Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Reverse (-)

9568903 .. 9571289

Gene Structure 2387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G064800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGCGTCCTCCAAGAGGCGGCGGTGGGTTTAGGGGCAGCCGCGGTGGTGGCGGCGGCTTTAGAGGCGGCCGCGGAGGAGGTGGCCGTGGTGGAGGTGGCCGTGGCTACCGCGATGAGGGTCCTCCTTCTGAAGTCGTAGAGGTTTCGACATTTCTTCATGCGTGTGAAGGTGACGCAGTCACAAAGCTCACAAATGCGAAGAAGGTGCCCTATTTTAATGCCCCTATCTATCTGCAGAACATGACTCAGATAGGGAAGGTTGATGAAATATTTGGTCCAATCAATGAATCTTTATTCTCAATTAAAGTGATGGAAGGCATTGTGGCAACTTCATATTCACAGGGCGATAAGTTCTATATTGACCCAGCAAAGCTTCTTCCTCTTGAAAGATTTCTTCCACAGCCAAAGGGACAGAAACCAGCTTTTTCTCGAGGTGGAGGCCGTGGTGGAGGCAGAGGTGGTGCTTTTCGTGGTGGTGGCCGTGGAGGTGGTGCTTTTCGTGGAAGGGGTGCTCCAAGGGGCGGCAGAGGCCCCCCAAGGGGTGGTAGCCGTGGTGGTGGCTTCAGGGGCAGAGGGAGATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

195

Amino Acids

20.02

Weight (kDa)

