FvH4_6g02310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014542
Physical Location & Seq
Reverse (-)
1339586 .. 1342968
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02310.t1

Sequence Viewer

Length: 1275 bp
ATGGCCGACGACTTGTTTGGAGGTCTGCCTCCTCCTTCTTCTGCAAACCCTCTTCCCTCTTCCGAGCCTCAACAACCCAAACCCAAACCAAAGTTCGCTGCTTTTACTACAGACTCTTCTTCCTCTACACCATCTCCAGCTGAAGCTCCACAACCAGTTCTGAAAAGCGCGTTGAAGAAGCCTAAACAGCCTTCTGAGCCGAACCCAGTTCTCAAAAGCGCCCTCAAAAGGCCCAAGGAACCCTCTGAACCAAACCCAGAAGCCACTGTGCCTGGAAAGAAGTTGAGGTTTAAAACCACGACAGATGCCTCAGAGCAACAGGTTATAGAGGCCATGCAGAAGATAGCTTCACATATAAAGAATTCTACAAAGTTTGGGAAGGCTTCAAAGCTTGCCATCCAGCTAATTCAGGCCGGAAGTGTCAAAGCCGAAACTAGTGATTACTTTTTTTCCATATTAGAGGCCGCGATGACATCATCTACCTCTTGCACAGATCCTTCCATACGAGCAGATATCCATGCATTGTTCTCAACAGCACAAGATGCCTATGAGTGTCTCAATAAGAAGCAAAAGAATCAGTTAACAACTTGGACGATCAGAGCTGTGGTGGCAAATGATCTACTCACTGATGACAGCTTCCTGTTTTCGAAAACAGCTCGACAAGTACAAGAAGCAATATCTAATCTGCCAGTTGCAACTGAGGATGATGACAGAGATGAATCAGCTGTCCTGGAAGAGGAAACTAAAACAACAGATGAGGATAATTTAATGAAGAAGGACATGACTTCAGAAATACCAGATGAAGAAAATAATGAGGAAGAGTCAGATCCATTTGGGCTTGATGCATTTTTACCTCCGAGCTCTGTGAAGAAAGGAGATAGAGTAAAGGGAAAGAAAGTTGCAACTCCCAAAGACAGGGAGGAGGAAGAGACCAAGATATTCCTCAAGTCACAGAGAGAAGCCTTGGTCCTTTGTTTAGAGATAGCTGCTCGGCGTTATAAAACTCCATGGTGCCAGACAGTCATAGACATATTAGCAAAGCATGCTTTTGATAACATACGGAGGTTCACATCTAAACAACGGAATGCTATTGAGAAACTTTGGGCTTCCATACGGGAACAGCATAATCGGAGAAAACAGGGGAAAACAGTTACCGGGAAACTTGACGTGAATGGTTTTGAATGGCTGCAGGAAAAATATGCTAATGAGAAGATCAGCATTCGGCATTCTGTTGGAGGTAGTGGGGATCGTAAGACTGAAATGTGGCTTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

425

Amino Acids

47.15

Weight (kDa)

6.99

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04560
fragaria_vesca FvH4_6g02310
malus_domestica MD04G1228300.v1.1 MD04G1228400.v1.1 MD12G1245500.v1.1
prunus_persica Prupe.6G348300_v2.0.a1
pyrus_communis pycom12g22500
rosa_chinensis RchiOBHm_Chr3g0450061
rosa_laevigata RLG00000025760
rosa_multiflora Rmu_sc0002646.1_g000024
rosa_roxburghii Rroxscaffold_6G00427840
rosa_rugosa Rorug02G0625200
rosa_samantha Rh3AG024300 Rh3BG024900 Rh3CG023800 Rh3DG024900
rosa_wichuraiana Rw3G001940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 999
AccB1I GGYRCC 1 cut(s) 1011
AccII CGCG 2 cut(s) 170, 467
AciI CCGC 1 cut(s) 465
AclWI GGATC 3 cut(s) 488, 821, 1254
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 361
