Rorug03G0001400

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0013926
Physical Location & Seq
Forward (+)
161153 .. 162047
895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0001400.1

Sequence Viewer

Length: 579 bp
ATGGGTATAGGGATGAACTCGAACACGAACCCATCAGTGTCTCCATCCCACTACCACACCCACAAGGTGTTCCTTTTGTGCAACTACATACTCTTGGGTGCAGCCTCCAGTTGCATCTTCCTCACCCTCTCTCTGCGCCTCCTCCCCTCTGTCTGTGGCTTCTTCGTCATCCTCCTCCACATATTCACCATCGCCGGGGCCGTCTCTGGATGCGCCGCCGCCTCAGCAGGGACAGGAAAGTGGTACGGAGCCCACATGGTGGCCACAGTACTCACAGCAATATTCCAAGGCTCAGTATCGGTGCTAATCTTCACCAGAACCGGTGACTTTCTTGGGGAGCTCAAGTCGTACGTGAGGGAAGAGGATGCCTCTGTTATTCTCAAATTGGGCGGTGGCCTCAGTATTTTGATCTTTTGCTTGGAGTGGGTGGTCTTGACCCTTGCATTTTTCTTGAAGTACTATGCCTCTGTTGAAGGTGATCATATTCAGCTTGGTGCTAATTCTAGAGCTGCTATGAGGAGTTCCAAGGTGCAACAAGAGGAGGATTTGAAGGACTGGCCATGGCCCTTCCAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

192

Amino Acids

20.84

Weight (kDa)

