Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012386

Physical Location & Seq

Genomic Coordinates Reverse (-)

6008561 .. 6009761

Gene Structure 1201 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G18180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAGACCACCACGTGGCGGCGGCAGCTTCAGGGGAAGGGGAGGAAGAGATAACGGCGGACGTGGACGTGGACGTGGACGTGGACGTGGACGCTTTGGTGGTGGTAATTATGACGAAGGACCTCCCAGCGAAGTCGTTGAAGTTGCAACTTTTCTCCATGCTTGTGAGGGAGATGCTGTGTTCAAGCTCTCCAATGTGAAAATCCCACATTTCAATGCCCCAATCTACCTACAAAACAAGACCCAGATTGGGAGAGTAGATGAAATCTTTGGTCCTATTAATGAATCTCTATTTTCTATCAAAATGAGGGAAGGTATTGTAGCTACCTCATATAGTCAAGGCGATAAGTTCTTCATTAGCCCTGAGAAGCTTTTACCTCTATCAAGATTCCTTCCTCAACCAAAGGGACAATCAGGAGGCCGTGGTGAAGGAAGAGTCCCTCCCCGTGGTAGAGGGCCTCCCCGTGGTAGAGGCAATTTCAGAGGTAGAGGTGCTCCCAGAGGTGCTAGCAGAGGGTTTCAACCAAGAGGTGGTCCTCGTGGAGGCTTCAGAGGCCGAGGGAGGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0000454 GO:0001522 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005732 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010467 GO:0016020 GO:0016070 GO:0016072 GO:0016074 GO:0022613 GO:0030515 GO:0031118 GO:0031429 GO:0031974 GO:0031976 GO:0031981 GO:0031984 GO:0032991 GO:0034357 GO:0034470 GO:0034513 GO:0034641 GO:0034660 GO:0042254 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044452 GO:0044464 GO:0046483 GO:0055035 GO:0070013 GO:0071704 GO:0071840 GO:0072588 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

Gar1

Protein Analysis

189

Amino Acids

20.31

Weight (kDa)

