Prupe.6G348300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0014542
Physical Location & Seq
Forward (+)
29759046 .. 29761826
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G348300.1

Sequence Viewer

Length: 1266 bp
ATGGCTGACGACCTGTTTGAAGGCCTCCCTCCACCTTCTGCAAACCCTCCTCCTTCTTCTTCTGAACTTCAAGAACGGAAACCACCGCAGGAAGCGTTAAAACCACAACAAAAACGAAAAACAGCTACTTTTAACACCGCCTCTTCTTCTTCTCCCGCTCCCGCTCCTGCTCCTGCTCCTGCTCCCCCAAAACCAATTCTCAAAAGCGCCCTCAAGCGGCCTAAACCCTCTGAATCAAACGCCGAAGAAGCCCCTGTAACTGAAAAGAAGTTGAGGTTTAAAACCACGACAGATGCCTCAGAGCAGCAGGTCATTGAGGCAATGCAGAAAATAGCATCACATATAAAGAATCCTACAAAGTTTAGTAAGGCTTCAAAGCTTGCCATCCAGCTGATTCAGGCGGGAAGTGTCAAGCCTGAAACTGGTGATTACTTCTTTTCCGTTCTAGAAGCCGCAATGGCATCACCTACTTCTTGTATGGATCCTTCTCTGCGAGCCGATTACCATGCACTGTTCTCAGCCGCAAAAGATGCCTCTGAGTGTCTCAATAAGAAGCAAAAGAATCAATTAACTGCATGGAGAATCAGGGCAGTGATGGCAAATGAATTATCTACTGATGACAGCTTCCAGTTTTCAAAAACAGCTGCACAAGTAAAAGAAGCCATATCTAATCTGCCAGTTGCAACCGAGGACAATGACAGAGAGGAAGCAGCTGTGCTGGAAGATGAAACAAAGATAGCAGATCAAGATAATCAAATGGAGCAAGATATGGTTTCAGCTGCGCCGGCTGAAGAAAATAATGAGAAAGAGTCTGATCCATTTGGGCTTGATGCATTTTTAACTCCCACCCCGATGAAGAAAGATGATAAAACAAAGGGGAAAAAAGATGGAATTACCAAGATCAGGAAGGAGGAGGGGGAGACCAAGAGATTCCTCCGGTCACAAAGAGAAGCCTTGGTTCTTTGTTTAGAGATAGCTGCTCGTCGTTATAAAACGCCATGGTGCCAAACAGTAATAGACATATTAGCAAAGCATGCTTTTGATAACATTGCAAGGTTCACGTCTAAACAAAGGAATGCCATTGAGAAACTTTGGGCTTCAATTCGGGAGCAACATAATCAACGAAAACAAGGGAAATCAGTTACGGGGAAACTTGATGTCAATGCTTTTGAGTGGCTGCAGCAGAAATATGCTACTGAGAAGATCAGCATTCGGCATTCTGTTGGAGGTAGTGGGGATCGTAAAACTGAAATGTGGCTTGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

422

Amino Acids

46.7

Weight (kDa)

8.75

Isoelectric Point (pI)

