FvH4_6g05780

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0013926
Physical Location & Seq
Reverse (-)
3289084 .. 3290812
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g05780.t1

Sequence Viewer

Length: 687 bp
ATGGCTGTAATCTCGGGTTCTTTCTCATCTTTGGAGTTAGAGAAATATGGAGAAGGACTGCTTACAGAAAAACCGCGAGTTTTATCAGTCCTCTCTTCAATTCTGGAGAGATCAGTTCAAAAGAATGAGAAATTAGTAAGGGCATCAAAGATGAAGGACGTCGTTACAATGTTCCATGCATCAGAAGCTCCTGCCTTAAGCATTACAAAGTACATAGAGCGCATCTTCAAGTACTCAAGCTGCAGCAATTCTTGCTTTGTTGTTGCATACATATACATGGAAAGATTTCTGCAACGTACGGGGACTTGTCTCACTTCTCTCAACGTTCACCGGCTTTTAATCACCAGCATTCTAGTTGCTGCAAAATTTATGGATGTTGATTGTTATAGCAATGGCTACTATGCCAAAGTGGGAGGAGTGAGCATTGGAGAGATGAACAACCTAGAGATGACATTCTTGTTGAGTTTGGATTTCAAACTCCATGTCACCACAGAGATGTTTGAGAAGTATTGTCAGCAACTTGAAGATGTGGGAGGGCACCAAACTGGGCACTTCAGAAAGGTTCAGACCTTGAAAGATGATTGGACCATAATCGAAGCAACATTAACGCGCCATAGTCGAAGCAAACAAACAGTACTAGTGAAGTATCAGAAGGACAAGGCTTGTGTATTTTCATGGTTAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

229

Amino Acids

25.95

Weight (kDa)

8.81

Isoelectric Point (pI)

