Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018339.1

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Reverse (-)

2946 .. 6153

Gene Structure 3208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgcgacctcccagaggcggcggtagtttcagaggcaaccgcggtggcggaggtttcagaggccgcggcggcggagacttcagaggtggccgtggtggcttccgcgacgaaggccctccttcggaagtggtagaggtttcaacgtttgttcatgcatgtgagggtgatgctgtcacaaagctcacacatgagaagataccctatttcaatgccccaatctatctgcagaacaagactcagataggcaaagtcgatgaaatttttggcccaattaatgaatcttacttctcggtcaaagtgatggaaggcattgtggcaacttcatattcacagggtgataagttctatattgacccagcgaagcttcttcctcttgcaagatttcttccacagcccaagggacagaaaccagctttttctcgaggtggaggacgtggaggcaggggacctccaaggggtggcagaggtggagtttttcgtggcaggggacctccaagagggggtggcagaggacccccgagggaccaacgtcttgacccaaaatctgacccaagcaggacatttgccatatcagcccaactctatattgtggctgaagtcagcaaggccgcgaaagaaactaagctaagagtgccggagaagtcgccggtgccgacgagctttaaatcggctgcccgaaattgtcgggaaacagtcggaaaaaattcaagcttctcgagccttgtatcgtcgccatccgtcgctgattggaccaccgccaggaggacgtcggctttgaggagagggatcgagcataggtggtccgccgccgggagatggtcagacggtggagtgccggttggattctctttctgggtttccgggttgcgctcgcgggttagaagcctagaagcttctatcgtggtctaccaaagtttgactcgatctgatcctgtatatagcctctccaataattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

318

Amino Acids

34.26

Weight (kDa)

10.73

Isoelectric Point (pI)

