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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G04560 |
| fragaria_vesca | FvH4_6g02310 |
| malus_domestica | MD04G1228300.v1.1 MD04G1228400.v1.1 MD12G1245500.v1.1 |
| prunus_persica | Prupe.6G348300_v2.0.a1 |
| pyrus_communis | pycom12g22500 |
| rosa_chinensis | RchiOBHm_Chr3g0450061 |
| rosa_laevigata | RLG00000025760 |
| rosa_multiflora | Rmu_sc0002646.1_g000024 |
| rosa_roxburghii | Rroxscaffold_6G00427840 |
| rosa_rugosa | Rorug02G0625200 |
| rosa_samantha | Rh3AG024300 Rh3BG024900 Rh3CG023800 Rh3DG024900 |
| rosa_wichuraiana | Rw3G001940 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 515 |
| AarI | CACCTGC | 1 cut(s) | 3932 |
| Acc36I | ACCTGC | 1 cut(s) | 3932 |
| AccB1I | GGYRCC | 2 cut(s) | 1477, 2915 |
| AccBSI | CCGCTC | 1 cut(s) | 1145 |
| AccI | GTMKAC | 6 cut(s) | 297, 1053, 1111, 1403, 2106, 3850 |
| AccII | CGCG | 4 cut(s) | 195, 246, 269, 3098 |
| AccIII | TCCGGA | 1 cut(s) | 687 |
| AclWI | GGATC | 9 cut(s) | 87, 273, 286, 1261, 1568, 1581, 1985, 3616, 3959 |
| AcsI | RAATTY | 5 cut(s) | 497, 691, 1324, 2316, 2972 |
| AcuI | CTGAAG | 5 cut(s) | 638, 2184, 2196, 2678, 3693 |
| AcyI | GRCGYC | 2 cut(s) | 138, 590 |
| AfaI | GTAC | 5 cut(s) | 659, 1371, 1527, 2376, 3479 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 1106, 1583, 1943, 2754, 2926 |
| AflII | CTTAAG | 1 cut(s) | 632 |
| AflIII | ACRYGT | 2 cut(s) | 1132, 3061 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 648 |
| AjnI | CCWGG | 6 cut(s) | 1802, 2066, 2230, 2340, 2569, 3191 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 458, 490 |
| AleI | CACNNNNGTG | 2 cut(s) | 2034, 3308 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 1073, 1105, 1833, 1865 |
| Alw21I | GWGCWC | 5 cut(s) | 201, 261, 1591, 2424, 3708 |
| AlwI | GGATC | 9 cut(s) | 87, 273, 286, 1261, 1568, 1581, 1985, 3616, 3959 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3947 |
| Ama87I | CYCGRG | 1 cut(s) | 33 |
| Aor13HI | TCCGGA | 1 cut(s) | 687 |
| AoxI | GGCC | 2 cut(s) | 2262, 2277 |
| ApeKI | GCWGC | 9 cut(s) | 439, 1556, 1904, 2481, 2576, 2831, 2960, 2963, 3026 |
| ApoI | RAATTY | 5 cut(s) | 497, 691, 1324, 2316, 2972 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 222, 254, 1808, 1840, 2519, 2551 |
