Rh3CG061900

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0013926
Physical Location & Seq
Reverse (-)
4224970 .. 4227522
2553 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG061900.1

Sequence Viewer

Length: 603 bp
ATGAGATCTGCAGGGGCACTGGATAGCATGGCTGTACTCTCGGAGACTTTCTCATCTTTGGGGTTGGAGGAATCTGCAGCAGGACATTCAGGAAAACCACGAGTTTTATCGGTCCTCTCTTCAATTCTGGAGGGATCAGTTCGAAAGAATGAGAGATTAGTAAGGCAATCAAAGATGAAGGACGTCATTACAATGTTCCATGCCTCAGAAGTTCCTGCCTTAAGCATTAGAAAGTATATTGAGCGCATCTTCAAGTACTCAAGCTGCAGCAACTCTTGCTTTGTTGTTGCATACATATACATCGAAAGATTTCTACAACGTACTGGGACTTGTCTCACTTCTCTCAACGTTCACCGGCTTTTAATCACCAGCATTCTGATTGCTGCAAAATTTATGGATGACGATTGTTATAGCAATGGCTACTATGCCAAAGTGGGAGGAGTGAGCACAGCAGAGATGAACAACATGGAGATGGCATTCTTGCTGAGTTTGGATTTCAAACTCTATGTCACCACAGAGATGTTTGGGAAGTATTGTCAGCAACTGGAAGATGTGGGAAGGTACCGAAGACATGGGCACTTTTTAAGGTTAAGACAATATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

200

Amino Acids

22.7

Weight (kDa)

