AT3G04560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014542
Physical Location & Seq
Reverse (-)
1227360 .. 1229763
2404 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G04560.1

Sequence Viewer

Length: 1254 bp
ATGGCGGAAAATCTATTCTCAGGGCTGCCACCTCCTTCTTCATCTCAGCAGCAAGAGCTACCAATTTCTCCAATACCAGACGAGTCAAAGATTGAAACTTCCTCTCCAGCTCCGATTCTGGTTCTCAAGAGTGCCCTAAAGCGATCGAAGCCAGAAGAATCTGCACCCAATCTTTCAGCTCCTCCTGTTCTCAAGAGCGCACTAAAGCGGTCAAAACCATCAGAATCTACTCCGGAACCAGTACCAGAACCGGAAGCTCCTAAAAAGCGTCTACAGTTTAAGACATCAACCGATGCATCAGAGGAACAAGTGATAGAAGCTATGCAGAAGATAACATCTCATATCAAGAACCCTTCCAAATTCTCCAAAGCCTCGAAGCTTGCTATACGGCTGATCCAAGCTGGTAGTGTGAAGCCAGAAACAAGCAGCTATTTTATTGCGATACTTGAAGCTGCCATGTCGTCTAAAACTCCTTGTACAGATCGCTCGGTTCGAGCAGACTATCATGCATTGTTCTCGGCAGCTCAGGATGTAGCCGAGTGCCTTGATAAAAGCCAGAAGAATCTGTTGACCATATGGACATTCAAAGCAGTTGTGGCTAATGACCTCTTCACTGATGACAGCTTTATGTTTTCCAAGACTGCTACTCGTATAAAGGAGGCTATATCTGATCTTCCGGTTTCAACCGAGGAGGATGATGTGGAAGAAGCAGCTGCTCTTGAAGAAGCAGCGGTGAAAGACAATGGAGATGGCCAGACAACGCAGGACGTGGCTGAAGCTGCTTCAGCTGGAGATAATGAGGCTGTCGAGTCTGATCCATTTGGACTAGATGCCTGGATTCCCAGTTCTGGAAAGAAAAATGGTAAAACAAAGATAAAGAGAACAAATGAAGATCCAGATGCCGAAGAGAATAAGAGGTTTCTCAGGTCAAAAAGAGAAGCTTTGATTACATGCTTGGAGATTGCTGCACGCCGTTACAAAGTTCCATGGTGCCAAACAGTTATAGACATATTGGTGAAACATGCCTTTGAGAACGTGTCAAGGTTCACATCACAGCAGAGACAAGCAGTGGAGAAACTCTGGGCTTCTGTTCGAGAACAACATCTCCGTAGGAAGCAAGGCAAATCAGTCACAGGAAAACTAGACGTTACAGCTTTTGAATCGCTTCAGGATAAATACGCCAACGAGAAAATGAGCATCCGAAGCTCAGTTGGAGCCAGCGGTGAACGCCGTGCACAGCAATGGCTCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

417

Amino Acids

45.88

Weight (kDa)

6.52

Isoelectric Point (pI)

