 294
Bsp143I	GATC	2 cut(s)	3, 73
BspANI	GGCC	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	126, 292
BspMI	ACCTGC	1 cut(s)	335
BspPI	GGATC	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	132, 268
BssMI	GATC	2 cut(s)	3, 73
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	12
BstBAI	YACGTR	2 cut(s)	254, 371
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	1 cut(s)	83
BstENI	CCTNNNNNAGG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	206, 208
BstKTI	GATC	2 cut(s)	6, 76
BstMBI	GATC	2 cut(s)	3, 73
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 298, 341
BstNI	CCWGG	1 cut(s)	356
BstNSI	RCATGY	2 cut(s)	305, 378
BstSCI	CCNGG	1 cut(s)	354
BstSLI	GKGCMC	2 cut(s)	19, 294
BstSNI	TACGTA	2 cut(s)	254, 371
BstV1I	GCAGC	2 cut(s)	265, 292
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BsuRI	GGCC	1 cut(s)	292
BtsCI	GGATG	2 cut(s)	206, 208
BveI	ACCTGC	1 cut(s)	335
Cac8I	GCNNGC	1 cut(s)	303
Cfr13I	GGNCC	2 cut(s)	290, 291
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	8, 248, 372
CviAII	CATG	2 cut(s)	302, 375
CviJI	RGCY	6 cut(s)	100, 119, 125, 142, 193, 292
CviKI_1	RGCY	6 cut(s)	100, 119, 125, 142, 193, 292
CviQI	GTAC	3 cut(s)	8, 248, 372
DdeI	CTNAG	1 cut(s)	83
DpnI	GATC	2 cut(s)	5, 75
DpnII	GATC	2 cut(s)	3, 73
Eco105I	TACGTA	2 cut(s)	254, 371
Eco24I	GRGCYC	2 cut(s)	127, 294
Eco88I	CYCGRG	1 cut(s)	120
EcoNI	CCTNNNNNAGG	1 cut(s)	47
EcoRII	CCWGG	1 cut(s)	354
EcoT22I	ATGCAT	2 cut(s)	208, 303
EcoT38I	GRGCYC	2 cut(s)	127, 294
FaeI	CATG	2 cut(s)	305, 378
FaiI	YATR	7 cut(s)	46, 180, 299, 303, 333, 338, 376
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	2 cut(s)	301, 374
Fnu4HI	GCNGC	2 cut(s)	279, 306
FokI	GGATG	2 cut(s)	193, 215
FriOI	GRGCYC	2 cut(s)	127, 294
Fsp4HI	GCNGC	2 cut(s)	279, 306
GluI	GCNGC	2 cut(s)	279, 306
GsaI	CCCAGC	1 cut(s)	291
GsuI	CTGGAG	1 cut(s)	122
HaeIII	GGCC	1 cut(s)	292
Hin1II	CATG	2 cut(s)	305, 378
HinfI	GANTC	1 cut(s)	184
HphI	GGTGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	163, 350
HpyAV	CCTTC	2 cut(s)	89, 220
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	3 cut(s)	198, 253, 370
HpyCH4V	TGCA	5 cut(s)	68, 206, 281, 301, 378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 298, 341
HpyF3I	CTNAG	1 cut(s)	83
HpySE526I	ACGT	3 cut(s)	198, 253, 370
Hsp92II	CATG	2 cut(s)	305, 378
Kzo9I	GATC	2 cut(s)	3, 73
LmnI	GCTCC	1 cut(s)	130
Lsp1109I	GCAGC	2 cut(s)	265, 292
LweI	GCATC	2 cut(s)	193, 215
MabI	ACCWGGT	1 cut(s)	354
MaeII	ACGT	3 cut(s)	198, 253, 370
MalI	GATC	2 cut(s)	5, 75
MboI	GATC	2 cut(s)	3, 73
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	3 cut(s)	19, 127, 294
MluCI	AATT	2 cut(s)	107, 326
MlyI	GAGTC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	50, 97, 227, 236
Mph1103I	ATGCAT	2 cut(s)	208, 303
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	284, 298, 341
NdeII	GATC	2 cut(s)	3, 73
NlaIII	CATG	2 cut(s)	305, 378
NlaIV	GGNNCC	2 cut(s)	126, 292
NsiI	ATGCAT	2 cut(s)	208, 303
NspI	RCATGY	2 cut(s)	305, 378
PaeI	GCATGC	1 cut(s)	305
PkrI	GCNGC	2 cut(s)	280, 307
PleI	GAGTC	1 cut(s)	192
PpsI	GAGTC	1 cut(s)	192
Ppu21I	YACGTR	2 cut(s)	254, 371
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	126, 292
PspOMI	GGGCCC	1 cut(s)	290
PspPI	GGNCC	2 cut(s)	290, 291
PsuI	RGATCY	1 cut(s)	73
RsaI	GTAC	3 cut(s)	9, 249, 373
RsaNI	GTAC	3 cut(s)	8, 248, 372
SatI	GCNGC	2 cut(s)	279, 306
Sau3AI	GATC	2 cut(s)	3, 73
Sau96I	GGNCC	2 cut(s)	290, 291
ScaI	AGTACT	1 cut(s)	249
SchI	GAGTC	1 cut(s)	193
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	3 cut(s)	19, 127, 294
SexAI	ACCWGGT	1 cut(s)	354
SfaNI	GCATC	2 cut(s)	193, 215
SnaBI	TACGTA	2 cut(s)	254, 371
SphI	GCATGC	1 cut(s)	305
Sse9I	AATT	2 cut(s)	107, 326
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	3 cut(s)	201, 256, 373
TaqI	TCGA	2 cut(s)	31, 394
TasI	AATT	2 cut(s)	107, 326
TatI	WGTACW	1 cut(s)	247
TseI	GCWGC	2 cut(s)	278, 305
XagI	CCTNNNNNAGG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	107
XceI	RCATGY	2 cut(s)	305, 378
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
ZrmI	AGTACT	1 cut(s)	249
Zsp2I	ATGCAT	2 cut(s)	208, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.