Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013926

Physical Location & Seq

Genomic Coordinates Reverse (-)

1517409 .. 1518599

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05327.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGAAACTTCTAGAAACTCCACCAACTCATCACTCTTCCAATGGTTAGGTCTTCTAGAAGATTCTGATCAGCCTCCTGATTCTACCCCTCCTCGAGTCATAACCCTTCTCGCTTCTACCCTCGAGAAGATGATTCAGAAGAACAAAAAAAAATTCCACACAAGACACAACAAGGCTGATGAGATCACTATGTTCCATGGCTCAAAAGCACCATCGTTAAGCATTTATCGTTACACAGAAAGAATCCATAGGTATGCTCAGTGTAGCCCTGTGTGTTTCGTTGCAGCTTTTGCCTACATCCTTAGATATCTACAGAGACCAGAGGCTACCAGTACGGCTCGTCGTCTCACATCACTCAACGTTCATCGCCTTCTCATCACCAGTCTCTTGGTCGCAGCAAAATTCTTGGAACGCCAGTGTTATAACAACGCATATTATGCAAAAATCGGAGGAGTGAGCACTGAAGAGATGAATAGGCTGGAGAGAACGTTCTTGGTTGATGTTGATTTCAGGCTATATATTACAACGGAGACTTTCGAGAAACACTGTCTCATGTTGCAGAAAGAAACGGTGCCTTGTGATTCAAGAAAACTTAGAACAGTTCTTGGAGAGATAGCTTGTAGCTGCCAAGCGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

212

Amino Acids

24.42

Weight (kDa)