9.08

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 57 - 168 1.6e-37 Cyclin
Cyclin_N PF00134 78 - 168 1.2e-11 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05327
fragaria_vesca FvH4_6g05780
prunus_persica Prupe.6G326500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454701
rosa_laevigata RLG00000025423
rosa_multiflora Rmu_sc0001792.1_g000026 Rmu_sc0003140.1_g000003
rosa_roxburghii Rroxscaffold_6G00424850
rosa_rugosa Rorug03G0001300.1 Rorug03G0001400 Rorug03G0001500 Rorug03G0001600
rosa_samantha Rh3AG061200 Rh3BG063000 Rh3CG061900 Rh3DG062800
rosa_wichuraiana Rw3G004780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 186
Acc65I GGTACC 1 cut(s) 561
AccB1I GGYRCC 1 cut(s) 561
AclI AACGTT 1 cut(s) 348
AclWI GGATC 1 cut(s) 142
AcsI RAATTY 1 cut(s) 389
AcyI GRCGYC 1 cut(s) 183
AfaI GTAC 4 cut(s) 36, 257, 322, 563
AflII CTTAAG 1 cut(s) 220
AgsI TTSAA 3 cut(s) 123, 253, 499
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
Alw21I GWGCWC 1 cut(s) 449
Alw26I GTCTC 2 cut(s) 38, 338
AlwI GGATC 1 cut(s) 142
AlwNI CAGNNNCTG 1 cut(s) 544
ApeKI GCWGC 4 cut(s) 77, 264, 267, 383
ApoI RAATTY 1 cut(s) 389
ArsI GACNNNNNNTTYG 2 cut(s) 492, 524
Asp700I GAANNNNTTC 1 cut(s) 309
Asp718I GGTACC 1 cut(s) 561
AspLEI GCGC 1 cut(s) 246
AspS9I GGNCC 1 cut(s) 112
AsuHPI GGTGA 3 cut(s) 344, 358, 502
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 1 cut(s) 112
BaeGI GKGCMC 2 cut(s) 19, 579
BanI GGYRCC 1 cut(s) 561
BauI CACGAG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 574
Bbv12I GWGCWC 1 cut(s) 449
BbvI GCAGC 4 cut(s) 89, 251, 279, 370
BccI CCATC 1 cut(s) 466
BcoDI GTCTC 2 cut(s) 38, 338
BfmI CTRYAG 3 cut(s) 9, 75, 265
BfrI CTTAAG 1 cut(s) 220
BglII AGATCT 1 cut(s) 5
BisI GCNGC 4 cut(s) 78, 265, 268, 384
BlsI GCNGC 4 cut(s) 79, 266, 269, 385
BmcAI AGTACT 1 cut(s) 257
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 563
BmrI ACTGGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 333
BpiI GAAGAC 1 cut(s) 574
BplI GAGNNNNNCTC 2 cut(s) 35, 67
BpmI CTGGAG 1 cut(s) 149
Bpu14I TTCGAA 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 183
Bse118I RCCGGY 1 cut(s) 354
Bse1I ACTGG 3 cut(s) 24, 328, 549
Bse3DI GCAATG 1 cut(s) 421
BseGI GGATG 1 cut(s) 403
BseMI GCAATG 1 cut(s) 421
BseMII CTCAG 2 cut(s) 219, 476
BseNI ACTGG 3 cut(s) 24, 328, 549
BseRI GAGGAG 1 cut(s) 453
BseSI GKGCMC 2 cut(s) 19, 579
BseXI GCAGC 4 cut(s) 89, 251, 279, 370
BshNI GGYRCC 1 cut(s) 561
BsiHKAI GWGCWC 1 cut(s) 449
BsiSI CCGG 1 cut(s) 355
BslFI GGGAC 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 38, 338
BsmFI GGGAC 1 cut(s) 340
BsmI GAATGC 2 cut(s) 372, 476
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 3 cut(s) 19, 449, 579
Bsp143I GATC 2 cut(s) 5, 134
BspCNI CTCAG 2 cut(s) 218, 477
BspLI GGNNCC 1 cut(s) 563
BspMAI CTGCAG 3 cut(s) 13, 79, 269
BspPI GGATC 1 cut(s) 142
BspT104I TTCGAA 1 cut(s) 142
BspT107I GGYRCC 1 cut(s) 561
BspTI CTTAAG 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 354
BsrI ACTGG 3 cut(s) 24, 328, 549
BssAI RCCGGY 1 cut(s) 354
BssMI GATC 2 cut(s) 5, 134
BssNI GRCGYC 1 cut(s) 183
BssSI CACGAG 1 cut(s) 99
Bst2BI CACGAG 1 cut(s) 99
Bst6I CTCTTC 1 cut(s) 124
BstACI GRCGYC 1 cut(s) 183
BstAFI CTTAAG 1 cut(s) 220
BstAPI GCANNNNNTGC 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 142
BstDEI CTNAG 2 cut(s) 205, 485
BstF5I GGATG 1 cut(s) 403
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 8, 137
BstMAI GTCTC 2 cut(s) 38, 338
BstMBI GATC 2 cut(s) 5, 134
BstMWI GCNNNNNNNGC 1 cut(s) 276
BstSFI CTRYAG 3 cut(s) 9, 75, 265
BstSLI GKGCMC 2 cut(s) 19, 579
BstV1I GCAGC 4 cut(s) 89, 251, 279, 370
BstV2I GAAGAC 1 cut(s) 574
BstX2I RGATCY 1 cut(s) 5
BstYI RGATCY 1 cut(s) 5
BtsCI GGATG 1 cut(s) 403
BtsIMutI CAGTG 1 cut(s) 17
CaiI CAGNNNCTG 1 cut(s) 544
CfoI GCGC 1 cut(s) 246
Cfr10I RCCGGY 1 cut(s) 354
Cfr13I GGNCC 1 cut(s) 112