| AseI | ATTAAT | 1 cut(s) | 3044 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 651, 2394, 2747 |
| AspLEI | GCGC | 2 cut(s) | 271, 573 |
| AspS9I | GGNCC | 4 cut(s) | 328, 1951, 2262, 2992 |
| AsuC2I | CCSGG | 3 cut(s) | 34, 35, 129 |
| AsuHPI | GGTGA | 5 cut(s) | 377, 3209, 3235, 3275, 3395 |
| AsuII | TTCGAA | 1 cut(s) | 287 |
| AvaI | CYCGRG | 1 cut(s) | 33 |
| AvaII | GGWCC | 3 cut(s) | 328, 1951, 2992 |
| BaeGI | GKGCMC | 2 cut(s) | 1482, 2920 |
| BamHI | GGATCC | 2 cut(s) | 278, 1573 |
| BanI | GGYRCC | 2 cut(s) | 1477, 2915 |
| BanII | GRGCYC | 5 cut(s) | 201, 261, 1591, 2878, 3708 |
| BbsI | GAAGAC | 2 cut(s) | 644, 3782 |
| Bbv12I | GWGCWC | 5 cut(s) | 201, 261, 1591, 2424, 3708 |
| BbvCI | CCTCAGC | 2 cut(s) | 774, 2765 |
| BbvI | GCAGC | 9 cut(s) | 451, 1543, 1891, 2468, 2588, 2818, 2950, 2972, 3013 |
| BccI | CCATC | 3 cut(s) | 1564, 3655, 3757 |
| BceAI | ACGGC | 3 cut(s) | 50, 158, 238 |
| BciT130I | CCWGG | 6 cut(s) | 1804, 2068, 2232, 2342, 2571, 3193 |
| BclI | TGATCA | 1 cut(s) | 3070 |
| BcnI | CCSGG | 3 cut(s) | 34, 35, 129 |
| BfmI | CTRYAG | 1 cut(s) | 2103 |
| BfoI | RGCGCY | 1 cut(s) | 574 |
| BfrI | CTTAAG | 1 cut(s) | 632 |
| BfuAI | ACCTGC | 1 cut(s) | 3932 |
| BglII | AGATCT | 5 cut(s) | 1153, 2199, 2885, 3181, 3734 |
| Bme1390I | CCNGG | 9 cut(s) | 34, 35, 129, 1804, 2068, 2232, 2342, 2571, 3193 |
| Bme18I | GGWCC | 3 cut(s) | 328, 1951, 2992 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 648 |
| BmeT110I | CYCGRG | 1 cut(s) | 33 |
| BmgT120I | GGNCC | 4 cut(s) | 328, 1951, 2262, 2992 |
| BmrFI | CCNGG | 9 cut(s) | 34, 35, 129, 1804, 2068, 2232, 2342, 2571, 3193 |
| BmrI | ACTGGG | 3 cut(s) | 142, 1592, 3412 |
| BmuI | ACTGGG | 3 cut(s) | 142, 1592, 3412 |
| BoxI | GACNNNNGTC | 1 cut(s) | 3674 |
| BpiI | GAAGAC | 2 cut(s) | 644, 3782 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1466, 1498, 1938, 1970 |
| BpmI | CTGGAG | 6 cut(s) | 44, 245, 275, 1083, 2258, 2363 |
| Bpu10I | CCTNAGC | 3 cut(s) | 774, 2765, 3000 |
| Bpu14I | TTCGAA | 1 cut(s) | 287 |
| BpuEI | CTTGAG | 6 cut(s) | 523, 998, 1440, 2686, 3034, 3291 |
| BpuMI | CCSGG | 3 cut(s) | 34, 35, 129 |
| Bsa29I | ATCGAT | 2 cut(s) | 818, 1412 |
| BsaAI | YACGTR | 1 cut(s) | 3287 |
| BsaBI | GATNNNNATC | 1 cut(s) | 74 |
| BsaHI | GRCGYC | 2 cut(s) | 138, 590 |
| BsaI | GGTCTC | 2 cut(s) | 499, 1802 |
