Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013926

Physical Location & Seq

Genomic Coordinates Forward (+)

28683825 .. 28684809

Gene Structure 985 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G326500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGGAACAGTGGCACTTGATGCCATGGTGTTCACCGCTTTGGGAATATTGGGAAAATCTGCAACAAGAACACCGCGAGTTTTATCGGTTGTTTCTTCGGTTTTCGAGAGATCCATTCGAAAGAATGAGAAATTAATTAGGCGATCAAAGATGAAAGATGTGATTACAATGTTCCACGCATCAGAAGTTCCCGCCTTGAGCATAAGACGGTATATCGAGCGCATTTTCAAGTACTCAAGCTGCAGCCCATCTTGCTTTGTTGTTGCATACATATACATCGAAAGGTTCCTTCAACGCACAGGGATTTGTCTTACTTCTCTCAACATTCACCGCCTTTTGATCACCAGCATTATGGTCGCTGCAAAATTTATGGATGATGAATGTTATAGCAACGCCCACTATGCCAAAATTGGAGGTGTGAGCTTATCTGAGTTGAACAAATTAGAGATTGAATTCTTGTTGAGTCTGGATTTTAAACTCCATGTAACTATAAACATGTTTGGAAAGTACTGTCGGCAGCTTGAGGATGGTGTTGGAGAGAACCAAATTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin

Protein Analysis

185

Amino Acids

20.85

Weight (kDa)

9.26

Isoelectric Point (pI)