9.18

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin	PF08613	37 - 172	5.8e-35	Cyclin
Cyclin_N	PF00134	77 - 172	4.4e-10	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05327
fragaria_vesca	FvH4_6g05780
prunus_persica	Prupe.6G326500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454701
rosa_laevigata	RLG00000025423
rosa_multiflora	Rmu_sc0001792.1_g000026 Rmu_sc0003140.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424850
rosa_rugosa	Rorug03G0001300.1 Rorug03G0001400 Rorug03G0001500 Rorug03G0001600
rosa_samantha	Rh3AG061200 Rh3BG063000 Rh3CG061900 Rh3DG062800
rosa_wichuraiana	Rw3G004780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	423
AccB1I	GGYRCC	1 cut(s)	571
AclI	AACGTT	2 cut(s)	360, 488
AcsI	RAATTY	2 cut(s)	152, 401
AcuI	CTGAAG	1 cut(s)	483
AfaI	GTAC	1 cut(s)	334
AgsI	TTSAA	1 cut(s)	585
AloI	GAACNNNNNNTCC	2 cut(s)	473, 505
AluBI	AGCT	3 cut(s)	287, 617, 624
AluI	AGCT	3 cut(s)	287, 617, 624
Alw21I	GWGCWC	1 cut(s)	461
Alw26I	GTCTC	5 cut(s)	310, 350, 389, 524, 554
Ama87I	CYCGRG	2 cut(s)	93, 122
ApeKI	GCWGC	3 cut(s)	284, 395, 624
ApoI	RAATTY	2 cut(s)	152, 401
AsuHPI	GGTGA	1 cut(s)	370
AvaI	CYCGRG	2 cut(s)	93, 122
BanI	GGYRCC	1 cut(s)	571
BbsI	GAAGAC	1 cut(s)	44
Bbv12I	GWGCWC	1 cut(s)	461
BbvI	GCAGC	3 cut(s)	296, 407, 611
BccI	CCATC	1 cut(s)	220
BceAI	ACGGC	1 cut(s)	351
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	5 cut(s)	310, 350, 389, 524, 554
BfaI	CTAG	2 cut(s)	12, 56
BfmI	CTRYAG	1 cut(s)	311
BisI	GCNGC	3 cut(s)	285, 396, 625
BlsI	GCNGC	3 cut(s)	286, 397, 626
BmeT110I	CYCGRG	2 cut(s)	93, 122
BmiI	GGNNCC	1 cut(s)	573
BpiI	GAAGAC	1 cut(s)	44
BpmI	CTGGAG	1 cut(s)	500
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	473, 503
Bse1I	ACTGG	3 cut(s)	330, 381, 415
Bse8I	GATNNNNATC	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	297
BseJI	GATNNNNATC	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	272
BseNI	ACTGG	3 cut(s)	330, 381, 415
BseRI	GAGGAG	2 cut(s)	81, 465
BseXI	GCAGC	3 cut(s)	296, 407, 611
BshNI	GGYRCC	1 cut(s)	571
BsiHKAI	GWGCWC	1 cut(s)	461
BsiHKCI	CYCGRG	2 cut(s)	93, 122
BsmAI	GTCTC	5 cut(s)	310, 350, 389, 524, 554
BsmBI	CGTCTC	1 cut(s)	350
Bso31I	GGTCTC	1 cut(s)	310
BsoBI	CYCGRG	2 cut(s)	93, 122
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	2 cut(s)	67, 183
Bsp19I	CCATGG	1 cut(s)	196
BspCNI	CTCAG	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	310
BsrI	ACTGG	3 cut(s)	330, 381, 415
BssECI	CCNNGG	1 cut(s)	196
BssMI	GATC	2 cut(s)	67, 183
BssT1I	CCWWGG	1 cut(s)	196
Bst4CI	ACNGT	3 cut(s)	548, 571, 601
Bst6I	CTCTTC	2 cut(s)	41, 459
BstAPI	GCANNNNNTGC	2 cut(s)	290, 437
BstDEI	CTNAG	3 cut(s)	258, 302, 593
BstDSI	CCRYGG	1 cut(s)	196
BstF5I	GGATG	1 cut(s)	297
BstKTI	GATC	2 cut(s)	70, 186
BstMAI	GTCTC	5 cut(s)	310, 350, 389, 524, 554
BstMBI	GATC	2 cut(s)	67, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 437
BstSFI	CTRYAG	1 cut(s)	311
BstV1I	GCAGC	3 cut(s)	296, 407, 611
BstV2I	GAAGAC	1 cut(s)	44
BstXI	CCANNNNNNTGG	1 cut(s)	388
BtgI	CCRYGG	1 cut(s)	196
BtgZI	GCGATG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	297
BtsIMutI	CAGTG	4 cut(s)	266, 422, 459, 544
Csp6I	GTAC	1 cut(s)	333
CviAII	CATG	2 cut(s)	197, 553
CviQI	GTAC	1 cut(s)	333
DdeI	CTNAG	3 cut(s)	258, 302, 593