| BsaJI | CCNNGG | 8 cut(s) | 33, 244, 1803, 2067, 2280, 2385, 2620, 3192 |
| BsaWI | WCCGGW | 3 cut(s) | 330, 687, 845 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 1106, 1583, 1943, 2754, 2926 |
| Bse3DI | GCAATG | 5 cut(s) | 358, 627, 1497, 2160, 3480 |
| Bse8I | GATNNNNATC | 1 cut(s) | 74 |
| BseAI | TCCGGA | 1 cut(s) | 687 |
| BseBI | CCWGG | 6 cut(s) | 1804, 2068, 2232, 2342, 2571, 3193 |
| BseCI | ATCGAT | 2 cut(s) | 818, 1412 |
| BseDI | CCNNGG | 8 cut(s) | 33, 244, 1803, 2067, 2280, 2385, 2620, 3192 |
| BseJI | GATNNNNATC | 1 cut(s) | 74 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 1106, 1583, 1943, 2754, 2926 |
| BseMI | GCAATG | 5 cut(s) | 358, 627, 1497, 2160, 3480 |
| BseMII | CTCAG | 8 cut(s) | 765, 1464, 2132, 2135, 2510, 2756, 2991, 3246 |
| BseRI | GAGGAG | 2 cut(s) | 1094, 1370 |
| BseSI | GKGCMC | 2 cut(s) | 1482, 2920 |
| BseXI | GCAGC | 9 cut(s) | 451, 1543, 1891, 2468, 2588, 2818, 2950, 2972, 3013 |
| BseYI | CCCAGC | 3 cut(s) | 2498, 3485, 3947 |
| BsgI | GTGCAG | 3 cut(s) | 458, 995, 2595 |
| Bsh1236I | CGCG | 4 cut(s) | 195, 246, 269, 3098 |
| BshFI | GGCC | 2 cut(s) | 2264, 2279 |
| BshNI | GGYRCC | 2 cut(s) | 1477, 2915 |
| BshVI | ATCGAT | 2 cut(s) | 818, 1412 |
| BsiHKAI | GWGCWC | 5 cut(s) | 201, 261, 1591, 2424, 3708 |
| BsiHKCI | CYCGRG | 1 cut(s) | 33 |
| BsiSI | CCGG | 6 cut(s) | 34, 129, 331, 412, 688, 846 |
| BslFI | GGGAC | 1 cut(s) | 877 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 1106, 1583, 1943, 2754, 2926 |
| BsmBI | CGTCTC | 2 cut(s) | 129, 597 |
| BsmFI | GGGAC | 1 cut(s) | 877 |
| BsmI | GAATGC | 2 cut(s) | 2386, 2671 |
| BsnI | GGCC | 2 cut(s) | 2264, 2279 |
| Bso31I | GGTCTC | 2 cut(s) | 499, 1802 |
| BsoBI | CYCGRG | 1 cut(s) | 33 |
| Bsp119I | TTCGAA | 1 cut(s) | 287 |
| Bsp1286I | GDGCHC | 8 cut(s) | 201, 261, 1482, 1591, 2424, 2878, 2920, 3708 |
| Bsp13I | TCCGGA | 1 cut(s) | 687 |
| Bsp1407I | TGTACA | 1 cut(s) | 3477 |
| Bsp19I | CCATGG | 1 cut(s) | 2385 |
| Bsp68I | TCGCGA | 2 cut(s) | 195, 3098 |
| BspANI | GGCC | 2 cut(s) | 2264, 2279 |
| BspCNI | CTCAG | 8 cut(s) | 766, 1465, 2133, 2134, 2511, 2757, 2992, 3245 |
| BspDI | ATCGAT | 2 cut(s) | 818, 1412 |
| BspEI | TCCGGA | 1 cut(s) | 687 |
| BspFNI | CGCG | 4 cut(s) | 195, 246, 269, 3098 |
| BspMI | ACCTGC | 1 cut(s) | 3932 |