AcuI CTGAAG 2 cut(s) 162, 771
AfaI GTAC 1 cut(s) 666
AfiI CCNNNNNNNGG 3 cut(s) 228, 736, 915
AgsI TTSAA 3 cut(s) 175, 387, 1181
AhlI ACTAGT 1 cut(s) 434
AjiI CACGTC 1 cut(s) 1168
AjnI CCWGG 2 cut(s) 271, 729
AjuI GAANNNNNNNTTGG 3 cut(s) 77, 109, 1251
Alw21I GWGCWC 1 cut(s) 863
Alw26I GTCTC 2 cut(s) 560, 923
AlwI GGATC 3 cut(s) 488, 821, 1254
AoxI GGCC 5 cut(s) 3, 230, 330, 411, 462
ApeKI GCWGC 3 cut(s) 98, 986, 1186
ApoI RAATTY 1 cut(s) 361
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspLEI GCGC 2 cut(s) 170, 221
AspS9I GGNCC 2 cut(s) 231, 967
AsuC2I CCSGG 1 cut(s) 1156
AsuII TTCGAA 1 cut(s) 647
AvaII GGWCC 1 cut(s) 967
BanI GGYRCC 1 cut(s) 1011
BanII GRGCYC 1 cut(s) 863
Bbv12I GWGCWC 1 cut(s) 863
BbvI GCAGC 3 cut(s) 85, 973, 1173
BccI CCATC 2 cut(s) 139, 404
BciT130I CCWGG 2 cut(s) 273, 731
BcnI CCSGG 1 cut(s) 1156
BcoDI GTCTC 2 cut(s) 560, 923
BcuI ACTAGT 1 cut(s) 434
BfaI CTAG 1 cut(s) 435
BfmI CTRYAG 2 cut(s) 108, 1187
BfoI RGCGCY 1 cut(s) 222
BisI GCNGC 4 cut(s) 99, 465, 987, 1187
BlsI GCNGC 4 cut(s) 100, 466, 988, 1188
Bme1390I CCNGG 3 cut(s) 273, 731, 1156
Bme18I GGWCC 1 cut(s) 967
BmgBI CACGTC 1 cut(s) 1168
BmgT120I GGNCC 2 cut(s) 231, 967
BmiI GGNNCC 2 cut(s) 240, 1013
BmrFI CCNGG 3 cut(s) 273, 731, 1156
BmrI ACTGGG 1 cut(s) 200
BmsI GCATC 3 cut(s) 295, 532, 832
BmuI ACTGGG 1 cut(s) 200
BpmI CTGGAG 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 929
BpuMI CCSGG 1 cut(s) 1156
BsaI GGTCTC 1 cut(s) 923
BsaJI CCNNGG 3 cut(s) 234, 963, 1007
BsaXI ACNNNNNCTCC 4 cut(s) 118, 148, 867, 897
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 736, 915
Bse1I ACTGG 3 cut(s) 155, 206, 689
BseBI CCWGG 2 cut(s) 273, 731
BseDI CCNNGG 3 cut(s) 234, 963, 1007
BseGI GGATG 2 cut(s) 396, 709
BseLI CCNNNNNNNGG 3 cut(s) 228, 736, 915
BseMII CTCAG 3 cut(s) 186, 324, 690
BseNI ACTGG 3 cut(s) 155, 206, 689
BseRI GAGGAG 2 cut(s) 21, 935
BseXI GCAGC 3 cut(s) 85, 973, 1173
Bsh1236I CGCG 2 cut(s) 170, 467
BshFI GGCC 5 cut(s) 5, 232, 332, 413, 464
BshNI GGYRCC 1 cut(s) 1011
BsiHKAI GWGCWC 1 cut(s) 863
BsiSI CCGG 2 cut(s) 414, 1155
BslI CCNNNNNNNGG 3 cut(s) 228, 736, 915
BsmAI GTCTC 2 cut(s) 560, 923
BsmI GAATGC 3 cut(s) 1090, 1218, 1225
BsnI GGCC 5 cut(s) 5, 232, 332, 413, 464
Bso31I GGTCTC 1 cut(s) 923
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 1 cut(s) 863