46.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	770
AccB1I	GGYRCC	1 cut(s)	649
AccB7I	CCANNNNNTGG	1 cut(s)	458
AccI	GTMKAC	1 cut(s)	906
AccII	CGCG	5 cut(s)	42, 66, 105, 611, 874
AclI	AACGTT	1 cut(s)	143
AclWI	GGATC	2 cut(s)	794, 923
AcoI	YGGCCR	1 cut(s)	88
AcsI	RAATTY	2 cut(s)	258, 703
AcuI	CTGAAG	2 cut(s)	64, 615
AcyI	GRCGYC	1 cut(s)	767
AdeI	CACNNNGTG	1 cut(s)	335
AgsI	TTSAA	3 cut(s)	141, 208, 708
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	758
AluBI	AGCT	7 cut(s)	181, 364, 413, 625, 660, 711, 893
AluI	AGCT	7 cut(s)	181, 364, 413, 625, 660, 711, 893
Alw26I	GTCTC	1 cut(s)	69
AlwI	GGATC	2 cut(s)	794, 923
Ama87I	CYCGRG	3 cut(s)	420, 517, 715
AoxI	GGCC	5 cut(s)	61, 88, 112, 265, 606
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	2 cut(s)	258, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	757, 789
AseI	ATTAAT	1 cut(s)	273
Asp700I	GAANNNNTTC	1 cut(s)	703
AspLEI	GCGC	1 cut(s)	870
AspS9I	GGNCC	8 cut(s)	113, 266, 446, 488, 512, 523, 750, 801
AsuC2I	CCSGG	2 cut(s)	811, 862
AsuHPI	GGTGA	2 cut(s)	176, 347
AvaI	CYCGRG	3 cut(s)	420, 517, 715
AvaII	GGWCC	6 cut(s)	446, 488, 512, 523, 750, 801
BanI	GGYRCC	1 cut(s)	649
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	3 cut(s)	295, 742, 810
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	1 cut(s)	760
BcnI	CCSGG	2 cut(s)	811, 862
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	1 cut(s)	224
BglI	GCCNNNNNGGC	2 cut(s)	69, 96
BisI	GCNGC	7 cut(s)	19, 64, 67, 70, 609, 672, 807
BlsI	GCNGC	7 cut(s)	20, 65, 68, 71, 610, 673, 808
Bme1390I	CCNGG	3 cut(s)	760, 811, 862
Bme18I	GGWCC	6 cut(s)	446, 488, 512, 523, 750, 801
BmeT110I	CYCGRG	3 cut(s)	420, 517, 715
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	8 cut(s)	113, 266, 446, 488, 512, 523, 750, 801
BmiI	GGNNCC	5 cut(s)	447, 489, 514, 524, 651
BmrFI	CCNGG	3 cut(s)	760, 811, 862
BmsI	GCATC	1 cut(s)	157
BoxI	GACNNNNGTC	1 cut(s)	528
BpuMI	CCSGG	2 cut(s)	811, 862
BsaHI	GRCGYC	1 cut(s)	767
BsaJI	CCNNGG	6 cut(s)	40, 64, 91, 396, 452, 518
BsaXI	ACNNNNNCTCC	2 cut(s)	822, 852
Bse118I	RCCGGY	2 cut(s)	646, 835
BseBI	CCWGG	1 cut(s)	760
BseDI	CCNNGG	6 cut(s)	40, 64, 91, 396, 452, 518
BseGI	GGATG	1 cut(s)	734
BseMII	CTCAG	1 cut(s)	251
BseRI	GAGGAG	1 cut(s)	793
BseXI	GCAGC	1 cut(s)	658
BseYI	CCCAGC	1 cut(s)	355
Bsh1236I	CGCG	5 cut(s)	42, 66, 105, 611, 874
BshFI	GGCC	5 cut(s)	63, 90, 114, 267, 608
BshNI	GGYRCC	1 cut(s)	649
BsiHKCI	CYCGRG	3 cut(s)	420, 517, 715
BsiSI	CCGG	5 cut(s)	635, 647, 810, 836, 861
BslFI	GGGAC	4 cut(s)	414, 459, 501, 536
BsmAI	GTCTC	1 cut(s)	69
BsmFI	GGGAC	4 cut(s)	414, 459, 501, 536
BsnI	GGCC	5 cut(s)	63, 90, 114, 267, 608
BsoBI	CYCGRG	3 cut(s)	420, 517, 715
Bsp143I	GATC	3 cut(s)	786, 923, 928
BspANI	GGCC	5 cut(s)	63, 90, 114, 267, 608
BspCNI	CTCAG	1 cut(s)	250
BspFNI	CGCG	5 cut(s)	42, 66, 105, 611, 874
BspLI	GGNNCC	5 cut(s)	447, 489, 514, 524, 651
BspMAI	CTGCAG	1 cut(s)	228
BspPI	GGATC	2 cut(s)	794, 923
BspT107I	GGYRCC	1 cut(s)	649
BsrFI	RCCGGY	2 cut(s)	646, 835
BssAI	RCCGGY	2 cut(s)	646, 835
BssECI	CCNNGG	6 cut(s)	40, 64, 91, 396, 452, 518
BssMI	GATC	3 cut(s)	786, 923, 928
BssNI	GRCGYC	1 cut(s)	767
BssT1I	CCWWGG	2 cut(s)	396, 452
Bst2UI	CCWGG	1 cut(s)	760
Bst4CI	ACNGT	2 cut(s)	694, 827