| BspPI | GGATC | 9 cut(s) | 87, 273, 286, 1261, 1568, 1581, 1985, 3616, 3959 |
| BspQI | GCTCTTC | 2 cut(s) | 341, 2883 |
| BspT104I | TTCGAA | 1 cut(s) | 287 |
| BspT107I | GGYRCC | 2 cut(s) | 1477, 2915 |
| BspTI | CTTAAG | 1 cut(s) | 632 |
| BspTNI | GGTCTC | 2 cut(s) | 499, 1802 |
| BsrBI | CCGCTC | 1 cut(s) | 1145 |
| BsrDI | GCAATG | 5 cut(s) | 358, 627, 1497, 2160, 3480 |
| BsrGI | TGTACA | 1 cut(s) | 3477 |
| BssECI | CCNNGG | 8 cut(s) | 33, 244, 1803, 2067, 2280, 2385, 2620, 3192 |
| BssNAI | GTATAC | 1 cut(s) | 1404 |
| BssNI | GRCGYC | 2 cut(s) | 138, 590 |
| BssT1I | CCWWGG | 3 cut(s) | 2280, 2385, 2620 |
| Bst1107I | GTATAC | 1 cut(s) | 1404 |
| Bst2UI | CCWGG | 6 cut(s) | 1804, 2068, 2232, 2342, 2571, 3193 |
| Bst6I | CTCTTC | 4 cut(s) | 127, 341, 2272, 2883 |
| BstACI | GRCGYC | 2 cut(s) | 138, 590 |
| BstAFI | CTTAAG | 1 cut(s) | 632 |
| BstAUI | TGTACA | 1 cut(s) | 3477 |
| BstBAI | YACGTR | 1 cut(s) | 3287 |
| BstBI | TTCGAA | 1 cut(s) | 287 |
| BstC8I | GCNNGC | 8 cut(s) | 197, 251, 1602, 1790, 1975, 3784, 3799, 3822 |
| BstDSI | CCRYGG | 2 cut(s) | 244, 2385 |
| BstEII | GGTNACC | 1 cut(s) | 909 |
| BstFNI | CGCG | 4 cut(s) | 195, 246, 269, 3098 |
| BstH2I | RGCGCY | 1 cut(s) | 574 |
| BstHHI | GCGC | 2 cut(s) | 271, 573 |
| BstNI | CCWGG | 6 cut(s) | 1804, 2068, 2232, 2342, 2571, 3193 |
| BstNSI | RCATGY | 5 cut(s) | 1136, 1775, 2090, 3065, 3824 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 3674 |
| BstPI | GGTNACC | 1 cut(s) | 909 |
| BstSCI | CCNGG | 9 cut(s) | 32, 33, 127, 1802, 2066, 2230, 2340, 2569, 3191 |
| BstSFI | CTRYAG | 1 cut(s) | 2103 |
| BstSLI | GKGCMC | 2 cut(s) | 1482, 2920 |
| BstSNI | TACGTA | 1 cut(s) | 3287 |
| BstUI | CGCG | 4 cut(s) | 195, 246, 269, 3098 |
| BstV1I | GCAGC | 9 cut(s) | 451, 1543, 1891, 2468, 2588, 2818, 2950, 2972, 3013 |
| BstV2I | GAAGAC | 2 cut(s) | 644, 3782 |
| BstX2I | RGATCY | 9 cut(s) | 278, 1153, 1253, 1573, 2199, 2885, 3181, 3608, 3734 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1380, 3634 |
| BstYI | RGATCY | 9 cut(s) | 278, 1153, 1253, 1573, 2199, 2885, 3181, 3608, 3734 |
| BstZ17I | GTATAC | 1 cut(s) | 1404 |
| Bsu15I | ATCGAT | 2 cut(s) | 818, 1412 |
| BsuRI | GGCC | 2 cut(s) | 2264, 2279 |
| BsuTUI | ATCGAT | 2 cut(s) | 818, 1412 |
| BtgI | CCRYGG | 2 cut(s) | 244, 2385 |
