Rorug03G0001500

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013926
Physical Location & Seq
Reverse (-)
163204 .. 167792
4589 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0001500.1

Sequence Viewer

Length: 1200 bp
ATGGCTCTCTGCAGGCTCAACACCTTCCCATCTCACACGCTCATCCCTTGTTCTTCTTCTTCTTCTTCTTCTAAGTCCCGCAATTTCAGATCTCCAAAAATCTTCATGGCCTCCACTCCTTATTCCGTCTCCAGAGAGACTGAGAAGATGAAGAAAACTCAATTCCCTCCACGCGAGTCACACATTCAAGTGACTCATTCCATGCCTCCTGAACACCTTGAGATCTTCAAGTCCTTAGAGGAGTGGGCTGATGATAACATCTTGGTGCACCTAAAGCCTGTTGAGAAATGTTGGCAAGCACAAGATTTTCTTCCTGCCCCTGAGTCGGAGGGATTCTATGAGCAAGTAAAGGAGTTGAGGGAAAGAGCAAAAGAAATTCCTGATGATTATTTTGTGGTCTTGGTTGGAGATATGGTCACAGAAGAAGCTCTTCCAACATACCAGACAATGCTTAATACTCTAGATGGAGTTCGGGATGAGACTGGTGCAAGCCTCACCTCCTGGGCAAGATGGACCAGGGCATGGACTGCTGAAGAGAATAGGCATGGAGACCTTCTAAACAAGTATCTCTATCTCTCTGGACGAGTAGACATGAAACAAATCGAGAAGACAATTCAGTATCTTATTGGATCAGGAATGGATCCTAAAACGGAGAACAATCCCTACCTTGGTTTCATTTATACTTCATTTCAAGAGAGGGCTACCTTCATCTCCCATGGGAACACAGCCAGGCAAGCAAAAGAGCATGGGGACATGAAATTGGCTCAGATATGTGGCACCATTGCCTCGGATGAAAAACGTCATGAAACTGCCTATACAAAGATTGTGGAGAAGCTCTTTGAGATAGACCCAGATGGCACTGTATTGGCTTTAGCTGACATGATGAAGAAAAAAATAACAATGCCTGCCCACTTGATGTATGATGGTCAGGATTATAATCTTTTCGAGAATTTCTCAGCTGTTGCCCAGCGGCTGGAAGTTTATACGGCCAAGGATTACGCTGATATTTTGGAGTTTCTGGTTGGTAGATGGAAAATAGAGGAGTTGACTGGTCTTTCTGGTGAGGGTCGTAGAGCACAAGATTTCGTATGTGGATTGCCACCGAGAATTAGAAGGTTGGAGGAGAGAGCTCAGGGAAGAGCCAAGAAATCATCCAGTGTTCCATTCAGCTGGCTTTTTGGTAGAGAGATAATTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

399

Amino Acids

45.73

Weight (kDa)