51.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0013926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05327
fragaria_vesca	FvH4_6g05780
prunus_persica	Prupe.6G326500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0454701
rosa_laevigata	RLG00000025423
rosa_multiflora	Rmu_sc0001792.1_g000026 Rmu_sc0003140.1_g000003
rosa_roxburghii	Rroxscaffold_6G00424850
rosa_rugosa	Rorug03G0001300.1 Rorug03G0001400 Rorug03G0001500 Rorug03G0001600
rosa_samantha	Rh3AG061200 Rh3BG063000 Rh3CG061900 Rh3DG062800
rosa_wichuraiana	Rw3G004780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	76
AciI	CCGC	4 cut(s)	36, 74, 192, 331
AclWI	GGATC	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	365, 452
AfaI	GTAC	2 cut(s)	233, 509
AflIII	ACRYGT	1 cut(s)	495
AgsI	TTSAA	4 cut(s)	229, 293, 436, 452
AluBI	AGCT	3 cut(s)	240, 423, 520
AluI	AGCT	3 cut(s)	240, 423, 520
AlwI	GGATC	1 cut(s)	105
ApeKI	GCWGC	4 cut(s)	240, 243, 359, 517
ApoI	RAATTY	2 cut(s)	365, 452
AseI	ATTAAT	1 cut(s)	134
AspLEI	GCGC	1 cut(s)	222
AsuHPI	GGTGA	3 cut(s)	25, 320, 334
AsuII	TTCGAA	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	227, 255, 346, 529
BccI	CCATC	2 cut(s)	256, 521
BcgI	CGANNNNNNTGC	2 cut(s)	337, 371
BclI	TGATCA	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	241
BisI	GCNGC	4 cut(s)	241, 244, 360, 518
BlsI	GCNGC	4 cut(s)	242, 245, 361, 519
BmcAI	AGTACT	2 cut(s)	233, 509
BmiI	GGNNCC	1 cut(s)	287
BmsI	GCATC	2 cut(s)	10, 188
Bpu14I	TTCGAA	1 cut(s)	118
BpuEI	CTTGAG	3 cut(s)	217, 220, 542
BsaJI	CCNNGG	1 cut(s)	24
BseDI	CCNNGG	1 cut(s)	24
BseGI	GGATG	2 cut(s)	379, 532
BseMII	CTCAG	1 cut(s)	420
BseXI	GCAGC	4 cut(s)	227, 255, 346, 529
Bsh1236I	CGCG	1 cut(s)	76
Bsp119I	TTCGAA	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	110, 143, 339
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	4 cut(s)	36, 74, 192, 331
BspCNI	CTCAG	1 cut(s)	421
BspFNI	CGCG	1 cut(s)	76
BspLI	GGNNCC	1 cut(s)	287
BspMAI	CTGCAG	1 cut(s)	245
BspPI	GGATC	1 cut(s)	105
BspT104I	TTCGAA	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	24
BssMI	GATC	3 cut(s)	110, 143, 339
BssT1I	CCWWGG	1 cut(s)	24
Bst4CI	ACNGT	3 cut(s)	10, 210, 512
BstAPI	GCANNNNNTGC	1 cut(s)	20
BstBI	TTCGAA	1 cut(s)	118
BstDEI	CTNAG	1 cut(s)	429
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	379, 532
BstFNI	CGCG	1 cut(s)	76
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	3 cut(s)	113, 146, 342
BstMBI	GATC	3 cut(s)	110, 143, 339
BstMWI	GCNNNNNNNGC	3 cut(s)	20, 252, 401
BstNSI	RCATGY	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	76
BstV1I	GCAGC	4 cut(s)	227, 255, 346, 529
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	110
BtgI	CCRYGG	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	379, 532
BtsIMutI	CAGTG	1 cut(s)	15
CfoI	GCGC	1 cut(s)	222
Csp6I	GTAC	2 cut(s)	232, 508
CviAII	CATG	3 cut(s)	25, 482, 496
CviJI	RGCY	4 cut(s)	240, 246, 423, 520
CviKI_1	RGCY	4 cut(s)	240, 246, 423, 520
CviQI	GTAC	2 cut(s)	232, 508
DdeI	CTNAG	1 cut(s)	429
DpnI	GATC	3 cut(s)	112, 145, 341
DpnII	GATC	3 cut(s)	110, 143, 339
DraI	TTTAAA	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	24
EcoRI	GAATTC	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	3 cut(s)	28, 485, 499
FatI	CATG	3 cut(s)	24, 481, 495
FauI	CCCGC	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	339
Fnu4HI	GCNGC	4 cut(s)	241, 244, 360, 518
FokI	GGATG	2 cut(s)	386, 539
Fsp4HI	GCNGC	4 cut(s)	241, 244, 360, 518
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	4 cut(s)	241, 244, 360, 518
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	28, 485, 499
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	463
HphI	GGTGA	3 cut(s)	25, 320, 334
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	184, 430
Hpy188III	TCNNGA	2 cut(s)	106, 467
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	299
HpyCH4III	ACNGT	3 cut(s)	10, 210, 512
HpyCH4V	TGCA	4 cut(s)	62, 243, 266, 362
HpyF10VI	GCNNNNNNNGC	3 cut(s)	20, 252, 401
HpyF3I	CTNAG	1 cut(s)	429
Hsp92II	CATG	3 cut(s)	28, 485, 499
HspAI	GCGC	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	339
Kzo9I	GATC	3 cut(s)	110, 143, 339
LpnPI	CCDG	3 cut(s)	285, 358, 452
Lsp1109I	GCAGC	4 cut(s)	227, 255, 346, 529
LweI	GCATC	2 cut(s)	10, 188
MaeIII	GTNAC	1 cut(s)	484
MalI	GATC	3 cut(s)	112, 145, 341
MboI	GATC	3 cut(s)	110, 143, 339
MboII	GAAGA	1 cut(s)	87
MflI	RGATCY	1 cut(s)	110
MluCI	AATT	7 cut(s)	131, 135, 365, 408, 440, 452, 546
MlyI	GAGTC	1 cut(s)	472
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	2 cut(s)	407, 517
MseI	TTAA	2 cut(s)	134, 474
MvnI	CGCG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	20, 252, 401
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	3 cut(s)	110, 143, 339
NlaIII	CATG	3 cut(s)	28, 485, 499
NlaIV	GGNNCC	1 cut(s)	287
NspI	RCATGY	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	118
PciI	ACATGT	1 cut(s)	495
PkrI	GCNGC	4 cut(s)	242, 245, 361, 519
PleI	GAGTC	1 cut(s)	471
PpsI	GAGTC	1 cut(s)	471
PscI	ACATGT	1 cut(s)	495
PshBI	ATTAAT	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	287
PstI	CTGCAG	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	2 cut(s)	233, 509
RsaNI	GTAC	2 cut(s)	232, 508
SaqAI	TTAA	2 cut(s)	134, 474
SatI	GCNGC	4 cut(s)	241, 244, 360, 518
Sau3AI	GATC	3 cut(s)	110, 143, 339
ScaI	AGTACT	2 cut(s)	233, 509
SchI	GAGTC	1 cut(s)	472
SetI	ASST	5 cut(s)	242, 287, 418, 425, 522
SfaNI	GCATC	2 cut(s)	10, 188
SfcI	CTRYAG	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	118
SmlI	CTYRAG	3 cut(s)	196, 235, 521
SmoI	CTYRAG	3 cut(s)	196, 235, 521
Sse9I	AATT	7 cut(s)	131, 135, 365, 408, 440, 452, 546
SsiI	CCGC	4 cut(s)	36, 74, 192, 331
SspI	AATATT	1 cut(s)	48
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	3 cut(s)	10, 210, 512
TaqI	TCGA	4 cut(s)	105, 118, 216, 279
TasI	AATT	7 cut(s)	131, 135, 365, 408, 440, 452, 546
TatI	WGTACW	2 cut(s)	231, 507
Tru1I	TTAA	2 cut(s)	134, 474
Tru9I	TTAA	2 cut(s)	134, 474
TscAI	CASTG	1 cut(s)	15
TseI	GCWGC	4 cut(s)	240, 243, 359, 517
TspDTI	ATGAA	2 cut(s)	167, 393
TspRI	CASTG	1 cut(s)	15
VspI	ATTAAT	1 cut(s)	134
XapI	RAATTY	2 cut(s)	365, 452
XceI	RCATGY	1 cut(s)	499
ZrmI	AGTACT	2 cut(s)	233, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.