64.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04560
fragaria_vesca FvH4_6g02310
malus_domestica MD04G1228300.v1.1 MD04G1228400.v1.1 MD12G1245500.v1.1
prunus_persica Prupe.6G348300_v2.0.a1
pyrus_communis pycom12g22500
rosa_chinensis RchiOBHm_Chr3g0450061
rosa_laevigata RLG00000025760
rosa_multiflora Rmu_sc0002646.1_g000024
rosa_roxburghii Rroxscaffold_6G00427840
rosa_rugosa Rorug02G0625200
rosa_samantha Rh3AG024300 Rh3BG024900 Rh3CG023800 Rh3DG024900
rosa_wichuraiana Rw3G001940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 990
AccI GTMKAC 1 cut(s) 271
AccIII TCCGGA 1 cut(s) 232
AciI CCGC 4 cut(s) 5, 208, 731, 1221
AclWI GGATC 3 cut(s) 388, 809, 887
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 359
AcuI CTGAAG 3 cut(s) 768, 795, 1151
AfaI GTAC 2 cut(s) 243, 478
AfiI CCNNNNNNNGG 1 cut(s) 848
AflIII ACRYGT 1 cut(s) 1035
AgsI TTSAA 6 cut(s) 95, 449, 586, 684, 722, 1160
AjiI CACGTC 1 cut(s) 769
AjnI CCWGG 1 cut(s) 833
AloI GAACNNNNNNTCC 4 cut(s) 829, 861, 1089, 1121
Alw21I GWGCWC 1 cut(s) 1237
Alw26I GTCTC 1 cut(s) 1054
Alw44I GTGCAC 1 cut(s) 1233
AlwI GGATC 3 cut(s) 388, 809, 887
Aor13HI TCCGGA 1 cut(s) 232
AoxI GGCC 1 cut(s) 751
ApaLI GTGCAC 1 cut(s) 1233
ApoI RAATTY 1 cut(s) 359
Asp700I GAANNNNTTC 1 cut(s) 1164
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 745, 1027, 1235
BaeGI GKGCMC 2 cut(s) 136, 1237
BalI TGGCCA 1 cut(s) 753
BanI GGYRCC 1 cut(s) 990
Bbv12I GWGCWC 1 cut(s) 1237
BccI CCATC 2 cut(s) 226, 743
BceAI ACGGC 3 cut(s) 404, 957, 1215
BcgI CGANNNNNNTGC 2 cut(s) 498, 532
BciT130I CCWGG 1 cut(s) 835
BcoDI GTCTC 1 cut(s) 1054
BfaI CTAG 2 cut(s) 827, 1142
BfmI CTRYAG 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 835
BmgBI CACGTC 1 cut(s) 769
BmiI GGNNCC 3 cut(s) 237, 992, 1216
BmrFI CCNGG 1 cut(s) 835
BmrI ACTGGG 1 cut(s) 837
BmsI GCATC 5 cut(s) 283, 305, 820, 889, 1206
BmuI ACTGGG 1 cut(s) 837
BpmI CTGGAG 2 cut(s) 90, 810
Bpu10I CCTNAGC 1 cut(s) 525
BpuEI CTTGAG 2 cut(s) 110, 176
BsaJI CCNNGG 2 cut(s) 687, 986
BsaWI WCCGGW 3 cut(s) 232, 250, 676
BsaXI ACNNNNNCTCC 4 cut(s) 88, 118, 1089, 1119
Bsc4I CCNNNNNNNGG 1 cut(s) 848
Bse1I ACTGG 2 cut(s) 239, 843
Bse3DI GCAATG 1 cut(s) 1247
BseAI TCCGGA 1 cut(s) 232
BseBI CCWGG 1 cut(s) 835
BseDI CCNNGG 2 cut(s) 687, 986
BseGI GGATG 3 cut(s) 535, 700, 1197
BseLI CCNNNNNNNGG 1 cut(s) 848
BseMI GCAATG 1 cut(s) 1247
BseMII CTCAG 5 cut(s) 33, 59, 539, 937, 1221
BseNI ACTGG 2 cut(s) 239, 843
BseRI GAGGAG 2 cut(s) 171, 704
BseSI GKGCMC 2 cut(s) 136, 1237
BsgI GTGCAG 2 cut(s) 147, 951
Bsh1285I CGRYCG 1 cut(s) 146
BshFI GGCC 1 cut(s) 753
BshNI GGYRCC 1 cut(s) 990
BsiEI CGRYCG 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 1237
BsiSI CCGG 3 cut(s) 233, 251, 677
BslI CCNNNNNNNGG 1 cut(s) 848
BsmAI GTCTC 1 cut(s) 1054
BsnI GGCC 1 cut(s) 753
Bsp1286I GDGCHC 2 cut(s) 136, 1237
Bsp13I TCCGGA 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 476
Bsp143I GATC 6 cut(s) 143, 393, 481, 670, 814, 892
Bsp19I CCATGG 1 cut(s) 986
BspACI CCGC 4 cut(s) 5, 208, 731, 1221
BspANI GGCC 1 cut(s) 753