6.0

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FA_desaturase_2 PF03405 72 - 393 5.3e-160 Fatty acid desaturase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05327
fragaria_vesca FvH4_6g05780
prunus_persica Prupe.6G326500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454701
rosa_laevigata RLG00000025423
rosa_multiflora Rmu_sc0001792.1_g000026 Rmu_sc0003140.1_g000003
rosa_roxburghii Rroxscaffold_6G00424850
rosa_rugosa Rorug03G0001300.1 Rorug03G0001400 Rorug03G0001500 Rorug03G0001600
rosa_samantha Rh3AG061200 Rh3BG063000 Rh3CG061900 Rh3DG062800
rosa_wichuraiana Rw3G004780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 936
AccB1I GGYRCC 1 cut(s) 776
AccB7I CCANNNNNTGG 2 cut(s) 522, 973
AccI GTMKAC 1 cut(s) 588
AccII CGCG 1 cut(s) 174
AciI CCGC 2 cut(s) 79, 970
AclWI GGATC 3 cut(s) 635, 637, 648
AcoI YGGCCR 1 cut(s) 987
AcsI RAATTY 2 cut(s) 375, 949
AcuI CTGAAG 1 cut(s) 552
AfiI CCNNNNNNNGG 4 cut(s) 325, 522, 668, 973
AgsI TTSAA 3 cut(s) 188, 229, 692
AjnI CCWGG 3 cut(s) 500, 515, 728
AluBI AGCT 6 cut(s) 428, 835, 875, 959, 1130, 1170
AluI AGCT 6 cut(s) 428, 835, 875, 959, 1130, 1170
Alw21I GWGCWC 3 cut(s) 270, 1078, 1132
Alw26I GTCTC 4 cut(s) 131, 133, 473, 543
Alw44I GTGCAC 1 cut(s) 266
AlwI GGATC 3 cut(s) 635, 637, 648
AlwNI CAGNNNCTG 1 cut(s) 973
AoxI GGCC 2 cut(s) 108, 987
ApaLI GTGCAC 1 cut(s) 266
ApoI RAATTY 2 cut(s) 375, 949
Asp700I GAANNNNTTC 1 cut(s) 429
AspS9I GGNCC 1 cut(s) 513
AsuHPI GGTGA 2 cut(s) 487, 1073
AvaII GGWCC 1 cut(s) 513
BaeGI GKGCMC 1 cut(s) 270
BamHI GGATCC 1 cut(s) 640
BanI GGYRCC 1 cut(s) 776
BanII GRGCYC 1 cut(s) 1132
BbsI GAAGAC 1 cut(s) 614
Bbv12I GWGCWC 3 cut(s) 270, 1078, 1132
BccI CCATC 6 cut(s) 37, 458, 504, 848, 917, 1023
BceAI ACGGC 1 cut(s) 1002
BciT130I CCWGG 3 cut(s) 502, 517, 730
BcoDI GTCTC 4 cut(s) 131, 133, 473, 543
BfaI CTAG 1 cut(s) 461
BfmI CTRYAG 1 cut(s) 10
BglII AGATCT 2 cut(s) 89, 222
BisI GCNGC 1 cut(s) 971
BlsI GCNGC 1 cut(s) 972
Bme1390I CCNGG 3 cut(s) 502, 517, 730
Bme18I GGWCC 1 cut(s) 513
BmgT120I GGNCC 1 cut(s) 513
BmiI GGNNCC 2 cut(s) 642, 778
BmrFI CCNGG 3 cut(s) 502, 517, 730
BpiI GAAGAC 1 cut(s) 614
BplI GAGNNNNNCTC 2 cut(s) 938, 970
BpmI CTGGAG 1 cut(s) 115
Bpu10I CCTNAGC 1 cut(s) 1131
BpuEI CTTGAG 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 936
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 6 cut(s) 501, 516, 667, 715, 786, 990