| BtgZI | GCGATG | 2 cut(s) | 432, 2884 |
| BtsI | GCAGTG | 1 cut(s) | 1536 |
| BtsIMutI | CAGTG | 7 cut(s) | 155, 738, 1536, 1863, 2100, 2252, 2729 |
| BtuMI | TCGCGA | 2 cut(s) | 195, 3098 |
| BveI | ACCTGC | 1 cut(s) | 3932 |
| Cac8I | GCNNGC | 8 cut(s) | 197, 251, 1602, 1790, 1975, 3784, 3799, 3822 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3947 |
| CfoI | GCGC | 2 cut(s) | 271, 573 |
| Cfr13I | GGNCC | 4 cut(s) | 328, 1951, 2262, 2992 |
| Cfr42I | CCGCGG | 1 cut(s) | 247 |
| Cfr9I | CCCGGG | 1 cut(s) | 33 |
| ClaI | ATCGAT | 2 cut(s) | 818, 1412 |
| CseI | GACGC | 3 cut(s) | 146, 579, 2168 |
| CsiI | ACCWGGT | 1 cut(s) | 2569 |
| Csp6I | GTAC | 5 cut(s) | 658, 1370, 1526, 2375, 3478 |
| CviQI | GTAC | 5 cut(s) | 658, 1370, 1526, 2375, 3478 |
| DraI | TTTAAA | 1 cut(s) | 1323 |
| DriI | GACNNNNNGTC | 1 cut(s) | 648 |
| Eam1104I | CTCTTC | 4 cut(s) | 127, 341, 2272, 2883 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 648 |
| EarI | CTCTTC | 4 cut(s) | 127, 341, 2272, 2883 |
| EciI | GGCGGA | 1 cut(s) | 85 |
| Ecl136II | GAGCTC | 4 cut(s) | 199, 259, 1589, 3706 |
| Eco105I | TACGTA | 1 cut(s) | 3287 |
| Eco130I | CCWWGG | 3 cut(s) | 2280, 2385, 2620 |
| Eco147I | AGGCCT | 1 cut(s) | 2279 |
| Eco24I | GRGCYC | 5 cut(s) | 201, 261, 1591, 2878, 3708 |
| Eco31I | GGTCTC | 2 cut(s) | 499, 1802 |
| Eco32I | GATATC | 2 cut(s) | 2776, 3424 |
| Eco47I | GGWCC | 3 cut(s) | 328, 1951, 2992 |
| Eco53kI | GAGCTC | 4 cut(s) | 199, 259, 1589, 3706 |
| Eco57I | CTGAAG | 5 cut(s) | 638, 2184, 2196, 2678, 3693 |
| Eco88I | CYCGRG | 1 cut(s) | 33 |
| Eco91I | GGTNACC | 1 cut(s) | 909 |
| EcoICRI | GAGCTC | 4 cut(s) | 199, 259, 1589, 3706 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2262 |
| EcoO65I | GGTNACC | 1 cut(s) | 909 |
| EcoRI | GAATTC | 1 cut(s) | 497 |
| EcoRII | CCWGG | 6 cut(s) | 1802, 2066, 2230, 2340, 2569, 3191 |
| EcoRV | GATATC | 2 cut(s) | 2776, 3424 |
| EcoT14I | CCWWGG | 3 cut(s) | 2280, 2385, 2620 |
| EcoT22I | ATGCAT | 3 cut(s) | 727, 1895, 3776 |
| EcoT38I | GRGCYC | 5 cut(s) | 201, 261, 1591, 2878, 3708 |
| ErhI | CCWWGG | 3 cut(s) | 2280, 2385, 2620 |
| Esp3I | CGTCTC | 2 cut(s) | 129, 597 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 2251, 2283, 2862, 2894, 3171, 3203, 3322, 3354 |
| FaqI | GGGAC | 1 cut(s) | 877 |
| FauI | CCCGC | 1 cut(s) | 178 |