Bsp143I GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
Bsp19I CCATGG 1 cut(s) 1007
BspACI CCGC 1 cut(s) 465
BspANI GGCC 5 cut(s) 5, 232, 332, 413, 464
BspCNI CTCAG 3 cut(s) 187, 323, 691
BspFNI CGCG 2 cut(s) 170, 467
BspLI GGNNCC 2 cut(s) 240, 1013
BspMAI CTGCAG 1 cut(s) 1191
BspPI GGATC 3 cut(s) 488, 821, 1254
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 1011
BspTNI GGTCTC 1 cut(s) 923
BsrI ACTGG 3 cut(s) 155, 206, 689
BssECI CCNNGG 3 cut(s) 234, 963, 1007
BssMI GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
BssT1I CCWWGG 3 cut(s) 234, 963, 1007
Bst2UI CCWGG 2 cut(s) 273, 731
Bst4CI ACNGT 3 cut(s) 268, 1021, 1150
Bst6I CTCTTC 6 cut(s) 57, 64, 121, 729, 813, 921
BstAPI GCANNNNNTGC 2 cut(s) 542, 1043
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 393, 1044
BstDEI CTNAG 3 cut(s) 195, 310, 699
BstDSI CCRYGG 1 cut(s) 1007
BstENI CCTNNNNNAGG 1 cut(s) 734
BstF5I GGATG 2 cut(s) 396, 709
BstFNI CGCG 2 cut(s) 170, 467
BstH2I RGCGCY 1 cut(s) 222
BstHHI GCGC 2 cut(s) 170, 221
BstKTI GATC 6 cut(s) 496, 597, 619, 829, 1215, 1249
BstMAI GTCTC 2 cut(s) 560, 923
BstMBI GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
BstMWI GCNNNNNNNGC 5 cut(s) 187, 196, 542, 608, 1043
BstNI CCWGG 2 cut(s) 273, 731
BstNSI RCATGY 1 cut(s) 1046
BstSCI CCNGG 3 cut(s) 271, 729, 1154
BstSFI CTRYAG 2 cut(s) 108, 1187
BstUI CGCG 2 cut(s) 170, 467
BstV1I GCAGC 3 cut(s) 85, 973, 1173
BstX2I RGATCY 2 cut(s) 493, 826
BstYI RGATCY 2 cut(s) 493, 826
BsuRI GGCC 5 cut(s) 5, 232, 332, 413, 464
BtgI CCRYGG 1 cut(s) 1007
BtgZI GCGATG 1 cut(s) 482
BtrI CACGTC 1 cut(s) 1168
BtsCI GGATG 2 cut(s) 396, 709
BtsIMutI CAGTG 2 cut(s) 264, 624
Cac8I GCNNGC 2 cut(s) 393, 1044
CfoI GCGC 2 cut(s) 170, 221
Cfr13I GGNCC 2 cut(s) 231, 967
Csp6I GTAC 1 cut(s) 665
CviAII CATG 5 cut(s) 334, 518, 781, 1008, 1043
CviQI GTAC 1 cut(s) 665
DdeI CTNAG 3 cut(s) 195, 310, 699
DpnI GATC 6 cut(s) 495, 596, 618, 828, 1214, 1248
DpnII GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
DraI TTTAAA 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 6 cut(s) 57, 64, 121, 729, 813, 921
EarI CTCTTC 6 cut(s) 57, 64, 121, 729, 813, 921
Ecl136II GAGCTC 1 cut(s) 861
Eco130I CCWWGG 3 cut(s) 234, 963, 1007
Eco24I GRGCYC 1 cut(s) 863
Eco31I GGTCTC 1 cut(s) 923
Eco32I GATATC 1 cut(s) 514
Eco47I GGWCC 1 cut(s) 967
Eco53kI GAGCTC 1 cut(s) 861