BstACI	GRCGYC	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	872
BstDEI	CTNAG	3 cut(s)	237, 621, 626
BstDSI	CCRYGG	3 cut(s)	40, 64, 91
BstENI	CCTNNNNNAGG	2 cut(s)	12, 495
BstF5I	GGATG	1 cut(s)	734
BstFNI	CGCG	5 cut(s)	42, 66, 105, 611, 874
BstHHI	GCGC	1 cut(s)	870
BstKTI	GATC	3 cut(s)	789, 926, 931
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	3 cut(s)	786, 923, 928
BstMWI	GCNNNNNNNGC	6 cut(s)	69, 96, 111, 572, 631, 717
BstNI	CCWGG	1 cut(s)	760
BstNSI	RCATGY	1 cut(s)	159
BstPAI	GACNNNNGTC	1 cut(s)	528
BstSCI	CCNGG	3 cut(s)	758, 809, 860
BstSFI	CTRYAG	1 cut(s)	224
BstUI	CGCG	5 cut(s)	42, 66, 105, 611, 874
BstV1I	GCAGC	1 cut(s)	658
BsuRI	GGCC	5 cut(s)	63, 90, 114, 267, 608
BtgI	CCRYGG	3 cut(s)	40, 64, 91
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	734
Cac8I	GCNNGC	1 cut(s)	872
CfoI	GCGC	1 cut(s)	870
Cfr10I	RCCGGY	2 cut(s)	646, 835
Cfr13I	GGNCC	8 cut(s)	113, 266, 446, 488, 512, 523, 750, 801
Cfr42I	CCGCGG	2 cut(s)	43, 67
CspCI	CAANNNNNGTGG	2 cut(s)	25, 60
CviAII	CATG	3 cut(s)	152, 156, 188
DdeI	CTNAG	3 cut(s)	237, 621, 626
DpnI	GATC	3 cut(s)	788, 925, 930
DpnII	GATC	3 cut(s)	786, 923, 928
DraI	TTTAAA	1 cut(s)	664
DraIII	CACNNNGTG	1 cut(s)	335
EaeI	YGGCCR	1 cut(s)	88
EciI	GGCGGA	3 cut(s)	63, 87, 793
Eco130I	CCWWGG	2 cut(s)	396, 452
Eco47I	GGWCC	6 cut(s)	446, 488, 512, 523, 750, 801
Eco57I	CTGAAG	2 cut(s)	64, 615
Eco88I	CYCGRG	3 cut(s)	420, 517, 715
EcoNI	CCTNNNNNAGG	2 cut(s)	12, 495
EcoO109I	RGGNCCY	4 cut(s)	113, 446, 488, 512
EcoRII	CCWGG	1 cut(s)	758
EcoT14I	CCWWGG	2 cut(s)	396, 452
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	2 cut(s)	396, 452
FaeI	CATG	3 cut(s)	155, 159, 191
FaqI	GGGAC	4 cut(s)	414, 459, 501, 536
FatI	CATG	3 cut(s)	151, 155, 187
FauI	CCCGC	1 cut(s)	867
FblI	GTMKAC	1 cut(s)	906
Fnu4HI	GCNGC	7 cut(s)	19, 64, 67, 70, 609, 672, 807
FokI	GGATG	1 cut(s)	721
Fsp4HI	GCNGC	7 cut(s)	19, 64, 67, 70, 609, 672, 807
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	1 cut(s)	869
GluI	GCNGC	7 cut(s)	19, 64, 67, 70, 609, 672, 807
GsaI	CCCAGC	1 cut(s)	359
HaeIII	GGCC	5 cut(s)	63, 90, 114, 267, 608
HapII	CCGG	5 cut(s)	635, 647, 810, 836, 861
HhaI	GCGC	1 cut(s)	870
Hin1I	GRCGYC	1 cut(s)	767
Hin1II	CATG	3 cut(s)	155, 159, 191
Hin6I	GCGC	1 cut(s)	868
HinP1I	GCGC	1 cut(s)	868
HindIII	AAGCTT	3 cut(s)	362, 709, 891
HinfI	GANTC	4 cut(s)	235, 278, 843, 919
HpaII	CCGG	5 cut(s)	635, 647, 810, 836, 861
HphI	GGTGA	2 cut(s)	176, 347
Hpy166II	GTNNAC	1 cut(s)	907
Hpy188I	TCNGA	9 cut(s)	32, 59, 83, 124, 240, 547, 698, 823, 928
Hpy188III	TCNNGA	4 cut(s)	420, 533, 686, 715
Hpy8I	GTNNAC	1 cut(s)	907
Hpy99I	CGWCG	5 cut(s)	110, 658, 733, 743, 772
HpyAV	CCTTC	3 cut(s)	104, 129, 299
HpyCH4III	ACNGT	2 cut(s)	694, 827
HpyCH4IV	ACGT	4 cut(s)	143, 433, 529, 767
HpyCH4V	TGCA	3 cut(s)	155, 226, 377
HpyF10VI	GCNNNNNNNGC	6 cut(s)	69, 96, 111, 572, 631, 717
HpyF3I	CTNAG	3 cut(s)	237, 621, 626
HpySE526I	ACGT	4 cut(s)	143, 433, 529, 767
Hsp92I	GRCGYC	1 cut(s)	767
Hsp92II	CATG	3 cut(s)	155, 159, 191
HspAI	GCGC	1 cut(s)	868
KspI	CCGCGG	2 cut(s)	43, 67
Kzo9I	GATC	3 cut(s)	786, 923, 928
Lsp1109I	GCAGC	1 cut(s)	658
LweI	GCATC	1 cut(s)	157
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	4 cut(s)	143, 433, 529, 767