56.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G04560
fragaria_vesca FvH4_6g02310
malus_domestica MD04G1228300.v1.1 MD04G1228400.v1.1 MD12G1245500.v1.1
prunus_persica Prupe.6G348300_v2.0.a1
pyrus_communis pycom12g22500
rosa_chinensis RchiOBHm_Chr3g0450061
rosa_laevigata RLG00000025760
rosa_multiflora Rmu_sc0002646.1_g000024
rosa_roxburghii Rroxscaffold_6G00427840
rosa_rugosa Rorug02G0625200
rosa_samantha Rh3AG024300 Rh3BG024900 Rh3CG023800 Rh3DG024900
rosa_wichuraiana Rw3G001940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 990
Acc36I ACCTGC 1 cut(s) 298
AccB1I GGYRCC 1 cut(s) 1002
AccBSI CCGCTC 2 cut(s) 158, 164
AciI CCGC 8 cut(s) 86, 138, 156, 162, 217, 401, 453, 522
AclWI GGATC 4 cut(s) 476, 489, 809, 1245
AcuI CTGAAG 1 cut(s) 810
AfiI CCNNNNNNNGG 3 cut(s) 216, 422, 903
AgsI TTSAA 5 cut(s) 20, 71, 375, 636, 1101
AjiI CACGTC 1 cut(s) 1062
AjuI GAANNNNNNNTTGG 1 cut(s) 1242
AluBI AGCT 8 cut(s) 125, 379, 391, 624, 644, 713, 779, 977
AluI AGCT 8 cut(s) 125, 379, 391, 624, 644, 713, 779, 977
Alw26I GTCTC 2 cut(s) 548, 914
AlwI GGATC 4 cut(s) 476, 489, 809, 1245
AoxI GGCC 2 cut(s) 22, 218
ApeKI GCWGC 7 cut(s) 304, 644, 710, 779, 977, 1177, 1180
ArsI GACNNNNNNTTYG 1 cut(s) 31
AspLEI GCGC 2 cut(s) 209, 784
AsuHPI GGTGA 2 cut(s) 437, 456
BamHI GGATCC 1 cut(s) 481
BanI GGYRCC 1 cut(s) 1002
BarI GAAGNNNNNNTAC 2 cut(s) 469, 501
BbvI GCAGC 7 cut(s) 316, 631, 722, 766, 964, 1164, 1192
BccI CCATC 3 cut(s) 392, 589, 881
BcgI CGANNNNNNTGC 2 cut(s) 488, 522
BcoDI GTCTC 2 cut(s) 548, 914
BfaI CTAG 1 cut(s) 446
BfmI CTRYAG 1 cut(s) 1178
BfoI RGCGCY 1 cut(s) 210
BfuAI ACCTGC 1 cut(s) 298
BglI GCCNNNNNGGC 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 1062
BmiI GGNNCC 2 cut(s) 483, 1004
BmsI GCATC 5 cut(s) 283, 344, 470, 520, 820
BpuEI CTTGAG 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 914
BsaJI CCNNGG 3 cut(s) 687, 954, 998
BsaWI WCCGGW 1 cut(s) 936
Bsc4I CCNNNNNNNGG 3 cut(s) 216, 422, 903
Bse118I RCCGGY 1 cut(s) 784
Bse1I ACTGG 3 cut(s) 427, 628, 677
Bse3DI GCAATG 3 cut(s) 327, 462, 1047
BseDI CCNNGG 3 cut(s) 687, 954, 998
BseGI GGATG 1 cut(s) 384
BseLI CCNNNNNNNGG 3 cut(s) 216, 422, 903
BseMI GCAATG 3 cut(s) 327, 462, 1047
BseMII CTCAG 4 cut(s) 312, 528, 531, 1188
BseNI ACTGG 3 cut(s) 427, 628, 677
BseRI GAGGAG 2 cut(s) 39, 926
BseXI GCAGC 7 cut(s) 316, 631, 722, 766, 964, 1164, 1192
BsgI GTGCAG 1 cut(s) 630
BshFI GGCC 2 cut(s) 24, 220
BshNI GGYRCC 1 cut(s) 1002
BsiSI CCGG 2 cut(s) 785, 937
BslI CCNNNNNNNGG 3 cut(s) 216, 422, 903
BsmAI GTCTC 2 cut(s) 548, 914
BsmI GAATGC 3 cut(s) 1081, 1209, 1216
BsnI GGCC 2 cut(s) 24, 220
Bso31I GGTCTC 1 cut(s) 914
Bsp143I GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
Bsp19I CCATGG 1 cut(s) 998
BspACI CCGC 8 cut(s) 86, 138, 156, 162, 217, 401, 453, 522
BspANI GGCC 2 cut(s) 24, 220
BspCNI CTCAG 4 cut(s) 311, 529, 530, 1189
BspLI GGNNCC 2 cut(s) 483, 1004