BspCNI CTCAG 5 cut(s) 32, 58, 538, 936, 1220
BspEI TCCGGA 1 cut(s) 232
BspLI GGNNCC 3 cut(s) 237, 992, 1216
BspPI GGATC 3 cut(s) 388, 809, 887
BspT107I GGYRCC 1 cut(s) 990
BsrDI GCAATG 1 cut(s) 1247
BsrGI TGTACA 1 cut(s) 476
BsrI ACTGG 2 cut(s) 239, 843
BssECI CCNNGG 2 cut(s) 687, 986
BssMI GATC 6 cut(s) 143, 393, 481, 670, 814, 892
BssT1I CCWWGG 1 cut(s) 986
Bst2UI CCWGG 1 cut(s) 835
Bst4CI ACNGT 2 cut(s) 276, 1000
Bst6I CTCTTC 2 cut(s) 614, 900
BstAUI TGTACA 1 cut(s) 476
BstC8I GCNNGC 3 cut(s) 381, 970, 1219
BstDEI CTNAG 5 cut(s) 19, 45, 525, 923, 1207
BstDSI CCRYGG 1 cut(s) 986
BstF5I GGATG 3 cut(s) 535, 700, 1197
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 6 cut(s) 146, 396, 484, 673, 817, 895
BstMAI GTCTC 1 cut(s) 1054
BstMBI GATC 6 cut(s) 143, 393, 481, 670, 814, 892
BstMCI CGRYCG 1 cut(s) 146
BstMWI GCNNNNNNNGC 7 cut(s) 55, 148, 596, 779, 785, 1203, 1227
BstNI CCWGG 1 cut(s) 835
BstNSI RCATGY 2 cut(s) 954, 1025
BstSCI CCNGG 1 cut(s) 833
BstSFI CTRYAG 1 cut(s) 272
BstSLI GKGCMC 2 cut(s) 136, 1237
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
BsuRI GGCC 1 cut(s) 753
BtgI CCRYGG 1 cut(s) 986
BtrI CACGTC 1 cut(s) 769
BtsCI GGATG 3 cut(s) 535, 700, 1197
BtsI GCAGTG 1 cut(s) 1074
BtsIMutI CAGTG 2 cut(s) 612, 1074
Cac8I GCNNGC 3 cut(s) 381, 970, 1219
CfoI GCGC 1 cut(s) 200
CseI GACGC 1 cut(s) 257
Csp6I GTAC 2 cut(s) 242, 477
CviAII CATG 5 cut(s) 457, 506, 951, 987, 1022
CviQI GTAC 2 cut(s) 242, 477
DdeI CTNAG 5 cut(s) 19, 45, 525, 923, 1207
DpnI GATC 6 cut(s) 145, 395, 483, 672, 816, 894
DpnII GATC 6 cut(s) 143, 393, 481, 670, 814, 892
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 2 cut(s) 614, 900
EarI CTCTTC 2 cut(s) 614, 900
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 1 cut(s) 986
Eco57I CTGAAG 3 cut(s) 768, 795, 1151
EcoRII CCWGG 1 cut(s) 833
EcoT14I CCWWGG 1 cut(s) 986
EcoT22I ATGCAT 2 cut(s) 298, 511
ErhI CCWWGG 1 cut(s) 986
FaeI CATG 5 cut(s) 460, 509, 954, 990, 1025
FalI AAGNNNNNCTT 2 cut(s) 925, 957
FatI CATG 5 cut(s) 456, 505, 950, 986, 1021
FauNDI CATATG 1 cut(s) 575
FblI GTMKAC 1 cut(s) 271
FokI GGATG 3 cut(s) 542, 707, 1184
FspBI CTAG 2 cut(s) 827, 1142
GlaI GCGC 1 cut(s) 199
GsuI CTGGAG 2 cut(s) 90, 810
HaeIII GGCC 1 cut(s) 753
HapII CCGG 3 cut(s) 233, 251, 677
HgaI GACGC 1 cut(s) 257
HhaI GCGC 1 cut(s) 200
Hin1II CATG 5 cut(s) 460, 509, 954, 990, 1025
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HincII GTYRAC 1 cut(s) 570
HindII GTYRAC 1 cut(s) 570
HindIII AAGCTT 2 cut(s) 377, 939
HinfI GANTC 8 cut(s) 83, 115, 158, 224, 562, 809, 838, 1160
HpaII CCGG 3 cut(s) 233, 251, 677
HphI GGTGA 3 cut(s) 745, 1027, 1235
Hpy166II GTNNAC 5 cut(s) 272, 570, 1047, 1226, 1235
Hpy188I TCNGA 6 cut(s) 114, 223, 301, 670, 814, 1202
Hpy8I GTNNAC 5 cut(s) 272, 570, 1047, 1226, 1235
HpyAV CCTTC 2 cut(s) 45, 363
HpyCH4III ACNGT 2 cut(s) 276, 1000
HpyCH4IV ACGT 3 cut(s) 768, 1035, 1146
HpyCH4V TGCA 6 cut(s) 164, 296, 325, 509, 968, 1235
HpyF10VI GCNNNNNNNGC 7 cut(s) 55, 148, 596, 779, 785, 1203, 1227
HpyF3I CTNAG 5 cut(s) 19, 45, 525, 923, 1207