11.73

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gar1	PF04410	45 - 131	6.4e-26	Gar1/Naf1 RNA binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012386)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G03920 AT5G18180
fragaria_vesca	FvH4_1g30320
malus_domestica	MD00G1189600.v1.1 MD05G1045500.v1.1
prunus_persica	Prupe.8G064800_v2.0.a1
pyrus_communis	pycom05g03790 pycom10g03750
rosa_chinensis	RchiOBHm_Chr3g0490211
rosa_laevigata	RLG00000022895
rosa_multiflora	Rmu_sc0018339.1_g000001 Rmu_sc0019534.1_g000007
rosa_roxburghii	Rroxscaffold_6G00393700
rosa_rugosa	Rorug03G0243000
rosa_samantha	Rh3AG291400 Rh3BG328400 Rh3CG325400 Rh3DG324700
rosa_wichuraiana	Rw3G025790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	14, 530
AciI	CCGC	3 cut(s)	18, 21, 57
AcuI	CTGAAG	2 cut(s)	13, 532
AcvI	CACGTG	1 cut(s)	14
AdeI	CACNNNGTG	1 cut(s)	14
AfiI	CCNNNNNNNGG	8 cut(s)	14, 17, 249, 446, 464, 530, 542, 562
AgsI	TTSAA	4 cut(s)	140, 184, 214, 521
AjiI	CACGTC	5 cut(s)	62, 68, 74, 80, 86
AluBI	AGCT	4 cut(s)	27, 187, 323, 370
AluI	AGCT	4 cut(s)	27, 187, 323, 370
Alw21I	GWGCWC	1 cut(s)	496
AoxI	GGCC	4 cut(s)	418, 455, 553, 564
ApeKI	GCWGC	1 cut(s)	24
AseI	ATTAAT	1 cut(s)	279
AspS9I	GGNCC	5 cut(s)	119, 272, 455, 533, 564
AsuHPI	GGTGA	1 cut(s)	437
AsuNHI	GCTAGC	1 cut(s)	506
AvaII	GGWCC	3 cut(s)	119, 272, 533
BauI	CACGAG	1 cut(s)	537
BbrPI	CACGTG	1 cut(s)	14
Bbv12I	GWGCWC	1 cut(s)	496
BbvI	GCAGC	1 cut(s)	36
BceAI	ACGGC	2 cut(s)	70, 405
BfaI	CTAG	2 cut(s)	507, 568
BisI	GCNGC	3 cut(s)	19, 22, 25
BlsI	GCNGC	3 cut(s)	20, 23, 26
Bme18I	GGWCC	3 cut(s)	119, 272, 533
BmgBI	CACGTC	5 cut(s)	62, 68, 74, 80, 86
BmgT120I	GGNCC	5 cut(s)	119, 272, 455, 533, 564
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	14
BsaJI	CCNNGG	4 cut(s)	421, 445, 463, 556
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	8 cut(s)	14, 17, 249, 446, 464, 530, 542, 562
BseDI	CCNNGG	4 cut(s)	421, 445, 463, 556
BseLI	CCNNNNNNNGG	8 cut(s)	14, 17, 249, 446, 464, 530, 542, 562
BseMII	CTCAG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	36
BseYI	CCCAGC	1 cut(s)	125
BshFI	GGCC	4 cut(s)	420, 457, 555, 566
BsiHKAI	GWGCWC	1 cut(s)	496
BslFI	GGGAC	2 cut(s)	420, 422
BslI	CCNNNNNNNGG	8 cut(s)	14, 17, 249, 446, 464, 530, 542, 562
BsmFI	GGGAC	2 cut(s)	420, 422
BsnI	GGCC	4 cut(s)	420, 457, 555, 566
Bsp1286I	GDGCHC	1 cut(s)	496
BspACI	CCGC	3 cut(s)	18, 21, 57
BspANI	GGCC	4 cut(s)	420, 457, 555, 566
BspCNI	CTCAG	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	510
BssECI	CCNNGG	4 cut(s)	421, 445, 463, 556
BssSI	CACGAG	1 cut(s)	537
Bst2BI	CACGAG	1 cut(s)	537
Bst6I	CTCTTC	2 cut(s)	40, 427
BstBAI	YACGTR	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	508
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	3 cut(s)	421, 445, 463
BstENI	CCTNNNNNAGG	1 cut(s)	540
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 552
BstV1I	GCAGC	1 cut(s)	36
BsuRI	GGCC	4 cut(s)	420, 457, 555, 566
BtgI	CCRYGG	3 cut(s)	421, 445, 463
BtrI	CACGTC	5 cut(s)	62, 68, 74, 80, 86
Cac8I	GCNNGC	1 cut(s)	508
Cfr13I	GGNCC	5 cut(s)	119, 272, 455, 533, 564
CseI	GACGC	1 cut(s)	99
CviAII	CATG	1 cut(s)	158
DdeI	CTNAG	1 cut(s)	363
DraIII	CACNNNGTG	1 cut(s)	14
Eam1104I	CTCTTC	2 cut(s)	40, 427
EarI	CTCTTC	2 cut(s)	40, 427
EciI	GGCGGA	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	119, 272, 533
Eco57I	CTGAAG	2 cut(s)	13, 532
Eco72I	CACGTG	1 cut(s)	14
EcoNI	CCTNNNNNAGG	1 cut(s)	540
EcoO109I	RGGNCCY	3 cut(s)	119, 455, 564
FaeI	CATG	1 cut(s)	161
FaiI	YATR	4 cut(s)	111, 159, 331, 333
FaqI	GGGAC	2 cut(s)	420, 422
FatI	CATG	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	19, 22, 25
Fsp4HI	GCNGC	3 cut(s)	19, 22, 25
FspBI	CTAG	2 cut(s)	507, 568
GluI	GCNGC	3 cut(s)	19, 22, 25
GsaI	CCCAGC	1 cut(s)	129
HaeIII	GGCC	4 cut(s)	420, 457, 555, 566
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	1 cut(s)	161
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	3 cut(s)	284, 387, 435
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	5 cut(s)	65, 71, 77, 83, 89
Hpy188I	TCNGA	2 cut(s)	482, 551
Hpy188III	TCNNGA	2 cut(s)	384, 414
Hpy8I	GTNNAC	5 cut(s)	65, 71, 77, 83, 89
HpyAV	CCTTC	5 cut(s)	30, 110, 305, 401, 422
HpyCH4IV	ACGT	6 cut(s)	13, 61, 67, 73, 79, 85
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 552
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	6 cut(s)	13, 61, 67, 73, 79, 85
Hsp92II	CATG	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	6 cut(s)	16, 139, 257, 375, 399, 511
Lsp1109I	GCAGC	1 cut(s)	36
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	2 cut(s)	507, 568
MaeII	ACGT	6 cut(s)	13, 61, 67, 73, 79, 85
MboII	GAAGA	3 cut(s)	57, 343, 444
MhlI	GDGCHC	1 cut(s)	496
MluCI	AATT	2 cut(s)	106, 475
MlyI	GAGTC	1 cut(s)	444
MseI	TTAA	1 cut(s)	279
MslI	CAYNNNNRTG	2 cut(s)	162, 213
MwoI	GCNNNNNNNGC	2 cut(s)	24, 552
NheI	GCTAGC	1 cut(s)	506
NlaIII	CATG	1 cut(s)	161
PfeI	GAWTC	2 cut(s)	284, 387
PflMI	CCANNNNNTGG	2 cut(s)	14, 530
PkrI	GCNGC	3 cut(s)	20, 23, 26
PleI	GAGTC	1 cut(s)	443
PmaCI	CACGTG	1 cut(s)	14
PmlI	CACGTG	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	443
Ppu21I	YACGTR	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	119
PshBI	ATTAAT	1 cut(s)	279
Psp5II	RGGWCCY	1 cut(s)	119
PspCI	CACGTG	1 cut(s)	14
PspFI	CCCAGC	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	119, 272, 455, 533, 564
PspPPI	RGGWCCY	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	162, 213
SaqAI	TTAA	1 cut(s)	279
SatI	GCNGC	3 cut(s)	19, 22, 25
Sau96I	GGNCC	5 cut(s)	119, 272, 455, 533, 564
SchI	GAGTC	1 cut(s)	444
SduI	GDGCHC	1 cut(s)	496
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	3 cut(s)	119, 272, 533
SmiMI	CAYNNNNRTG	2 cut(s)	162, 213
Sse9I	AATT	2 cut(s)	106, 475
SsiI	CCGC	3 cut(s)	18, 21, 57
SspMI	CTAG	2 cut(s)	507, 568
TaiI	ACGT	6 cut(s)	16, 64, 70, 76, 82, 88
TasI	AATT	2 cut(s)	106, 475
TauI	GCSGC	2 cut(s)	21, 24
TfiI	GAWTC	2 cut(s)	284, 387
Tru1I	TTAA	1 cut(s)	279
Tru9I	TTAA	1 cut(s)	279
TseI	GCWGC	1 cut(s)	24
TspDTI	ATGAA	3 cut(s)	276, 297, 343
Van91I	CCANNNNNTGG	2 cut(s)	14, 530
VpaK11BI	GGWCC	3 cut(s)	119, 272, 533
VspI	ATTAAT	1 cut(s)	279
XagI	CCTNNNNNAGG	1 cut(s)	540
XspI	CTAG	2 cut(s)	507, 568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.