BspMAI CTGCAG 1 cut(s) 1182
BspMI ACCTGC 1 cut(s) 298
BspPI GGATC 4 cut(s) 476, 489, 809, 1245
BspT107I GGYRCC 1 cut(s) 1002
BspTNI GGTCTC 1 cut(s) 914
BsrBI CCGCTC 2 cut(s) 158, 164
BsrDI GCAATG 3 cut(s) 327, 462, 1047
BsrFI RCCGGY 1 cut(s) 784
BsrI ACTGG 3 cut(s) 427, 628, 677
BssAI RCCGGY 1 cut(s) 784
BssECI CCNNGG 3 cut(s) 687, 954, 998
BssMI GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
BssT1I CCWWGG 2 cut(s) 954, 998
Bst4CI ACNGT 2 cut(s) 513, 1012
Bst6I CTCTTC 1 cut(s) 148
BstAPI GCANNNNNTGC 2 cut(s) 530, 1034
BstC8I GCNNGC 4 cut(s) 381, 495, 786, 1035
BstDEI CTNAG 4 cut(s) 298, 517, 537, 1197
BstDSI CCRYGG 1 cut(s) 998
BstF5I GGATG 1 cut(s) 384
BstH2I RGCGCY 1 cut(s) 210
BstHHI GCGC 2 cut(s) 209, 784
BstKTI GATC 6 cut(s) 484, 745, 817, 903, 1206, 1240
BstMAI GTCTC 2 cut(s) 548, 914
BstMBI GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
BstMWI GCNNNNNNNGC 6 cut(s) 248, 458, 530, 596, 785, 1034
BstNSI RCATGY 1 cut(s) 1037
BstSFI CTRYAG 1 cut(s) 1178
BstV1I GCAGC 7 cut(s) 316, 631, 722, 766, 964, 1164, 1192
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
BsuRI GGCC 2 cut(s) 24, 220
BtgI CCRYGG 1 cut(s) 998
BtrI CACGTC 1 cut(s) 1062
BtsCI GGATG 1 cut(s) 384
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 509, 597
BveI ACCTGC 1 cut(s) 298
Cac8I GCNNGC 4 cut(s) 381, 495, 786, 1035
CfoI GCGC 2 cut(s) 209, 784
Cfr10I RCCGGY 1 cut(s) 784
CviAII CATG 4 cut(s) 506, 576, 999, 1034
DdeI CTNAG 4 cut(s) 298, 517, 537, 1197
DpnI GATC 6 cut(s) 483, 744, 816, 902, 1205, 1239
DpnII GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
DraI TTTAAA 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 148
Eco130I CCWWGG 2 cut(s) 954, 998
Eco147I AGGCCT 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 914
Eco57I CTGAAG 1 cut(s) 810
EcoT14I CCWWGG 2 cut(s) 954, 998
EcoT22I ATGCAT 1 cut(s) 835
ErhI CCWWGG 2 cut(s) 954, 998
FaeI CATG 4 cut(s) 509, 579, 1002, 1037
FatI CATG 4 cut(s) 505, 575, 998, 1033
FauI CCCGC 3 cut(s) 163, 169, 394
FokI GGATG 1 cut(s) 371
FspBI CTAG 1 cut(s) 446
GlaI GCGC 2 cut(s) 208, 783
HaeII RGCGCY 1 cut(s) 210
HaeIII GGCC 2 cut(s) 24, 220
HapII CCGG 2 cut(s) 785, 937
HhaI GCGC 2 cut(s) 209, 784
Hin1II CATG 4 cut(s) 509, 579, 1002, 1037
Hin6I GCGC 2 cut(s) 207, 782
HinP1I GCGC 2 cut(s) 207, 782
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 7 cut(s) 233, 349, 394, 562, 582, 809, 930
HpaII CCGG 2 cut(s) 785, 937
HphI GGTGA 2 cut(s) 437, 456
Hpy166II GTNNAC 1 cut(s) 1059
Hpy188I TCNGA 5 cut(s) 64, 232, 301, 538, 814
Hpy188III TCNNGA 5 cut(s) 71, 446, 746, 904, 1106
Hpy8I GTNNAC 1 cut(s) 1059
Hpy99I CGWCG 1 cut(s) 987
HpyAV CCTTC 5 cut(s) 14, 45, 63, 495, 901
HpyCH4III ACNGT 2 cut(s) 513, 1012
HpyCH4IV ACGT 1 cut(s) 1061
HpyCH4V TGCA 9 cut(s) 41, 325, 509, 575, 647, 683, 833, 1052, 1180
HpyF10VI GCNNNNNNNGC 6 cut(s) 248, 458, 530, 596, 785, 1034