MaeIII	GTNAC	1 cut(s)	172
MalI	GATC	3 cut(s)	788, 925, 930
MboI	GATC	3 cut(s)	786, 923, 928
MboII	GAAGA	3 cut(s)	205, 359, 377
MluCI	AATT	5 cut(s)	258, 270, 679, 703, 952
MlyI	GAGTC	2 cut(s)	229, 913
MmeI	TCCRAC	2 cut(s)	676, 820
Mph1103I	ATGCAT	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	703
MseI	TTAA	2 cut(s)	273, 663
MslI	CAYNNNNRTG	1 cut(s)	156
MspA1I	CMGCKG	2 cut(s)	42, 66
MspI	CCGG	5 cut(s)	635, 647, 810, 836, 861
MspR9I	CCNGG	3 cut(s)	760, 811, 862
MvaI	CCWGG	1 cut(s)	760
MvnI	CGCG	5 cut(s)	42, 66, 105, 611, 874
MwoI	GCNNNNNNNGC	6 cut(s)	69, 96, 111, 572, 631, 717
NciI	CCSGG	2 cut(s)	811, 862
NdeII	GATC	3 cut(s)	786, 923, 928
NlaIII	CATG	3 cut(s)	155, 159, 191
NlaIV	GGNNCC	5 cut(s)	447, 489, 514, 524, 651
NmuCI	GTSAC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	157
NspI	RCATGY	1 cut(s)	159
PaeR7I	CTCGAG	2 cut(s)	420, 715
PcsI	WCGNNNNNNNCGW	1 cut(s)	650
PdmI	GAANNNNTTC	1 cut(s)	703
PfeI	GAWTC	2 cut(s)	278, 843
PflMI	CCANNNNNTGG	1 cut(s)	458
PkrI	GCNGC	7 cut(s)	20, 65, 68, 71, 610, 673, 808
PleI	GAGTC	2 cut(s)	229, 913
PpsI	GAGTC	2 cut(s)	229, 913
PpuMI	RGGWCCY	3 cut(s)	446, 488, 512
PshAI	GACNNNNGTC	1 cut(s)	528
PshBI	ATTAAT	1 cut(s)	273
Psp1406I	AACGTT	1 cut(s)	143
Psp5II	RGGWCCY	3 cut(s)	446, 488, 512
Psp6I	CCWGG	1 cut(s)	758
PspFI	CCCAGC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	758
PspN4I	GGNNCC	5 cut(s)	447, 489, 514, 524, 651
PspPI	GGNCC	8 cut(s)	113, 266, 446, 488, 512, 523, 750, 801
PspPPI	RGGWCCY	3 cut(s)	446, 488, 512
PstI	CTGCAG	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	156
SacII	CCGCGG	2 cut(s)	43, 67
SaqAI	TTAA	2 cut(s)	273, 663
SatI	GCNGC	7 cut(s)	19, 64, 67, 70, 609, 672, 807
Sau3AI	GATC	3 cut(s)	786, 923, 928
Sau96I	GGNCC	8 cut(s)	113, 266, 446, 488, 512, 523, 750, 801
SchI	GAGTC	2 cut(s)	229, 913
ScrFI	CCNGG	3 cut(s)	760, 811, 862
SfaNI	GCATC	1 cut(s)	157
SfcI	CTRYAG	1 cut(s)	224
Sfr274I	CTCGAG	2 cut(s)	420, 715
Sfr303I	CCGCGG	2 cut(s)	43, 67
SgrAI	CRCCGGYG	1 cut(s)	646
SgrBI	CCGCGG	2 cut(s)	43, 67
SinI	GGWCC	6 cut(s)	446, 488, 512, 523, 750, 801
SlaI	CTCGAG	2 cut(s)	420, 715
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	2 cut(s)	420, 715
SmoI	CTYRAG	2 cut(s)	420, 715
Sse9I	AATT	5 cut(s)	258, 270, 679, 703, 952
SspMI	CTAG	1 cut(s)	887
StyD4I	CCNGG	3 cut(s)	758, 809, 860
StyI	CCWWGG	2 cut(s)	396, 452
TaaI	ACNGT	2 cut(s)	694, 827
TaiI	ACGT	4 cut(s)	146, 436, 532, 770
TaqI	TCGA	5 cut(s)	252, 421, 716, 789, 922
TaqII	GACCGA	1 cut(s)	280
TasI	AATT	5 cut(s)	258, 270, 679, 703, 952
TauI	GCSGC	6 cut(s)	21, 66, 69, 72, 611, 809
TfiI	GAWTC	2 cut(s)	278, 843
Tru1I	TTAA	2 cut(s)	273, 663
Tru9I	TTAA	2 cut(s)	273, 663
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	671
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	4 cut(s)	140, 270, 291, 312
TspGWI	ACGGA	1 cut(s)	727
Van91I	CCANNNNNTGG	1 cut(s)	458
VpaK11BI	GGWCC	6 cut(s)	446, 488, 512, 523, 750, 801
VspI	ATTAAT	1 cut(s)	273
XagI	CCTNNNNNAGG	2 cut(s)	12, 495
XapI	RAATTY	2 cut(s)	258, 703
XceI	RCATGY	1 cut(s)	159
XhoI	CTCGAG	2 cut(s)	420, 715
XmiI	GTMKAC	1 cut(s)	906
XmnI	GAANNNNTTC	1 cut(s)	703
XspI	CTAG	1 cut(s)	887
ZraI	GACGTC	1 cut(s)	768
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.