Eco57I CTGAAG 2 cut(s) 162, 771
EcoICRI GAGCTC 1 cut(s) 861
EcoNI CCTNNNNNAGG 1 cut(s) 734
EcoRI GAATTC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 271, 729
EcoRV GATATC 1 cut(s) 514
EcoT14I CCWWGG 3 cut(s) 234, 963, 1007
EcoT22I ATGCAT 2 cut(s) 523, 847
EcoT38I GRGCYC 1 cut(s) 863
ErhI CCWWGG 3 cut(s) 234, 963, 1007
FaeI CATG 5 cut(s) 337, 521, 784, 1011, 1046
FatI CATG 5 cut(s) 333, 517, 780, 1007, 1042
Fnu4HI GCNGC 4 cut(s) 99, 465, 987, 1187
FokI GGATG 2 cut(s) 383, 716
FriOI GRGCYC 1 cut(s) 863
Fsp4HI GCNGC 4 cut(s) 99, 465, 987, 1187
FspBI CTAG 1 cut(s) 435
GlaI GCGC 2 cut(s) 169, 220
GluI GCNGC 4 cut(s) 99, 465, 987, 1187
GsuI CTGGAG 1 cut(s) 120
HaeII RGCGCY 1 cut(s) 222
HaeIII GGCC 5 cut(s) 5, 232, 332, 413, 464
HapII CCGG 2 cut(s) 414, 1155
HhaI GCGC 2 cut(s) 170, 221
Hin1II CATG 5 cut(s) 337, 521, 784, 1011, 1046
Hin6I GCGC 2 cut(s) 168, 219
HinP1I GCGC 2 cut(s) 168, 219
HincII GTYRAC 1 cut(s) 582
HindII GTYRAC 1 cut(s) 582
HindIII AAGCTT 1 cut(s) 389
HinfI GANTC 4 cut(s) 113, 574, 719, 821
HpaI GTTAAC 1 cut(s) 582
HpaII CCGG 2 cut(s) 414, 1155
Hpy166II GTNNAC 2 cut(s) 582, 1068
Hpy8I GTNNAC 2 cut(s) 582, 1068
Hpy99I CGWCG 1 cut(s) 11
HpyAV CCTTC 5 cut(s) 45, 201, 373, 507, 769
HpyCH4III ACNGT 3 cut(s) 268, 1021, 1150
HpyCH4IV ACGT 1 cut(s) 1167
HpyCH4V TGCA 8 cut(s) 44, 337, 489, 521, 695, 845, 902, 1189
HpyF10VI GCNNNNNNNGC 5 cut(s) 187, 196, 542, 608, 1043
HpyF3I CTNAG 3 cut(s) 195, 310, 699
HpySE526I ACGT 1 cut(s) 1167
Hsp92II CATG 5 cut(s) 337, 521, 784, 1011, 1046
HspAI GCGC 2 cut(s) 168, 219
KspAI GTTAAC 1 cut(s) 582
Kzo9I GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
LmnI GCTCC 1 cut(s) 151
Lsp1109I GCAGC 3 cut(s) 85, 973, 1173
LweI GCATC 3 cut(s) 295, 532, 832
MaeI CTAG 1 cut(s) 435
MaeII ACGT 1 cut(s) 1167
MaeIII GTNAC 2 cut(s) 948, 1150
MalI GATC 6 cut(s) 495, 596, 618, 828, 1214, 1248
MboI GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
MflI RGATCY 2 cut(s) 493, 826
MhlI GDGCHC 1 cut(s) 863
MluCI AATT 3 cut(s) 361, 405, 763
MlyI GAGTC 2 cut(s) 107, 830
MmeI TCCRAC 1 cut(s) 1213
Mph1103I ATGCAT 2 cut(s) 523, 847
MseI TTAA 3 cut(s) 291, 581, 767
MspA1I CMGCKG 2 cut(s) 140, 725
MspI CCGG 2 cut(s) 414, 1155
MspR9I CCNGG 3 cut(s) 273, 731, 1156
Mva1269I GAATGC 3 cut(s) 1090, 1218, 1225
MvaI CCWGG 2 cut(s) 273, 731