HpyF3I CTNAG 4 cut(s) 298, 517, 537, 1197
HpySE526I ACGT 1 cut(s) 1061
Hsp92II CATG 4 cut(s) 509, 579, 1002, 1037
HspAI GCGC 2 cut(s) 207, 782
KroI GCCGGC 1 cut(s) 784
KroNI GCCGGC 1 cut(s) 786
Kzo9I GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
LmnI GCTCC 7 cut(s) 163, 169, 175, 181, 187, 760, 1108
Lsp1109I GCAGC 7 cut(s) 316, 631, 722, 766, 964, 1164, 1192
LweI GCATC 5 cut(s) 283, 344, 470, 520, 820
MaeI CTAG 1 cut(s) 446
MaeII ACGT 1 cut(s) 1061
MaeIII GTNAC 3 cut(s) 256, 939, 1141
MalI GATC 6 cut(s) 483, 744, 816, 902, 1205, 1239
MbiI CCGCTC 2 cut(s) 158, 164
MboI GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
MflI RGATCY 1 cut(s) 481
MluCI AATT 5 cut(s) 195, 566, 605, 891, 1101
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 1 cut(s) 1204
Mph1103I ATGCAT 1 cut(s) 835
MroNI GCCGGC 1 cut(s) 784
MseI TTAA 5 cut(s) 98, 132, 279, 569, 839
MslI CAYNNNNRTG 1 cut(s) 851
MspA1I CMGCKG 4 cut(s) 391, 644, 713, 779
MspI CCGG 2 cut(s) 785, 937
Mva1269I GAATGC 3 cut(s) 1081, 1209, 1216
MwoI GCNNNNNNNGC 6 cut(s) 248, 458, 530, 596, 785, 1034
NaeI GCCGGC 1 cut(s) 786
NcoI CCATGG 1 cut(s) 998
NdeII GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
NgoMIV GCCGGC 1 cut(s) 784
NlaIII CATG 4 cut(s) 509, 579, 1002, 1037
NlaIV GGNNCC 2 cut(s) 483, 1004
NmuCI GTSAC 1 cut(s) 939
NsiI ATGCAT 1 cut(s) 835
NspI RCATGY 1 cut(s) 1037
PaeI GCATGC 1 cut(s) 1037
PceI AGGCCT 1 cut(s) 24
PctI GAATGC 3 cut(s) 1081, 1209, 1216
PdiI GCCGGC 1 cut(s) 786
PfeI GAWTC 6 cut(s) 233, 349, 394, 562, 582, 930
PleI GAGTC 1 cut(s) 817
PpsI GAGTC 1 cut(s) 817
PsiI TTATAA 1 cut(s) 990
PspN4I GGNNCC 2 cut(s) 483, 1004
PstI CTGCAG 1 cut(s) 1182
PsuI RGATCY 1 cut(s) 481
PvuII CAGCTG 4 cut(s) 391, 644, 713, 779
RseI CAYNNNNRTG 1 cut(s) 851
SaqAI TTAA 5 cut(s) 98, 132, 279, 569, 839
Sau3AI GATC 6 cut(s) 481, 742, 814, 900, 1203, 1237
SchI GAGTC 1 cut(s) 818
SfaNI GCATC 5 cut(s) 283, 344, 470, 520, 820
SfcI CTRYAG 1 cut(s) 1178
SmiMI CAYNNNNRTG 1 cut(s) 851
SmlI CTYRAG 1 cut(s) 212
SmoI CTYRAG 1 cut(s) 212
SphI GCATGC 1 cut(s) 1037
Sse9I AATT 5 cut(s) 195, 566, 605, 891, 1101
SseBI AGGCCT 1 cut(s) 24
SsiI CCGC 8 cut(s) 86, 138, 156, 162, 217, 401, 453, 522
SspMI CTAG 1 cut(s) 446
StuI AGGCCT 1 cut(s) 24
StyI CCWWGG 2 cut(s) 954, 998
TaaI ACNGT 2 cut(s) 513, 1012
TaiI ACGT 1 cut(s) 1064
TasI AATT 5 cut(s) 195, 566, 605, 891, 1101
TauI GCSGC 3 cut(s) 220, 455, 524
TfiI GAWTC 6 cut(s) 233, 349, 394, 562, 582, 930
Tru1I TTAA 5 cut(s) 98, 132, 279, 569, 839
Tru9I TTAA 5 cut(s) 98, 132, 279, 569, 839
TscAI CASTG 2 cut(s) 516, 597
TseFI GTSAC 1 cut(s) 939
TseI GCWGC 7 cut(s) 304, 644, 710, 779, 977, 1177, 1180
Tsp45I GTSAC 1 cut(s) 939
TspDTI ATGAA 3 cut(s) 618, 741, 869
TspGWI ACGGA 2 cut(s) 91, 430
TspRI CASTG 2 cut(s) 516, 597
XbaI TCTAGA 1 cut(s) 445
XceI RCATGY 1 cut(s) 1037
XspI CTAG 1 cut(s) 446
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.