BsaXI ACNNNNNCTCC 2 cut(s) 399, 429
Bsc4I CCNNNNNNNGG 4 cut(s) 325, 522, 668, 973
Bse1I ACTGG 3 cut(s) 487, 1054, 1155
Bse3DI GCAATG 1 cut(s) 780
Bse8I GATNNNNATC 1 cut(s) 936
BseBI CCWGG 3 cut(s) 502, 517, 730
BseDI CCNNGG 6 cut(s) 501, 516, 667, 715, 786, 990
BseGI GGATG 4 cut(s) 42, 481, 796, 1151
BseJI GATNNNNATC 1 cut(s) 936
BseLI CCNNNNNNNGG 4 cut(s) 325, 522, 668, 973
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 5 cut(s) 132, 312, 779, 969, 1145
BseNI ACTGG 3 cut(s) 487, 1054, 1155
BseRI GAGGAG 3 cut(s) 254, 1055, 1136
BseSI GKGCMC 1 cut(s) 270
BseYI CCCAGC 1 cut(s) 966
Bsh1236I CGCG 1 cut(s) 174
BshFI GGCC 2 cut(s) 110, 989
BshNI GGYRCC 1 cut(s) 776
BsiHKAI GWGCWC 3 cut(s) 270, 1078, 1132
BslFI GGGAC 2 cut(s) 61, 764
BslI CCNNNNNNNGG 4 cut(s) 325, 522, 668, 973
BsmAI GTCTC 4 cut(s) 131, 133, 473, 543
BsmBI CGTCTC 1 cut(s) 133
BsmFI GGGAC 2 cut(s) 61, 764
BsnI GGCC 2 cut(s) 110, 989
Bso31I GGTCTC 1 cut(s) 543
Bsp1286I GDGCHC 3 cut(s) 270, 1078, 1132
Bsp143I GATC 4 cut(s) 89, 222, 629, 640
Bsp19I CCATGG 1 cut(s) 715
BspACI CCGC 2 cut(s) 79, 970
BspANI GGCC 2 cut(s) 110, 989
BspCNI CTCAG 5 cut(s) 133, 313, 778, 968, 1144
BspFNI CGCG 1 cut(s) 174
BspHI TCATGA 1 cut(s) 802
BspLI GGNNCC 2 cut(s) 642, 778
BspMAI CTGCAG 1 cut(s) 14
BspPI GGATC 3 cut(s) 635, 637, 648
BspQI GCTCTTC 2 cut(s) 435, 1132
BspT107I GGYRCC 1 cut(s) 776
BspTNI GGTCTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 780
BsrI ACTGG 3 cut(s) 487, 1054, 1155
BssECI CCNNGG 6 cut(s) 501, 516, 667, 715, 786, 990
BssMI GATC 4 cut(s) 89, 222, 629, 640
BssT1I CCWWGG 3 cut(s) 667, 715, 990
Bst2UI CCWGG 3 cut(s) 502, 517, 730
Bst4CI ACNGT 1 cut(s) 862
Bst6I CTCTTC 3 cut(s) 435, 528, 1132
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 6 cut(s) 14, 297, 490, 735, 906, 1172
BstDEI CTNAG 7 cut(s) 72, 141, 235, 321, 765, 955, 1131
BstDSI CCRYGG 1 cut(s) 715
BstF5I GGATG 4 cut(s) 42, 481, 796, 1151
BstFNI CGCG 1 cut(s) 174
BstKTI GATC 4 cut(s) 92, 225, 632, 643
BstMAI GTCTC 4 cut(s) 131, 133, 473, 543
BstMBI GATC 4 cut(s) 89, 222, 629, 640
BstMWI GCNNNNNNNGC 3 cut(s) 274, 527, 734
BstNI CCWGG 3 cut(s) 502, 517, 730
BstSCI CCNGG 3 cut(s) 500, 515, 728
BstSFI CTRYAG 1 cut(s) 10
BstSLI GKGCMC 1 cut(s) 270
BstUI CGCG 1 cut(s) 174
BstV2I GAAGAC 1 cut(s) 614
BstX2I RGATCY 3 cut(s) 89, 222, 640
