Rmu_sc0003140.1_g000003

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003140.1
OG0013926
Physical Location & Seq
Reverse (-)
6192 .. 6863
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003140.1_g000003.1.cds

Sequence Viewer

Length: 426 bp
atgaaggacgtcattacaatgttccatgcctcagaagttcctgccttaagcattagaaagtatattgagcgcatcttcaagtactcaagctgcagcaactcttgctttgttgttgcatacatatacatcgaaagatttctacaacgtactgggacttgtctcacttctctcaacgttcaccggcttttaatcaccagcattctgattgctgcaaaatttatggatgacgattgttatagcaatggatactatgccaaagtgggaggagtgagcacagcagagatgaacaacatggagatggcattcttgctgagtttggatttcaaactctatgtcaccacagagatgtttgggaagtattgtcagcaactggaagatgtgggaaggtaccgaagacatgggcactttttaaggttaagacaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

141

Amino Acids

16.42

Weight (kDa)

8.81

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05327
fragaria_vesca FvH4_6g05780
prunus_persica Prupe.6G326500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454701
rosa_laevigata RLG00000025423
rosa_multiflora Rmu_sc0001792.1_g000026 Rmu_sc0003140.1_g000003
rosa_roxburghii Rroxscaffold_6G00424850
rosa_rugosa Rorug03G0001300.1 Rorug03G0001400 Rorug03G0001500 Rorug03G0001600
rosa_samantha Rh3AG061200 Rh3BG063000 Rh3CG061900 Rh3DG062800
rosa_wichuraiana Rw3G004780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
Acc65I GGTACC 1 cut(s) 387
AccB1I GGYRCC 1 cut(s) 387
AclI AACGTT 1 cut(s) 174
AcsI RAATTY 1 cut(s) 215
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 3 cut(s) 83, 148, 389
AflII CTTAAG 1 cut(s) 46
AgsI TTSAA 2 cut(s) 79, 325
AluBI AGCT 1 cut(s) 90
AluI AGCT 1 cut(s) 90
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 1 cut(s) 164
AlwNI CAGNNNCTG 1 cut(s) 370
ApeKI GCWGC 3 cut(s) 90, 93, 209
ApoI RAATTY 1 cut(s) 215
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
Asp700I GAANNNNTTC 1 cut(s) 135
Asp718I GGTACC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 72
AsuHPI GGTGA 3 cut(s) 170, 184, 328
BaeGI GKGCMC 1 cut(s) 405
BanI GGYRCC 1 cut(s) 387
BbsI GAAGAC 1 cut(s) 400
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 77, 105, 196
BccI CCATC 1 cut(s) 292
BciVI GTATCC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 164
BfmI CTRYAG 1 cut(s) 91
BfrI CTTAAG 1 cut(s) 46
BfuI GTATCC 1 cut(s) 239
BisI GCNGC 3 cut(s) 91, 94, 210
BlsI GCNGC 3 cut(s) 92, 95, 211
BmcAI AGTACT 1 cut(s) 83
BmiI GGNNCC 1 cut(s) 389
BmrI ACTGGG 1 cut(s) 159
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 400
BpuEI CTTGAG 1 cut(s) 70
BsaHI GRCGYC 1 cut(s) 9
Bse118I RCCGGY 1 cut(s) 180
Bse1I ACTGG 2 cut(s) 154, 375
Bse3DI GCAATG 1 cut(s) 247
BseGI GGATG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 2 cut(s) 45, 302
BseNI ACTGG 2 cut(s) 154, 375
BseRI GAGGAG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 405
BseXI GCAGC 3 cut(s) 77, 105, 196
BshNI GGYRCC 1 cut(s) 387
BsiHKAI GWGCWC 1 cut(s) 275
BsiSI CCGG 1 cut(s) 181
BslFI GGGAC 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 164
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 2 cut(s) 198, 302
Bsp1286I GDGCHC 2 cut(s) 275, 405
BspCNI CTCAG 2 cut(s) 44, 303
BspLI GGNNCC 1 cut(s) 389
BspMAI CTGCAG 1 cut(s) 95
BspT107I GGYRCC 1 cut(s) 387
BspTI CTTAAG 1 cut(s) 46
BsrDI GCAATG 1 cut(s) 247
BsrFI RCCGGY 1 cut(s) 180
BsrI ACTGG 2 cut(s) 154, 375
BssAI RCCGGY 1 cut(s) 180
BssNI GRCGYC 1 cut(s) 9