33.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 37 - 160 2.1e-35 Cyclin
Cyclin_N PF00134 68 - 160 2.2e-10 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05327
fragaria_vesca FvH4_6g05780
prunus_persica Prupe.6G326500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454701
rosa_laevigata RLG00000025423
rosa_multiflora Rmu_sc0001792.1_g000026 Rmu_sc0003140.1_g000003
rosa_roxburghii Rroxscaffold_6G00424850
rosa_rugosa Rorug03G0001300.1 Rorug03G0001400 Rorug03G0001500 Rorug03G0001600
rosa_samantha Rh3AG061200 Rh3BG063000 Rh3CG061900 Rh3DG062800
rosa_wichuraiana Rw3G004780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 162
AccB1I GGYRCC 1 cut(s) 537
AccII CGCG 2 cut(s) 76, 610
AciI CCGC 1 cut(s) 74
AclI AACGTT 1 cut(s) 324
AcsI RAATTY 1 cut(s) 365
AcuI CTGAAG 1 cut(s) 538
AcyI GRCGYC 1 cut(s) 159
AfaI GTAC 4 cut(s) 212, 233, 298, 636
AflII CTTAAG 1 cut(s) 196
AgsI TTSAA 6 cut(s) 99, 119, 229, 475, 524, 574
AhlI ACTAGT 1 cut(s) 637
AluBI AGCT 2 cut(s) 188, 240
AluI AGCT 2 cut(s) 188, 240
Alw26I GTCTC 1 cut(s) 314
Ama87I CYCGRG 1 cut(s) 13
ApeKI GCWGC 3 cut(s) 240, 243, 359
ApoI RAATTY 1 cut(s) 365
ArsI GACNNNNNNTTYG 2 cut(s) 468, 500
Asp700I GAANNNNTTC 1 cut(s) 285
AspLEI GCGC 2 cut(s) 222, 612
AspS9I GGNCC 1 cut(s) 585
AsuHPI GGTGA 3 cut(s) 320, 334, 478
AvaI CYCGRG 1 cut(s) 13
AvaII GGWCC 1 cut(s) 585
BaeGI GKGCMC 2 cut(s) 540, 552
BanI GGYRCC 1 cut(s) 537
BbvI GCAGC 3 cut(s) 227, 255, 346
BcoDI GTCTC 1 cut(s) 314
BcuI ACTAGT 1 cut(s) 637
BfaI CTAG 3 cut(s) 353, 443, 638
BfmI CTRYAG 1 cut(s) 241
BfrI CTTAAG 1 cut(s) 196
BisI GCNGC 3 cut(s) 241, 244, 360
BlsI GCNGC 3 cut(s) 242, 245, 361
BmcAI AGTACT 2 cut(s) 233, 636
Bme18I GGWCC 1 cut(s) 585
BmeT110I CYCGRG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 585
BmiI GGNNCC 1 cut(s) 539
BmrI ACTGGG 1 cut(s) 555
BmsI GCATC 3 cut(s) 152, 188, 231
BmuI ACTGGG 1 cut(s) 555
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 159
Bse118I RCCGGY 1 cut(s) 330
Bse1I ACTGG 1 cut(s) 550
Bse3DI GCAATG 1 cut(s) 397
BseGI GGATG 1 cut(s) 379
BseMI GCAATG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 550
BseRI GAGGAG 1 cut(s) 429
BseSI GKGCMC 2 cut(s) 540, 552
BseXI GCAGC 3 cut(s) 227, 255, 346
Bsh1236I CGCG 2 cut(s) 76, 610
BshNI GGYRCC 1 cut(s) 537
BsiHKCI CYCGRG 1 cut(s) 13
BsiSI CCGG 1 cut(s) 331
BsiWI CGTACG 1 cut(s) 296
BslFI GGGAC 1 cut(s) 316
BsmAI GTCTC 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 316
BsmI GAATGC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 540, 552
Bsp143I GATC 1 cut(s) 110
BspACI CCGC 1 cut(s) 74
BspFNI CGCG 2 cut(s) 76, 610
BspLI GGNNCC 1 cut(s) 539
BspMAI CTGCAG 1 cut(s) 245
BspT107I GGYRCC 1 cut(s) 537
BspTI CTTAAG 1 cut(s) 196
BsrDI GCAATG 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 330
BsrI ACTGG 1 cut(s) 550
BssAI RCCGGY 1 cut(s) 330
BssMI GATC 1 cut(s) 110
BssNI GRCGYC 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 634
Bst6I CTCTTC 1 cut(s) 100
BstACI GRCGYC 1 cut(s) 159
BstAFI CTTAAG 1 cut(s) 196
BstAPI GCANNNNNTGC 1 cut(s) 252
BstF5I GGATG 1 cut(s) 379
BstFNI CGCG 2 cut(s) 76, 610
BstHHI GCGC 2 cut(s) 222, 612
BstKTI GATC 1 cut(s) 113
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 1 cut(s) 110
BstMWI GCNNNNNNNGC 2 cut(s) 185, 252
BstSFI CTRYAG 1 cut(s) 241
BstSLI GKGCMC 2 cut(s) 540, 552
BstUI CGCG 2 cut(s) 76, 610
BstV1I GCAGC 3 cut(s) 227, 255, 346
BtsCI GGATG 1 cut(s) 379
CfoI GCGC 2 cut(s) 222, 612
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 585
Csp6I GTAC 4 cut(s) 211, 232, 297, 635
CviAII CATG 4 cut(s) 176, 277, 482, 675
CviJI RGCY 6 cut(s) 5, 188, 240, 334, 396, 662
CviKI_1 RGCY 6 cut(s) 5, 188, 240, 334, 396, 662
CviQI GTAC 4 cut(s) 211, 232, 297, 635
DpnI GATC 1 cut(s) 112
DpnII GATC 1 cut(s) 110
Eam1104I CTCTTC 1 cut(s) 100