BstXI CCANNNNNNTGG 1 cut(s) 1170
BstYI RGATCY 3 cut(s) 89, 222, 640
BsuRI GGCC 2 cut(s) 110, 989
BtgI CCRYGG 1 cut(s) 715
BtsCI GGATG 4 cut(s) 42, 481, 796, 1151
BtsIMutI CAGTG 2 cut(s) 858, 1162
Cac8I GCNNGC 6 cut(s) 14, 297, 490, 735, 906, 1172
CaiI CAGNNNCTG 1 cut(s) 973
CciI TCATGA 1 cut(s) 802
Cfr13I GGNCC 1 cut(s) 513
CspCI CAANNNNNGTGG 2 cut(s) 807, 842
DdeI CTNAG 7 cut(s) 72, 141, 235, 321, 765, 955, 1131
DpnI GATC 4 cut(s) 91, 224, 631, 642
DpnII GATC 4 cut(s) 89, 222, 629, 640
EaeI YGGCCR 1 cut(s) 987
Eam1104I CTCTTC 3 cut(s) 435, 528, 1132
EarI CTCTTC 3 cut(s) 435, 528, 1132
Ecl136II GAGCTC 1 cut(s) 1130
Eco130I CCWWGG 3 cut(s) 667, 715, 990
Eco24I GRGCYC 1 cut(s) 1132
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 1 cut(s) 513
Eco53kI GAGCTC 1 cut(s) 1130
Eco57I CTGAAG 1 cut(s) 552
EcoICRI GAGCTC 1 cut(s) 1130
EcoRII CCWGG 3 cut(s) 500, 515, 728
EcoT14I CCWWGG 3 cut(s) 667, 715, 990
EcoT38I GRGCYC 1 cut(s) 1132
ErhI CCWWGG 3 cut(s) 667, 715, 990
Esp3I CGTCTC 1 cut(s) 133
FalI AAGNNNNNCTT 4 cut(s) 294, 326, 414, 446
FaqI GGGAC 2 cut(s) 61, 764
FauI CCCGC 1 cut(s) 86
FblI GTMKAC 1 cut(s) 588
Fnu4HI GCNGC 1 cut(s) 971
FokI GGATG 4 cut(s) 29, 488, 803, 1138
FriOI GRGCYC 1 cut(s) 1132
Fsp4HI GCNGC 1 cut(s) 971
FspBI CTAG 1 cut(s) 461
GluI GCNGC 1 cut(s) 971
GsaI CCCAGC 1 cut(s) 970
GsuI CTGGAG 1 cut(s) 115
HaeIII GGCC 2 cut(s) 110, 989
HincII GTYRAC 1 cut(s) 1047
HindII GTYRAC 1 cut(s) 1047
HinfI GANTC 4 cut(s) 176, 193, 323, 333
HphI GGTGA 2 cut(s) 487, 1073
Hpy166II GTNNAC 3 cut(s) 268, 589, 1047
Hpy188I TCNGA 4 cut(s) 89, 328, 768, 790
Hpy8I GTNNAC 3 cut(s) 268, 589, 1047
HpyAV CCTTC 4 cut(s) 34, 563, 715, 1107
HpyCH4III ACNGT 1 cut(s) 862
HpyCH4IV ACGT 1 cut(s) 799
HpyCH4V TGCA 3 cut(s) 12, 268, 488
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 527, 734
HpyF3I CTNAG 7 cut(s) 72, 141, 235, 321, 765, 955, 1131
HpySE526I ACGT 1 cut(s) 799
Kzo9I GATC 4 cut(s) 89, 222, 629, 640
LguI GCTCTTC 2 cut(s) 435, 1132
MaeI CTAG 1 cut(s) 461
MaeII ACGT 1 cut(s) 799
MaeIII GTNAC 3 cut(s) 177, 190, 415
MalI GATC 4 cut(s) 91, 224, 631, 642
MboI GATC 4 cut(s) 89, 222, 629, 640
MflI RGATCY 3 cut(s) 89, 222, 640
MhlI GDGCHC 3 cut(s) 270, 1078, 1132
MluCI AATT 8 cut(s) 82, 161, 375, 612, 758, 949, 1107, 1191
MlyI GAGTC 3 cut(s) 185, 187, 332
MmeI TCCRAC 4 cut(s) 306, 385, 458, 1098
MroXI GAANNNNTTC 1 cut(s) 429