HpySE526I ACGT 3 cut(s) 768, 1035, 1146
Hsp92II CATG 5 cut(s) 460, 509, 954, 990, 1025
HspAI GCGC 1 cut(s) 198
Kpn2I TCCGGA 1 cut(s) 232
Kzo9I GATC 6 cut(s) 143, 393, 481, 670, 814, 892
LmnI GCTCC 4 cut(s) 115, 184, 262, 1214
LweI GCATC 5 cut(s) 283, 305, 820, 889, 1206
MaeI CTAG 2 cut(s) 827, 1142
MaeII ACGT 3 cut(s) 768, 1035, 1146
MaeIII GTNAC 3 cut(s) 974, 1129, 1147
MalI GATC 6 cut(s) 145, 395, 483, 672, 816, 894
MboI GATC 6 cut(s) 143, 393, 481, 670, 814, 892
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 2 cut(s) 136, 1237
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 2 cut(s) 63, 359
MluNI TGGCCA 1 cut(s) 753
MlyI GAGTC 2 cut(s) 92, 818
MmeI TCCRAC 1 cut(s) 1192
Mox20I TGGCCA 1 cut(s) 753
Mph1103I ATGCAT 2 cut(s) 298, 511
MroI TCCGGA 1 cut(s) 232
MroXI GAANNNNTTC 1 cut(s) 1164
MscI TGGCCA 1 cut(s) 753
MseI TTAA 2 cut(s) 279, 1252
MslI CAYNNNNRTG 2 cut(s) 1013, 1240
Msp20I TGGCCA 1 cut(s) 753
MspA1I CMGCKG 4 cut(s) 713, 731, 788, 1221
MspI CCGG 3 cut(s) 233, 251, 677
MspR9I CCNGG 1 cut(s) 835
MvaI CCWGG 1 cut(s) 835
MwoI GCNNNNNNNGC 7 cut(s) 55, 148, 596, 779, 785, 1203, 1227
NcoI CCATGG 1 cut(s) 986
NdeI CATATG 1 cut(s) 575
NdeII GATC 6 cut(s) 143, 393, 481, 670, 814, 892
NlaIII CATG 5 cut(s) 460, 509, 954, 990, 1025
NlaIV GGNNCC 3 cut(s) 237, 992, 1216
NmeAIII GCCGAG 2 cut(s) 497, 562
NmuCI GTSAC 1 cut(s) 1129
NsiI ATGCAT 2 cut(s) 298, 511
NspI RCATGY 2 cut(s) 954, 1025
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 1164
PfeI GAWTC 6 cut(s) 115, 158, 224, 562, 838, 1160
Ple19I CGATCG 1 cut(s) 146
PleI GAGTC 2 cut(s) 91, 817
PpsI GAGTC 2 cut(s) 91, 817
Psp6I CCWGG 1 cut(s) 833
PspGI CCWGG 1 cut(s) 833
PspN4I GGNNCC 3 cut(s) 237, 992, 1216
PsuI RGATCY 1 cut(s) 892
PvuI CGATCG 1 cut(s) 146
PvuII CAGCTG 2 cut(s) 713, 788
RsaI GTAC 2 cut(s) 243, 478
RsaNI GTAC 2 cut(s) 242, 477
RseI CAYNNNNRTG 2 cut(s) 1013, 1240
SaqAI TTAA 2 cut(s) 279, 1252
Sau3AI GATC 6 cut(s) 143, 393, 481, 670, 814, 892
SchI GAGTC 2 cut(s) 92, 818
ScrFI CCNGG 1 cut(s) 835
SduI GDGCHC 2 cut(s) 136, 1237
SfaNI GCATC 5 cut(s) 283, 305, 820, 889, 1206
SfcI CTRYAG 1 cut(s) 272
SmiMI CAYNNNNRTG 2 cut(s) 1013, 1240
SmlI CTYRAG 2 cut(s) 125, 191
SmoI CTYRAG 2 cut(s) 125, 191
Sse9I AATT 2 cut(s) 63, 359
SsiI CCGC 4 cut(s) 5, 208, 731, 1221
SspMI CTAG 2 cut(s) 827, 1142
StyD4I CCNGG 1 cut(s) 833
StyI CCWWGG 1 cut(s) 986
TaaI ACNGT 2 cut(s) 276, 1000
TaiI ACGT 3 cut(s) 771, 1038, 1149
TaqI TCGA 5 cut(s) 146, 374, 493, 807, 1093
TasI AATT 2 cut(s) 63, 359
TatI WGTACW 1 cut(s) 476
TfiI GAWTC 6 cut(s) 115, 158, 224, 562, 838, 1160
Tru1I TTAA 2 cut(s) 279, 1252
Tru9I TTAA 2 cut(s) 279, 1252
TscAI CASTG 2 cut(s) 619, 1074
TseFI GTSAC 1 cut(s) 1129
Tsp45I GTSAC 1 cut(s) 1129
TspDTI ATGAA 2 cut(s) 30, 903
TspGWI ACGGA 1 cut(s) 1097
TspRI CASTG 2 cut(s) 619, 1074
VneI GTGCAC 1 cut(s) 1233
XapI RAATTY 1 cut(s) 359
XceI RCATGY 2 cut(s) 954, 1025
XmiI GTMKAC 1 cut(s) 271
XmnI GAANNNNTTC 1 cut(s) 1164
XspI CTAG 2 cut(s) 827, 1142
Zsp2I ATGCAT 2 cut(s) 298, 511
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.