BstACI GRCGYC 1 cut(s) 9
BstAFI CTTAAG 1 cut(s) 46
BstAPI GCANNNNNTGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 31, 311
BstF5I GGATG 1 cut(s) 229
BstHHI GCGC 1 cut(s) 72
BstMAI GTCTC 1 cut(s) 164
BstMWI GCNNNNNNNGC 1 cut(s) 102
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 405
BstV1I GCAGC 3 cut(s) 77, 105, 196
BstV2I GAAGAC 1 cut(s) 400
BsuI GTATCC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 229
CaiI CAGNNNCTG 1 cut(s) 370
CfoI GCGC 1 cut(s) 72
Cfr10I RCCGGY 1 cut(s) 180
Csp6I GTAC 3 cut(s) 82, 147, 388
CviAII CATG 3 cut(s) 26, 292, 398
CviJI RGCY 2 cut(s) 90, 184
CviKI_1 RGCY 2 cut(s) 90, 184
CviQI GTAC 3 cut(s) 82, 147, 388
DdeI CTNAG 2 cut(s) 31, 311
FaeI CATG 3 cut(s) 29, 295, 401
FaqI GGGAC 1 cut(s) 166
FatI CATG 3 cut(s) 25, 291, 397
Fnu4HI GCNGC 3 cut(s) 91, 94, 210
FokI GGATG 1 cut(s) 236
Fsp4HI GCNGC 3 cut(s) 91, 94, 210
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 91, 94, 210
HapII CCGG 1 cut(s) 181
HhaI GCGC 1 cut(s) 72
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 29, 295, 401
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HpaII CCGG 1 cut(s) 181
HphI GGTGA 3 cut(s) 170, 184, 328
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 2 cut(s) 34, 204
Hpy8I GTNNAC 1 cut(s) 178
HpyAV CCTTC 1 cut(s) 378
HpyCH4IV ACGT 3 cut(s) 9, 145, 174
HpyCH4V TGCA 3 cut(s) 93, 116, 212
HpyF10VI GCNNNNNNNGC 1 cut(s) 102
HpyF3I CTNAG 2 cut(s) 31, 311
HpySE526I ACGT 3 cut(s) 9, 145, 174
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 29, 295, 401
HspAI GCGC 1 cut(s) 70
KpnI GGTACC 1 cut(s) 391
LpnPI CCDG 5 cut(s) 54, 135, 194, 208, 356
Lsp1109I GCAGC 3 cut(s) 77, 105, 196
LweI GCATC 1 cut(s) 81
MaeII ACGT 3 cut(s) 9, 145, 174
MaeIII GTNAC 1 cut(s) 334
MboII GAAGA 3 cut(s) 67, 386, 405
MhlI GDGCHC 2 cut(s) 275, 405
MluCI AATT 1 cut(s) 215
MnlI CCTC 2 cut(s) 40, 257
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 4 cut(s) 47, 188, 410, 416
MslI CAYNNNNRTG 3 cut(s) 17, 296, 344
MspCI CTTAAG 1 cut(s) 46
MspI CCGG 1 cut(s) 181
Mva1269I GAATGC 2 cut(s) 198, 302
MwoI GCNNNNNNNGC 1 cut(s) 102
NlaIII CATG 3 cut(s) 29, 295, 401
NlaIV GGNNCC 1 cut(s) 389
NmuCI GTSAC 1 cut(s) 334
PctI GAATGC 2 cut(s) 198, 302
PdmI GAANNNNTTC 1 cut(s) 135
PkrI GCNGC 3 cut(s) 92, 95, 211
Psp1406I AACGTT 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 389
PstI CTGCAG 1 cut(s) 95
PstNI CAGNNNCTG 1 cut(s) 370
RsaI GTAC 3 cut(s) 83, 148, 389
RsaNI GTAC 3 cut(s) 82, 147, 388
RseI CAYNNNNRTG 3 cut(s) 17, 296, 344
SaqAI TTAA 4 cut(s) 47, 188, 410, 416
SatI GCNGC 3 cut(s) 91, 94, 210
ScaI AGTACT 1 cut(s) 83
SduI GDGCHC 2 cut(s) 275, 405
SetI ASST 6 cut(s) 12, 92, 148, 177, 389, 416
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 91
SmiMI CAYNNNNRTG 3 cut(s) 17, 296, 344
SmlI CTYRAG 2 cut(s) 46, 85
SmoI CTYRAG 2 cut(s) 46, 85
Sse9I AATT 1 cut(s) 215
TaiI ACGT 3 cut(s) 12, 148, 177
TaqI TCGA 1 cut(s) 129
TasI AATT 1 cut(s) 215
TatI WGTACW 1 cut(s) 81
Tru1I TTAA 4 cut(s) 47, 188, 410, 416
Tru9I TTAA 4 cut(s) 47, 188, 410, 416
TseFI GTSAC 1 cut(s) 334
TseI GCWGC 3 cut(s) 90, 93, 209
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 2 cut(s) 17, 299
Vha464I CTTAAG 1 cut(s) 46
XapI RAATTY 1 cut(s) 215
XmnI GAANNNNTTC 1 cut(s) 135
ZraI GACGTC 1 cut(s) 10
ZrmI AGTACT 1 cut(s) 83
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.