| FauNDI | CATATG | 2 cut(s) | 2416, 3543 |
| FbaI | TGATCA | 1 cut(s) | 3070 |
| FblI | GTMKAC | 6 cut(s) | 297, 1053, 1111, 1403, 2106, 3850 |
| FriOI | GRGCYC | 5 cut(s) | 201, 261, 1591, 2878, 3708 |
| GlaI | GCGC | 2 cut(s) | 270, 572 |
| GsaI | CCCAGC | 3 cut(s) | 2502, 3489, 3951 |
| GsuI | CTGGAG | 6 cut(s) | 44, 245, 275, 1083, 2258, 2363 |
| HaeII | RGCGCY | 1 cut(s) | 574 |
| HaeIII | GGCC | 2 cut(s) | 2264, 2279 |
| HapII | CCGG | 6 cut(s) | 34, 129, 331, 412, 688, 846 |
| HgaI | GACGC | 3 cut(s) | 146, 579, 2168 |
| HhaI | GCGC | 2 cut(s) | 271, 573 |
| Hin1I | GRCGYC | 2 cut(s) | 138, 590 |
| Hin6I | GCGC | 2 cut(s) | 269, 571 |
| HinP1I | GCGC | 2 cut(s) | 269, 571 |
| HincII | GTYRAC | 4 cut(s) | 298, 642, 1420, 3928 |
| HindII | GTYRAC | 4 cut(s) | 298, 642, 1420, 3928 |
| HpaI | GTTAAC | 1 cut(s) | 3928 |
| HpaII | CCGG | 6 cut(s) | 34, 129, 331, 412, 688, 846 |
| HphI | GGTGA | 5 cut(s) | 377, 3209, 3235, 3275, 3395 |
| Hpy99I | CGWCG | 5 cut(s) | 179, 182, 215, 224, 299 |
| HpyCH4IV | ACGT | 3 cut(s) | 660, 2046, 3286 |
| HpySE526I | ACGT | 3 cut(s) | 660, 2046, 3286 |
| Hsp92I | GRCGYC | 2 cut(s) | 138, 590 |
| HspAI | GCGC | 2 cut(s) | 269, 571 |
| Kpn2I | TCCGGA | 1 cut(s) | 687 |
| Ksp22I | TGATCA | 1 cut(s) | 3070 |
| KspAI | GTTAAC | 1 cut(s) | 3928 |
| KspI | CCGCGG | 1 cut(s) | 247 |
| LguI | GCTCTTC | 2 cut(s) | 341, 2883 |
| Lsp1109I | GCAGC | 9 cut(s) | 451, 1543, 1891, 2468, 2588, 2818, 2950, 2972, 3013 |
| MabI | ACCWGGT | 1 cut(s) | 2569 |
| MaeII | ACGT | 3 cut(s) | 660, 2046, 3286 |
| MaeIII | GTNAC | 7 cut(s) | 909, 1485, 2565, 2837, 3064, 3263, 3695 |
| MbiI | CCGCTC | 1 cut(s) | 1145 |
| MfeI | CAATTG | 1 cut(s) | 852 |
| MflI | RGATCY | 9 cut(s) | 278, 1153, 1253, 1573, 2199, 2885, 3181, 3608, 3734 |
| MhlI | GDGCHC | 8 cut(s) | 201, 261, 1482, 1591, 2424, 2878, 2920, 3708 |
| MlyI | GAGTC | 6 cut(s) | 107, 113, 389, 1447, 3224, 3856 |
| MmeI | TCCRAC | 1 cut(s) | 141 |
| Mph1103I | ATGCAT | 3 cut(s) | 727, 1895, 3776 |
| MroI | TCCGGA | 1 cut(s) | 687 |
| MroXI | GAANNNNTTC | 3 cut(s) | 651, 2394, 2747 |
| MslI | CAYNNNNRTG | 4 cut(s) | 1752, 1898, 2034, 3308 |
| MspA1I | CMGCKG | 3 cut(s) | 246, 2963, 3206 |
| MspCI | CTTAAG | 1 cut(s) | 632 |
| MspI | CCGG | 6 cut(s) | 34, 129, 331, 412, 688, 846 |