DpnI	GATC	2 cut(s)	69, 185
DpnII	GATC	2 cut(s)	67, 183
Eam1104I	CTCTTC	2 cut(s)	41, 459
EarI	CTCTTC	2 cut(s)	41, 459
Eco130I	CCWWGG	1 cut(s)	196
Eco31I	GGTCTC	1 cut(s)	310
Eco32I	GATATC	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	483
Eco88I	CYCGRG	2 cut(s)	93, 122
EcoRV	GATATC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	196
Esp3I	CGTCTC	1 cut(s)	350
FaeI	CATG	2 cut(s)	200, 556
FatI	CATG	2 cut(s)	196, 552
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	3 cut(s)	285, 396, 625
FokI	GGATG	1 cut(s)	284
Fsp4HI	GCNGC	3 cut(s)	285, 396, 625
FspBI	CTAG	2 cut(s)	12, 56
GluI	GCNGC	3 cut(s)	285, 396, 625
GsuI	CTGGAG	1 cut(s)	500
Hin1II	CATG	2 cut(s)	200, 556
HinfI	GANTC	6 cut(s)	62, 80, 96, 133, 243, 581
HphI	GGTGA	1 cut(s)	370
Hpy188I	TCNGA	3 cut(s)	67, 138, 449
Hpy188III	TCNNGA	6 cut(s)	12, 56, 77, 124, 538, 585
Hpy99I	CGWCG	1 cut(s)	345
HpyAV	CCTTC	2 cut(s)	116, 380
HpyCH4III	ACNGT	3 cut(s)	548, 571, 601
HpyCH4IV	ACGT	2 cut(s)	360, 488
HpyCH4V	TGCA	3 cut(s)	284, 440, 559
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 437
HpyF3I	CTNAG	3 cut(s)	258, 302, 593
HpySE526I	ACGT	2 cut(s)	360, 488
Hsp92II	CATG	2 cut(s)	200, 556
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	67, 183
LpnPI	CCDG	8 cut(s)	90, 282, 333, 343, 394, 428, 464, 496
Lsp1109I	GCAGC	3 cut(s)	296, 407, 611
MaeI	CTAG	2 cut(s)	12, 56
MaeII	ACGT	2 cut(s)	360, 488
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	69, 185
MboI	GATC	2 cut(s)	67, 183
MboII	GAAGA	6 cut(s)	28, 44, 71, 139, 151, 476
MhlI	GDGCHC	1 cut(s)	461
MluCI	AATT	2 cut(s)	152, 401
MlyI	GAGTC	1 cut(s)	105
MnlI	CCTC	6 cut(s)	84, 99, 102, 131, 316, 443
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	252
MwoI	GCNNNNNNNGC	2 cut(s)	290, 437
NcoI	CCATGG	1 cut(s)	196
NdeII	GATC	2 cut(s)	67, 183
NlaIII	CATG	2 cut(s)	200, 556
NlaIV	GGNNCC	1 cut(s)	573
PaeR7I	CTCGAG	2 cut(s)	93, 122
PfeI	GAWTC	5 cut(s)	62, 80, 133, 243, 581
PkrI	GCNGC	3 cut(s)	286, 397, 626
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PsiI	TTATAA	1 cut(s)	423
Psp1406I	AACGTT	2 cut(s)	360, 488
PspN4I	GGNNCC	1 cut(s)	573
PspXI	VCTCGAGB	1 cut(s)	93
RsaI	GTAC	1 cut(s)	334
RsaNI	GTAC	1 cut(s)	333
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	3 cut(s)	285, 396, 625
Sau3AI	GATC	2 cut(s)	67, 183
SchI	GAGTC	1 cut(s)	105
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	7 cut(s)	52, 254, 289, 363, 491, 619, 626
SfcI	CTRYAG	1 cut(s)	311
Sfr274I	CTCGAG	2 cut(s)	93, 122
SlaI	CTCGAG	2 cut(s)	93, 122
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	2 cut(s)	93, 122
SmoI	CTYRAG	2 cut(s)	93, 122
Sse9I	AATT	2 cut(s)	152, 401
SspMI	CTAG	2 cut(s)	12, 56
StyI	CCWWGG	1 cut(s)	196
TaaI	ACNGT	3 cut(s)	548, 571, 601
TaiI	ACGT	2 cut(s)	363, 491
TaqI	TCGA	3 cut(s)	94, 123, 537
TasI	AATT	2 cut(s)	152, 401
TfiI	GAWTC	5 cut(s)	62, 80, 133, 243, 581
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	4 cut(s)	266, 422, 466, 551
TseI	GCWGC	3 cut(s)	284, 395, 624
TspDTI	ATGAA	2 cut(s)	353, 485
TspGWI	ACGGA	1 cut(s)	542
TspRI	CASTG	4 cut(s)	266, 422, 466, 551
XapI	RAATTY	2 cut(s)	152, 401
XbaI	TCTAGA	2 cut(s)	11, 55
XhoI	CTCGAG	2 cut(s)	93, 122
XspI	CTAG	2 cut(s)	12, 56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.