EarI CTCTTC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 585
Eco57I CTGAAG 1 cut(s) 538
Eco88I CYCGRG 1 cut(s) 13
EcoT22I ATGCAT 1 cut(s) 181
FaeI CATG 4 cut(s) 179, 280, 485, 678
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FaqI GGGAC 1 cut(s) 316
FatI CATG 4 cut(s) 175, 276, 481, 674
Fnu4HI GCNGC 3 cut(s) 241, 244, 360
FokI GGATG 1 cut(s) 386
Fsp4HI GCNGC 3 cut(s) 241, 244, 360
FspBI CTAG 3 cut(s) 353, 443, 638
GlaI GCGC 2 cut(s) 221, 611
GluI GCNGC 3 cut(s) 241, 244, 360
GsuI CTGGAG 1 cut(s) 125
HapII CCGG 1 cut(s) 331
HhaI GCGC 2 cut(s) 222, 612
Hin1I GRCGYC 1 cut(s) 159
Hin1II CATG 4 cut(s) 179, 280, 485, 678
Hin6I GCGC 2 cut(s) 220, 610
HinP1I GCGC 2 cut(s) 220, 610
HincII GTYRAC 1 cut(s) 681
HindII GTYRAC 1 cut(s) 681
HpaI GTTAAC 1 cut(s) 681
HpaII CCGG 1 cut(s) 331
HphI GGTGA 3 cut(s) 320, 334, 478
Hpy166II GTNNAC 2 cut(s) 328, 681
Hpy188I TCNGA 4 cut(s) 184, 557, 567, 651
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 2 cut(s) 328, 681
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 3 cut(s) 47, 148, 646
HpyCH4III ACNGT 1 cut(s) 634
HpyCH4IV ACGT 3 cut(s) 159, 295, 324
HpyCH4V TGCA 5 cut(s) 179, 243, 266, 292, 362
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 252
HpySE526I ACGT 3 cut(s) 159, 295, 324
Hsp92I GRCGYC 1 cut(s) 159
Hsp92II CATG 4 cut(s) 179, 280, 485, 678
HspAI GCGC 2 cut(s) 220, 610
KspAI GTTAAC 1 cut(s) 681
Kzo9I GATC 1 cut(s) 110
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 89, 204, 344, 358, 531
Lsp1109I GCAGC 3 cut(s) 227, 255, 346
LweI GCATC 3 cut(s) 152, 188, 231
MaeI CTAG 3 cut(s) 353, 443, 638
MaeII ACGT 3 cut(s) 159, 295, 324
MaeIII GTNAC 2 cut(s) 163, 484
MalI GATC 1 cut(s) 112
MboI GATC 1 cut(s) 110
MboII GAAGA 3 cut(s) 87, 217, 536
MhlI GDGCHC 2 cut(s) 540, 552
MluCI AATT 4 cut(s) 99, 131, 247, 365
MnlI CCTC 3 cut(s) 101, 407, 527
Mph1103I ATGCAT 1 cut(s) 181
MroXI GAANNNNTTC 1 cut(s) 285
MseI TTAA 4 cut(s) 197, 338, 605, 680
MslI CAYNNNNRTG 2 cut(s) 275, 494
MspCI CTTAAG 1 cut(s) 196
MspI CCGG 1 cut(s) 331
Mva1269I GAATGC 1 cut(s) 348
MvnI CGCG 2 cut(s) 76, 610
MwoI GCNNNNNNNGC 2 cut(s) 185, 252
NdeII GATC 1 cut(s) 110
NlaIII CATG 4 cut(s) 179, 280, 485, 678
NlaIV GGNNCC 1 cut(s) 539
NmuCI GTSAC 1 cut(s) 484
NsiI ATGCAT 1 cut(s) 181
PctI GAATGC 1 cut(s) 348
PdmI GAANNNNTTC 1 cut(s) 285
Pfl23II CGTACG 1 cut(s) 296
PkrI GCNGC 3 cut(s) 242, 245, 361
Psp1406I AACGTT 1 cut(s) 324
PspLI CGTACG 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 539
PspPI GGNCC 1 cut(s) 585
PstI CTGCAG 1 cut(s) 245
RsaI GTAC 4 cut(s) 212, 233, 298, 636
RsaNI GTAC 4 cut(s) 211, 232, 297, 635
RseI CAYNNNNRTG 2 cut(s) 275, 494
SaqAI TTAA 4 cut(s) 197, 338, 605, 680
SatI GCNGC 3 cut(s) 241, 244, 360
Sau3AI GATC 1 cut(s) 110
Sau96I GGNCC 1 cut(s) 585
ScaI AGTACT 2 cut(s) 233, 636
SduI GDGCHC 2 cut(s) 540, 552
SetI ASST 9 cut(s) 162, 190, 242, 298, 327, 444, 564, 572, 686
SfaNI GCATC 3 cut(s) 152, 188, 231
SfcI CTRYAG 1 cut(s) 241
SinI GGWCC 1 cut(s) 585
SmiMI CAYNNNNRTG 2 cut(s) 275, 494
SmlI CTYRAG 2 cut(s) 196, 235
SmoI CTYRAG 2 cut(s) 196, 235
SpeI ACTAGT 1 cut(s) 637
Sse9I AATT 4 cut(s) 99, 131, 247, 365
SsiI CCGC 1 cut(s) 74
SspMI CTAG 3 cut(s) 353, 443, 638
TaaI ACNGT 1 cut(s) 634
TaiI ACGT 3 cut(s) 162, 298, 327
TaqI TCGA 2 cut(s) 594, 619
TasI AATT 4 cut(s) 99, 131, 247, 365
TatI WGTACW 3 cut(s) 210, 231, 634
Tru1I TTAA 4 cut(s) 197, 338, 605, 680
Tru9I TTAA 4 cut(s) 197, 338, 605, 680
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 3 cut(s) 240, 243, 359
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 167, 449, 663
Vha464I CTTAAG 1 cut(s) 196
VpaK11BI GGWCC 1 cut(s) 585
XapI RAATTY 1 cut(s) 365
XmnI GAANNNNTTC 1 cut(s) 285
XspI CTAG 3 cut(s) 353, 443, 638
ZraI GACGTC 1 cut(s) 160
ZrmI AGTACT 2 cut(s) 233, 636
Zsp2I ATGCAT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.