| MspR9I | CCNGG | 9 cut(s) | 34, 35, 129, 1804, 2068, 2232, 2342, 2571, 3193 |
| MunI | CAATTG | 1 cut(s) | 852 |
| Mva1269I | GAATGC | 2 cut(s) | 2386, 2671 |
| MvaI | CCWGG | 6 cut(s) | 1804, 2068, 2232, 2342, 2571, 3193 |
| MvnI | CGCG | 4 cut(s) | 195, 246, 269, 3098 |
| NciI | CCSGG | 3 cut(s) | 34, 35, 129 |
| NcoI | CCATGG | 1 cut(s) | 2385 |
| NdeI | CATATG | 2 cut(s) | 2416, 3543 |
| NmeAIII | GCCGAG | 1 cut(s) | 1949 |
| NmuCI | GTSAC | 2 cut(s) | 2837, 3263 |
| NruI | TCGCGA | 2 cut(s) | 195, 3098 |
| NsiI | ATGCAT | 3 cut(s) | 727, 1895, 3776 |
| NspI | RCATGY | 5 cut(s) | 1136, 1775, 2090, 3065, 3824 |
| NspV | TTCGAA | 1 cut(s) | 287 |
| OliI | CACNNNNGTG | 2 cut(s) | 2034, 3308 |
| PaeI | GCATGC | 1 cut(s) | 3824 |
| PaqCI | CACCTGC | 1 cut(s) | 3932 |
| PceI | AGGCCT | 1 cut(s) | 2279 |
| PciI | ACATGT | 2 cut(s) | 1132, 3061 |
| PciSI | GCTCTTC | 2 cut(s) | 341, 2883 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 216, 279 |
| PctI | GAATGC | 2 cut(s) | 2386, 2671 |
| PdmI | GAANNNNTTC | 3 cut(s) | 651, 2394, 2747 |
| PfeI | GAWTC | 8 cut(s) | 284, 1269, 1295, 1547, 1711, 2637, 2735, 3569 |
| PleI | GAGTC | 6 cut(s) | 107, 113, 388, 1447, 3224, 3855 |
| PpsI | GAGTC | 6 cut(s) | 107, 113, 388, 1447, 3224, 3855 |
| Ppu21I | YACGTR | 1 cut(s) | 3287 |
| PscI | ACATGT | 2 cut(s) | 1132, 3061 |
| PshAI | GACNNNNGTC | 1 cut(s) | 3674 |
| PshBI | ATTAAT | 1 cut(s) | 3044 |
| PsiI | TTATAA | 1 cut(s) | 515 |
| Psp124BI | GAGCTC | 4 cut(s) | 201, 261, 1591, 3708 |
| Psp6I | CCWGG | 6 cut(s) | 1802, 2066, 2230, 2340, 2569, 3191 |
| PspEI | GGTNACC | 1 cut(s) | 909 |
| PspFI | CCCAGC | 3 cut(s) | 2498, 3485, 3947 |
| PspGI | CCWGG | 6 cut(s) | 1802, 2066, 2230, 2340, 2569, 3191 |
| PspPI | GGNCC | 4 cut(s) | 328, 1951, 2262, 2992 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3519, 3551 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3947 |
| PsuI | RGATCY | 9 cut(s) | 278, 1153, 1253, 1573, 2199, 2885, 3181, 3608, 3734 |
| PvuII | CAGCTG | 1 cut(s) | 2963 |
| RruI | TCGCGA | 2 cut(s) | 195, 3098 |
| RsaI | GTAC | 5 cut(s) | 659, 1371, 1527, 2376, 3479 |
| RsaNI | GTAC | 5 cut(s) | 658, 1370, 1526, 2375, 3478 |
| RseI | CAYNNNNRTG | 4 cut(s) | 1752, 1898, 2034, 3308 |
| SacI | GAGCTC | 4 cut(s) | 201, 261, 1591, 3708 |
| SacII | CCGCGG | 1 cut(s) | 247 |