Csp6I GTAC 4 cut(s) 35, 256, 321, 562
CviAII CATG 4 cut(s) 28, 200, 466, 572
CviJI RGCY 4 cut(s) 32, 264, 358, 420
CviKI_1 RGCY 4 cut(s) 32, 264, 358, 420
CviQI GTAC 4 cut(s) 35, 256, 321, 562
DdeI CTNAG 2 cut(s) 205, 485
DpnI GATC 2 cut(s) 7, 136
DpnII GATC 2 cut(s) 5, 134
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco47I GGWCC 1 cut(s) 112
FaeI CATG 4 cut(s) 31, 203, 469, 575
FaqI GGGAC 1 cut(s) 340
FatI CATG 4 cut(s) 27, 199, 465, 571
Fnu4HI GCNGC 4 cut(s) 78, 265, 268, 384
FokI GGATG 1 cut(s) 410
Fsp4HI GCNGC 4 cut(s) 78, 265, 268, 384
GlaI GCGC 1 cut(s) 245
GluI GCNGC 4 cut(s) 78, 265, 268, 384
GsuI CTGGAG 1 cut(s) 149
HapII CCGG 1 cut(s) 355
HhaI GCGC 1 cut(s) 246
Hin1I GRCGYC 1 cut(s) 183
Hin1II CATG 4 cut(s) 31, 203, 469, 575
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 1 cut(s) 71
HpaII CCGG 1 cut(s) 355
HphI GGTGA 3 cut(s) 344, 358, 502
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 43, 208, 378
Hpy188III TCNNGA 2 cut(s) 90, 128
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 2 cut(s) 172, 552
HpyCH4IV ACGT 3 cut(s) 183, 319, 348
HpyCH4V TGCA 5 cut(s) 11, 77, 267, 290, 386
HpyF10VI GCNNNNNNNGC 1 cut(s) 276
HpyF3I CTNAG 2 cut(s) 205, 485
HpySE526I ACGT 3 cut(s) 183, 319, 348
Hsp92I GRCGYC 1 cut(s) 183
Hsp92II CATG 4 cut(s) 31, 203, 469, 575
HspAI GCGC 1 cut(s) 244
KpnI GGTACC 1 cut(s) 565
Kzo9I GATC 2 cut(s) 5, 134
LpnPI CCDG 9 cut(s) 5, 66, 75, 113, 228, 309, 368, 382, 530
Lsp1109I GCAGC 4 cut(s) 89, 251, 279, 370
LweI GCATC 1 cut(s) 255
MaeII ACGT 3 cut(s) 183, 319, 348
MaeIII GTNAC 1 cut(s) 508
MalI GATC 2 cut(s) 7, 136
MboI GATC 2 cut(s) 5, 134
MboII GAAGA 4 cut(s) 111, 241, 560, 579
MflI RGATCY 1 cut(s) 5
MhlI GDGCHC 3 cut(s) 19, 449, 579
MluCI AATT 2 cut(s) 123, 389
MmeI TCCRAC 1 cut(s) 45
MnlI CCTC 5 cut(s) 61, 124, 125, 214, 431
MroXI GAANNNNTTC 1 cut(s) 309
MseI TTAA 5 cut(s) 221, 362, 584, 590, 601
MslI CAYNNNNRTG 3 cut(s) 191, 470, 518
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 1 cut(s) 355
Mva1269I GAATGC 2 cut(s) 372, 476
MwoI GCNNNNNNNGC 1 cut(s) 276
NdeII GATC 2 cut(s) 5, 134
NlaIII CATG 4 cut(s) 31, 203, 469, 575
NlaIV GGNNCC 1 cut(s) 563
NmuCI GTSAC 1 cut(s) 508
NspV TTCGAA 1 cut(s) 142
PctI GAATGC 2 cut(s) 372, 476
PdmI GAANNNNTTC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 4 cut(s) 79, 266, 269, 385
Psp1406I AACGTT 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 563
PspPI GGNCC 1 cut(s) 112
PstI CTGCAG 3 cut(s) 13, 79, 269
PstNI CAGNNNCTG 1 cut(s) 544
PsuI RGATCY 1 cut(s) 5
RsaI GTAC 4 cut(s) 36, 257, 322, 563
RsaNI GTAC 4 cut(s) 35, 256, 321, 562
RseI CAYNNNNRTG 3 cut(s) 191, 470, 518
SaqAI TTAA 5 cut(s) 221, 362, 584, 590, 601
SatI GCNGC 4 cut(s) 78, 265, 268, 384
Sau3AI GATC 2 cut(s) 5, 134
Sau96I GGNCC 1 cut(s) 112
ScaI AGTACT 1 cut(s) 257
SduI GDGCHC 3 cut(s) 19, 449, 579
SetI ASST 6 cut(s) 186, 266, 322, 351, 563, 590
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 3 cut(s) 9, 75, 265
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 3 cut(s) 191, 470, 518
SmlI CTYRAG 2 cut(s) 220, 259
SmoI CTYRAG 2 cut(s) 220, 259
Sse9I AATT 2 cut(s) 123, 389
SspI AATATT 1 cut(s) 599
TaiI ACGT 3 cut(s) 186, 322, 351
TaqI TCGA 2 cut(s) 142, 303
TaqII GACCGA 1 cut(s) 100
TasI AATT 2 cut(s) 123, 389
TatI WGTACW 2 cut(s) 34, 255
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 5 cut(s) 221, 362, 584, 590, 601
Tru9I TTAA 5 cut(s) 221, 362, 584, 590, 601
TscAI CASTG 1 cut(s) 24
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 4 cut(s) 77, 264, 267, 383
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 2 cut(s) 191, 473
TspRI CASTG 1 cut(s) 24
Vha464I CTTAAG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 1 cut(s) 389
XmnI GAANNNNTTC 1 cut(s) 309
ZraI GACGTC 1 cut(s) 184
ZrmI AGTACT 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.