MvnI CGCG 2 cut(s) 170, 467
MwoI GCNNNNNNNGC 5 cut(s) 187, 196, 542, 608, 1043
NciI CCSGG 1 cut(s) 1156
NcoI CCATGG 1 cut(s) 1007
NdeII GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
NlaIII CATG 5 cut(s) 337, 521, 784, 1011, 1046
NlaIV GGNNCC 2 cut(s) 240, 1013
NmeAIII GCCGAG 1 cut(s) 970
NmuCI GTSAC 1 cut(s) 948
NsiI ATGCAT 2 cut(s) 523, 847
NspI RCATGY 1 cut(s) 1046
NspV TTCGAA 1 cut(s) 647
PaeI GCATGC 1 cut(s) 1046
PctI GAATGC 3 cut(s) 1090, 1218, 1225
PfeI GAWTC 2 cut(s) 574, 719
PfoI TCCNGGA 1 cut(s) 729
PkrI GCNGC 4 cut(s) 100, 466, 988, 1188
PleI GAGTC 2 cut(s) 107, 829
PpsI GAGTC 2 cut(s) 107, 829
PsiI TTATAA 1 cut(s) 999
Psp124BI GAGCTC 1 cut(s) 863
Psp6I CCWGG 2 cut(s) 271, 729
PspGI CCWGG 2 cut(s) 271, 729
PspN4I GGNNCC 2 cut(s) 240, 1013
PspPI GGNCC 2 cut(s) 231, 967
PstI CTGCAG 1 cut(s) 1191
PsuI RGATCY 2 cut(s) 493, 826
PvuII CAGCTG 2 cut(s) 140, 725
RsaI GTAC 1 cut(s) 666
RsaNI GTAC 1 cut(s) 665
SacI GAGCTC 1 cut(s) 863
SaqAI TTAA 3 cut(s) 291, 581, 767
SatI GCNGC 4 cut(s) 99, 465, 987, 1187
Sau3AI GATC 6 cut(s) 493, 594, 616, 826, 1212, 1246
Sau96I GGNCC 2 cut(s) 231, 967
SchI GAGTC 2 cut(s) 107, 830
ScrFI CCNGG 3 cut(s) 273, 731, 1156
SduI GDGCHC 1 cut(s) 863
SfaNI GCATC 3 cut(s) 295, 532, 832
SfcI CTRYAG 2 cut(s) 108, 1187
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 1 cut(s) 967
SmlI CTYRAG 1 cut(s) 944
SmoI CTYRAG 1 cut(s) 944
SpeI ACTAGT 1 cut(s) 434
SphI GCATGC 1 cut(s) 1046
Sse9I AATT 3 cut(s) 361, 405, 763
SsiI CCGC 1 cut(s) 465
SspMI CTAG 1 cut(s) 435
SstI GAGCTC 1 cut(s) 863
StyD4I CCNGG 3 cut(s) 271, 729, 1154
StyI CCWWGG 3 cut(s) 234, 963, 1007
TaaI ACNGT 3 cut(s) 268, 1021, 1150
TaiI ACGT 1 cut(s) 1170
TaqI TCGA 2 cut(s) 647, 658
TasI AATT 3 cut(s) 361, 405, 763
TatI WGTACW 1 cut(s) 664
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 574, 719
Tru1I TTAA 3 cut(s) 291, 581, 767
Tru9I TTAA 3 cut(s) 291, 581, 767
TscAI CASTG 2 cut(s) 271, 631
TseFI GTSAC 1 cut(s) 948
TseI GCWGC 3 cut(s) 98, 986, 1186
Tsp45I GTSAC 1 cut(s) 948
TspDTI ATGAA 3 cut(s) 732, 785, 816
TspGWI ACGGA 2 cut(s) 1075, 1096
TspRI CASTG 2 cut(s) 271, 631
VpaK11BI GGWCC 1 cut(s) 967
XagI CCTNNNNNAGG 1 cut(s) 734
XapI RAATTY 1 cut(s) 361
XceI RCATGY 1 cut(s) 1046
XspI CTAG 1 cut(s) 435
Zsp2I ATGCAT 2 cut(s) 523, 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.