MseI TTAA 2 cut(s) 453, 1198
MslI CAYNNNNRTG 2 cut(s) 188, 263
MspA1I CMGCKG 3 cut(s) 959, 970, 1170
MspR9I CCNGG 3 cut(s) 502, 517, 730
MvaI CCWGG 3 cut(s) 502, 517, 730
MvnI CGCG 1 cut(s) 174
MwoI GCNNNNNNNGC 3 cut(s) 274, 527, 734
NcoI CCATGG 1 cut(s) 715
NdeII GATC 4 cut(s) 89, 222, 629, 640
NlaIV GGNNCC 2 cut(s) 642, 778
NmuCI GTSAC 3 cut(s) 177, 190, 415
PagI TCATGA 1 cut(s) 802
PciSI GCTCTTC 2 cut(s) 435, 1132
PdmI GAANNNNTTC 1 cut(s) 429
PfeI GAWTC 1 cut(s) 333
PflMI CCANNNNNTGG 2 cut(s) 522, 973
PkrI GCNGC 1 cut(s) 972
PleI GAGTC 3 cut(s) 184, 187, 331
PpsI GAGTC 3 cut(s) 184, 187, 331
PsiI TTATAA 1 cut(s) 936
Psp124BI GAGCTC 1 cut(s) 1132
Psp6I CCWGG 3 cut(s) 500, 515, 728
PspFI CCCAGC 1 cut(s) 966
PspGI CCWGG 3 cut(s) 500, 515, 728
PspN4I GGNNCC 2 cut(s) 642, 778
PspPI GGNCC 1 cut(s) 513
PsrI GAACNNNNNNTAC 2 cut(s) 647, 679
PstI CTGCAG 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 973
PsuI RGATCY 3 cut(s) 89, 222, 640
PvuII CAGCTG 2 cut(s) 959, 1170
RseI CAYNNNNRTG 2 cut(s) 188, 263
SacI GAGCTC 1 cut(s) 1132
SapI GCTCTTC 2 cut(s) 435, 1132
SaqAI TTAA 2 cut(s) 453, 1198
SatI GCNGC 1 cut(s) 971
Sau3AI GATC 4 cut(s) 89, 222, 629, 640
Sau96I GGNCC 1 cut(s) 513
SchI GAGTC 3 cut(s) 185, 187, 332
ScrFI CCNGG 3 cut(s) 502, 517, 730
SduI GDGCHC 3 cut(s) 270, 1078, 1132
SfcI CTRYAG 1 cut(s) 10
SinI GGWCC 1 cut(s) 513
SmiMI CAYNNNNRTG 2 cut(s) 188, 263
SmlI CTYRAG 1 cut(s) 218
SmoI CTYRAG 1 cut(s) 218
Sse9I AATT 8 cut(s) 82, 161, 375, 612, 758, 949, 1107, 1191
SsiI CCGC 2 cut(s) 79, 970
SspMI CTAG 1 cut(s) 461
SstI GAGCTC 1 cut(s) 1132
StyD4I CCNGG 3 cut(s) 500, 515, 728
StyI CCWWGG 3 cut(s) 667, 715, 990
TaaI ACNGT 1 cut(s) 862
TaiI ACGT 1 cut(s) 802
TaqI TCGA 2 cut(s) 603, 945
TasI AATT 8 cut(s) 82, 161, 375, 612, 758, 949, 1107, 1191
TauI GCSGC 1 cut(s) 973
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 2 cut(s) 453, 1198
Tru9I TTAA 2 cut(s) 453, 1198
TscAI CASTG 2 cut(s) 865, 1162
TseFI GTSAC 3 cut(s) 177, 190, 415
Tsp45I GTSAC 3 cut(s) 177, 190, 415
TspGWI ACGGA 2 cut(s) 115, 665
TspRI CASTG 2 cut(s) 865, 1162
Van91I CCANNNNNTGG 2 cut(s) 522, 973
VneI GTGCAC 1 cut(s) 266
VpaK11BI GGWCC 1 cut(s) 513
XapI RAATTY 2 cut(s) 375, 949
XbaI TCTAGA 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 588
XmnI GAANNNNTTC 1 cut(s) 429
XspI CTAG 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.