| SalI | GTCGAC | 1 cut(s) | 296 |
| SapI | GCTCTTC | 2 cut(s) | 341, 2883 |
| Sau96I | GGNCC | 4 cut(s) | 328, 1951, 2262, 2992 |
| SchI | GAGTC | 6 cut(s) | 107, 113, 389, 1447, 3224, 3856 |
| ScrFI | CCNGG | 9 cut(s) | 34, 35, 129, 1804, 2068, 2232, 2342, 2571, 3193 |
| SduI | GDGCHC | 8 cut(s) | 201, 261, 1482, 1591, 2424, 2878, 2920, 3708 |
| SexAI | ACCWGGT | 1 cut(s) | 2569 |
| SfcI | CTRYAG | 1 cut(s) | 2103 |
| Sfr303I | CCGCGG | 1 cut(s) | 247 |
| SfuI | TTCGAA | 1 cut(s) | 287 |
| SgrBI | CCGCGG | 1 cut(s) | 247 |
| SinI | GGWCC | 3 cut(s) | 328, 1951, 2992 |
| SmaI | CCCGGG | 1 cut(s) | 35 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 1752, 1898, 2034, 3308 |
| SmlI | CTYRAG | 7 cut(s) | 502, 632, 977, 1455, 2701, 3049, 3306 |
| SmoI | CTYRAG | 7 cut(s) | 502, 632, 977, 1455, 2701, 3049, 3306 |
| SnaBI | TACGTA | 1 cut(s) | 3287 |
| SphI | GCATGC | 1 cut(s) | 3824 |
| SseBI | AGGCCT | 1 cut(s) | 2279 |
| SspI | AATATT | 1 cut(s) | 2710 |
| SstI | GAGCTC | 4 cut(s) | 201, 261, 1591, 3708 |
| StuI | AGGCCT | 1 cut(s) | 2279 |
| StyD4I | CCNGG | 9 cut(s) | 32, 33, 127, 1802, 2066, 2230, 2340, 2569, 3191 |
| StyI | CCWWGG | 3 cut(s) | 2280, 2385, 2620 |
| TaiI | ACGT | 3 cut(s) | 663, 2049, 3289 |
| TatI | WGTACW | 2 cut(s) | 2374, 3477 |
| TauI | GCSGC | 5 cut(s) | 207, 249, 1148, 2758, 3206 |
| TfiI | GAWTC | 8 cut(s) | 284, 1269, 1295, 1547, 1711, 2637, 2735, 3569 |
| TscAI | CASTG | 7 cut(s) | 155, 738, 1543, 1870, 2107, 2252, 2736 |
| TseFI | GTSAC | 2 cut(s) | 2837, 3263 |
| TseI | GCWGC | 9 cut(s) | 439, 1556, 1904, 2481, 2576, 2831, 2960, 2963, 3026 |
| Tsp45I | GTSAC | 2 cut(s) | 2837, 3263 |
| TspGWI | ACGGA | 1 cut(s) | 2928 |
| TspMI | CCCGGG | 1 cut(s) | 33 |
| TspRI | CASTG | 7 cut(s) | 155, 738, 1543, 1870, 2107, 2252, 2736 |
| Vha464I | CTTAAG | 1 cut(s) | 632 |
| VpaK11BI | GGWCC | 3 cut(s) | 328, 1951, 2992 |
| VspI | ATTAAT | 1 cut(s) | 3044 |
| XapI | RAATTY | 5 cut(s) | 497, 691, 1324, 2316, 2972 |
| XbaI | TCTAGA | 1 cut(s) | 1543 |
| XceI | RCATGY | 5 cut(s) | 1136, 1775, 2090, 3065, 3824 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 902, 3689 |
| XmaI | CCCGGG | 1 cut(s) | 33 |
| XmiI | GTMKAC | 6 cut(s) | 297, 1053, 1111, 1403, 2106, 3850 |
| XmnI | GAANNNNTTC | 3 cut(s) | 651, 2394, 2747 |
| Zsp2I | ATGCAT | 3 cut(s) | 727, 1895, 3776 |