11.37

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	205
AccB7I	CCANNNNNTGG	1 cut(s)	542
AccII	CGCG	3 cut(s)	42, 72, 111
AcoI	YGGCCR	4 cut(s)	67, 82, 97, 478
AcuI	CTGAAG	2 cut(s)	150, 547
AfiI	CCNNNNNNNGG	7 cut(s)	14, 17, 115, 521, 538, 539, 542
AgsI	TTSAA	1 cut(s)	386
AluBI	AGCT	3 cut(s)	187, 373, 422
AluI	AGCT	3 cut(s)	187, 373, 422
Alw21I	GWGCWC	1 cut(s)	514
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	6 cut(s)	67, 82, 97, 439, 478, 529
ApeKI	GCWGC	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	119, 275, 530
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	119, 275
BaeGI	GKGCMC	1 cut(s)	210
BanI	GGYRCC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	1 cut(s)	48
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	5 cut(s)	69, 84, 426, 465, 534
BcgI	CGANNNNNNTGC	2 cut(s)	187, 221
BfmI	CTRYAG	1 cut(s)	233
BisI	GCNGC	8 cut(s)	19, 37, 40, 52, 55, 67, 70, 523
BlsI	GCNGC	8 cut(s)	20, 38, 41, 53, 56, 68, 71, 524
Bme18I	GGWCC	2 cut(s)	119, 275
BmeT110I	CYCGRG	1 cut(s)	429
BmgT120I	GGNCC	3 cut(s)	119, 275, 530
BmiI	GGNNCC	3 cut(s)	120, 207, 532
BsaJI	CCNNGG	9 cut(s)	40, 70, 85, 100, 442, 481, 515, 536, 550
Bsc4I	CCNNNNNNNGG	7 cut(s)	14, 17, 115, 521, 538, 539, 542
BseDI	CCNNGG	9 cut(s)	40, 70, 85, 100, 442, 481, 515, 536, 550
BseLI	CCNNNNNNNGG	7 cut(s)	14, 17, 115, 521, 538, 539, 542
BseMII	CTCAG	1 cut(s)	260
BseRI	GAGGAG	1 cut(s)	90
BseSI	GKGCMC	1 cut(s)	210
BseX3I	CGGCCG	1 cut(s)	67
BseXI	GCAGC	1 cut(s)	48
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	3 cut(s)	42, 72, 111
Bsh1285I	CGRYCG	1 cut(s)	70
BshFI	GGCC	6 cut(s)	69, 84, 99, 441, 480, 531
BshNI	GGYRCC	1 cut(s)	205
BsiEI	CGRYCG	1 cut(s)	70
BsiHKAI	GWGCWC	1 cut(s)	514
BsiHKCI	CYCGRG	1 cut(s)	429
BslFI	GGGAC	1 cut(s)	423
BslI	CCNNNNNNNGG	7 cut(s)	14, 17, 115, 521, 538, 539, 542
BsmFI	GGGAC	1 cut(s)	423
BsnI	GGCC	6 cut(s)	69, 84, 99, 441, 480, 531
BsoBI	CYCGRG	1 cut(s)	429
Bsp1286I	GDGCHC	2 cut(s)	210, 514
BspANI	GGCC	6 cut(s)	69, 84, 99, 441, 480, 531
BspCNI	CTCAG	1 cut(s)	259
BspFNI	CGCG	3 cut(s)	42, 72, 111
BspLI	GGNNCC	3 cut(s)	120, 207, 532
BspMAI	CTGCAG	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	205
BssECI	CCNNGG	9 cut(s)	40, 70, 85, 100, 442, 481, 515, 536, 550
BssT1I	CCWWGG	2 cut(s)	515, 536
BstDEI	CTNAG	1 cut(s)	246
BstDSI	CCRYGG	7 cut(s)	40, 70, 85, 100, 442, 481, 550
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstFNI	CGCG	3 cut(s)	42, 72, 111
BstMCI	CGRYCG	1 cut(s)	70
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 63, 528, 567
BstSFI	CTRYAG	1 cut(s)	233
BstSLI	GKGCMC	1 cut(s)	210
BstUI	CGCG	3 cut(s)	42, 72, 111
BstV1I	GCAGC	1 cut(s)	48
BstZI	CGGCCG	1 cut(s)	67
BsuRI	GGCC	6 cut(s)	69, 84, 99, 441, 480, 531
BtgI	CCRYGG	7 cut(s)	40, 70, 85, 100, 442, 481, 550
BtgZI	GCGATG	1 cut(s)	126
CciNI	GCGGCCGC	1 cut(s)	67
Cfr13I	GGNCC	3 cut(s)	119, 275, 530
Cfr42I	CCGCGG	2 cut(s)	43, 73
CseI	GACGC	1 cut(s)	182
CviAII	CATG	2 cut(s)	158, 241
DdeI	CTNAG	1 cut(s)	246
EaeI	YGGCCR	4 cut(s)	67, 82, 97, 478
EagI	CGGCCG	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	515, 536
Eco47I	GGWCC	2 cut(s)	119, 275
Eco52I	CGGCCG	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	150, 547
Eco88I	CYCGRG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoO109I	RGGNCCY	2 cut(s)	119, 530
EcoT14I	CCWWGG	2 cut(s)	515, 536
ErhI	CCWWGG	2 cut(s)	515, 536
FaeI	CATG	2 cut(s)	161, 244
FaiI	YATR	4 cut(s)	159, 242, 334, 357
FaqI	GGGAC	1 cut(s)	423
FatI	CATG	2 cut(s)	157, 240
Fnu4HI	GCNGC	8 cut(s)	19, 37, 40, 52, 55, 67, 70, 523
Fsp4HI	GCNGC	8 cut(s)	19, 37, 40, 52, 55, 67, 70, 523
GluI	GCNGC	8 cut(s)	19, 37, 40, 52, 55, 67, 70, 523
GsaI	CCCAGC	1 cut(s)	368
HaeIII	GGCC	6 cut(s)	69, 84, 99, 441, 480, 531
HgaI	GACGC	1 cut(s)	182
Hin1II	CATG	2 cut(s)	161, 244
HindIII	AAGCTT	1 cut(s)	371
HinfI	GANTC	2 cut(s)	244, 287
HphI	GGTGA	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	130, 249
Hpy188III	TCNNGA	2 cut(s)	383, 429
HpyAV	CCTTC	6 cut(s)	135, 161, 196, 250, 308, 498
HpyCH4V	TGCA	1 cut(s)	235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 63, 528, 567
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	2 cut(s)	161, 244
KspI	CCGCGG	2 cut(s)	43, 73
LmnI	GCTCC	1 cut(s)	517
LpnPI	CCDG	4 cut(s)	326, 378, 432, 550
Lsp1109I	GCAGC	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	170, 178
MboII	GAAGA	4 cut(s)	146, 211, 368, 386
MhlI	GDGCHC	2 cut(s)	210, 514
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	238
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	2 cut(s)	216, 303
MslI	CAYNNNNRTG	1 cut(s)	162
MspA1I	CMGCKG	2 cut(s)	42, 72
MvnI	CGCG	3 cut(s)	42, 72, 111
MwoI	GCNNNNNNNGC	4 cut(s)	48, 63, 528, 567
NlaIII	CATG	2 cut(s)	161, 244
NlaIV	GGNNCC	3 cut(s)	120, 207, 532
NmuCI	GTSAC	2 cut(s)	170, 178
NotI	GCGGCCGC	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	429
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	287
PflFI	GACNNNGTC	1 cut(s)	176
PflMI	CCANNNNNTGG	1 cut(s)	542
PkrI	GCNGC	8 cut(s)	20, 38, 41, 53, 56, 68, 71, 524
PleI	GAGTC	1 cut(s)	238
PpsI	GAGTC	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	119
Psp5II	RGGWCCY	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	3 cut(s)	120, 207, 532
PspPI	GGNCC	3 cut(s)	119, 275, 530
PspPPI	RGGWCCY	1 cut(s)	119
PstI	CTGCAG	1 cut(s)	237
PsyI	GACNNNGTC	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	162
SacII	CCGCGG	2 cut(s)	43, 73
SaqAI	TTAA	2 cut(s)	216, 303
SatI	GCNGC	8 cut(s)	19, 37, 40, 52, 55, 67, 70, 523
Sau96I	GGNCC	3 cut(s)	119, 275, 530
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	2 cut(s)	210, 514
SfcI	CTRYAG	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	429
Sfr303I	CCGCGG	2 cut(s)	43, 73
SgrBI	CCGCGG	2 cut(s)	43, 73
SinI	GGWCC	2 cut(s)	119, 275
SlaI	CTCGAG	1 cut(s)	429
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
Sse9I	AATT	1 cut(s)	300
SspI	AATATT	1 cut(s)	270
StyI	CCWWGG	2 cut(s)	515, 536
TaqI	TCGA	2 cut(s)	146, 430
TasI	AATT	1 cut(s)	300
TauI	GCSGC	7 cut(s)	21, 42, 54, 57, 69, 72, 525
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	2 cut(s)	216, 303
Tru9I	TTAA	2 cut(s)	216, 303
TseFI	GTSAC	2 cut(s)	170, 178
TseI	GCWGC	1 cut(s)	36
Tsp45I	GTSAC	2 cut(s)	170, 178
TspDTI	ATGAA	4 cut(s)	146, 279, 300, 321
Tth111I	GACNNNGTC	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	542
VpaK11BI	GGWCC	2 cut(s)	119, 275
XagI	CCTNNNNNAGG	1 cut(s)	12
XhoI	CTCGAG	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.