6.99

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013926)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05327
fragaria_vesca FvH4_6g05780
prunus_persica Prupe.6G326500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454701
rosa_laevigata RLG00000025423
rosa_multiflora Rmu_sc0001792.1_g000026 Rmu_sc0003140.1_g000003
rosa_roxburghii Rroxscaffold_6G00424850
rosa_rugosa Rorug03G0001300.1 Rorug03G0001400 Rorug03G0001500 Rorug03G0001600
rosa_samantha Rh3AG061200 Rh3BG063000 Rh3CG061900 Rh3DG062800
rosa_wichuraiana Rw3G004780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 259
AciI CCGC 3 cut(s) 216, 219, 390
AcoI YGGCCR 2 cut(s) 261, 557
AdeI CACNNNGTG 2 cut(s) 67, 259
AfaI GTAC 4 cut(s) 245, 270, 350, 458
AfiI CCNNNNNNNGG 3 cut(s) 195, 228, 259
AgeI ACCGGT 1 cut(s) 320
AgsI TTSAA 3 cut(s) 454, 473, 550
AluBI AGCT 3 cut(s) 340, 490, 509
AluI AGCT 3 cut(s) 340, 490, 509
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 2 cut(s) 45, 208
AoxI GGCC 5 cut(s) 198, 261, 394, 557, 563
ApeKI GCWGC 2 cut(s) 101, 509
AsiGI ACCGGT 1 cut(s) 320
AspLEI GCGC 2 cut(s) 138, 215
AspS9I GGNCC 2 cut(s) 198, 564
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 5 cut(s) 115, 178, 304, 335, 488
BalI TGGCCA 2 cut(s) 263, 559
BanII GRGCYC 2 cut(s) 253, 342
Bbv12I GWGCWC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 223
BbvI GCAGC 2 cut(s) 113, 496
BccI CCATC 3 cut(s) 40, 52, 197
BceAI ACGGC 1 cut(s) 185
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 45, 208
BfaI CTAG 1 cut(s) 504
BisI GCNGC 4 cut(s) 102, 216, 219, 510
BlsI GCNGC 4 cut(s) 103, 217, 220, 511
BmcAI AGTACT 2 cut(s) 270, 458
Bme1390I CCNGG 1 cut(s) 196
BmgT120I GGNCC 2 cut(s) 198, 564
BmiI GGNNCC 2 cut(s) 199, 250
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 123, 200, 355
BplI GAGNNNNNCTC 2 cut(s) 353, 385
BpmI CTGGAG 1 cut(s) 91
Bpu10I CCTNAGC 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 352
BsaJI CCNNGG 4 cut(s) 195, 286, 525, 560
BsaWI WCCGGW 1 cut(s) 320
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 228, 259
Bse118I RCCGGY 1 cut(s) 320
Bse1I ACTGG 2 cut(s) 108, 560
BseDI CCNNGG 4 cut(s) 195, 286, 525, 560
BseGI GGATG 5 cut(s) 18, 44, 168, 215, 370
BseLI CCNNNNNNNGG 3 cut(s) 195, 228, 259
BseMII CTCAG 3 cut(s) 237, 306, 412
BseNI ACTGG 2 cut(s) 108, 560
BseRI GAGGAG 4 cut(s) 131, 164, 532, 554
BseXI GCAGC 2 cut(s) 113, 496
BsgI GTGCAG 1 cut(s) 120
BshFI GGCC 5 cut(s) 200, 263, 396, 559, 565
BshTI ACCGGT 1 cut(s) 320
BsiHKAI GWGCWC 1 cut(s) 342
BsiSI CCGG 2 cut(s) 195, 321
BsiWI CGTACG 1 cut(s) 348
BslFI GGGAC 1 cut(s) 244
BslI CCNNNNNNNGG 3 cut(s) 195, 228, 259
BsmAI GTCTC 2 cut(s) 45, 208
BsmBI CGTCTC 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 244
BsnI GGCC 5 cut(s) 200, 263, 396, 559, 565
Bsp1286I GDGCHC 2 cut(s) 253, 342
Bsp143I GATC 2 cut(s) 408, 478
Bsp19I CCATGG 1 cut(s) 560
BspACI CCGC 3 cut(s) 216, 219, 390
BspANI GGCC 5 cut(s) 200, 263, 396, 559, 565
BspCNI CTCAG 3 cut(s) 236, 305, 411
BspLI GGNNCC 2 cut(s) 199, 250
BsrFI RCCGGY 1 cut(s) 320
BsrI ACTGG 2 cut(s) 108, 560
BssAI RCCGGY 1 cut(s) 320
BssECI CCNNGG 4 cut(s) 195, 286, 525, 560
BssMI GATC 2 cut(s) 408, 478
BssT1I CCWWGG 3 cut(s) 286, 525, 560
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 354
BstBAI YACGTR 1 cut(s) 352
BstDEI CTNAG 3 cut(s) 223, 292, 398
BstDSI CCRYGG 1 cut(s) 560
BstF5I GGATG 5 cut(s) 18, 44, 168, 215, 370
BstHHI GCGC 2 cut(s) 138, 215
BstKTI GATC 2 cut(s) 411, 481
BstMAI GTCTC 2 cut(s) 45, 208
BstMBI GATC 2 cut(s) 408, 478
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 2 cut(s) 113, 496
BsuRI GGCC 5 cut(s) 200, 263, 396, 559, 565
BtgI CCRYGG 1 cut(s) 560
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 5 cut(s) 18, 44, 168, 215, 370
BtsIMutI CAGTG 1 cut(s) 42
CfoI GCGC 2 cut(s) 138, 215
Cfr10I RCCGGY 1 cut(s) 320
Cfr13I GGNCC 2 cut(s) 198, 564
Csp6I GTAC 4 cut(s) 244, 269, 349, 457
CspAI ACCGGT 1 cut(s) 320
CviAII CATG 2 cut(s) 256, 561
CviQI GTAC 4 cut(s) 244, 269, 349, 457
DdeI CTNAG 3 cut(s) 223, 292, 398
DpnI GATC 2 cut(s) 410, 480
DpnII GATC 2 cut(s) 408, 478
DraIII CACNNNGTG 2 cut(s) 67, 259
EaeI YGGCCR 2 cut(s) 261, 557
Eam1104I CTCTTC 1 cut(s) 354
EarI CTCTTC 1 cut(s) 354
Ecl136II GAGCTC 1 cut(s) 340
Eco130I CCWWGG 3 cut(s) 286, 525, 560
Eco24I GRGCYC 2 cut(s) 253, 342
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoT14I CCWWGG 3 cut(s) 286, 525, 560
EcoT38I GRGCYC 2 cut(s) 253, 342
ErhI CCWWGG 3 cut(s) 286, 525, 560
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 2 cut(s) 259, 564
FaiI YATR 8 cut(s) 8, 89, 182, 257, 462, 483, 515, 562
FaqI GGGAC 1 cut(s) 244
FatI CATG 2 cut(s) 255, 560
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 4 cut(s) 102, 216, 219, 510
FokI GGATG 5 cut(s) 25, 31, 155, 222, 377
FriOI GRGCYC 2 cut(s) 253, 342
Fsp4HI GCNGC 4 cut(s) 102, 216, 219, 510
FspBI CTAG 1 cut(s) 504
GlaI GCGC 2 cut(s) 137, 214
GluI GCNGC 4 cut(s) 102, 216, 219, 510
GsuI CTGGAG 1 cut(s) 91
HaeIII GGCC 5 cut(s) 200, 263, 396, 559, 565
HapII CCGG 2 cut(s) 195, 321
HhaI GCGC 2 cut(s) 138, 215
Hin1II CATG 2 cut(s) 259, 564
Hin6I GCGC 2 cut(s) 136, 213
HinP1I GCGC 2 cut(s) 136, 213
HpaII CCGG 2 cut(s) 195, 321
HphI GGTGA 5 cut(s) 115, 178, 304, 335, 488
Hpy188III TCNNGA 4 cut(s) 207, 433, 451, 504
HpyAV CCTTC 3 cut(s) 467, 544, 577
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4IV ACGT 1 cut(s) 351
HpyCH4V TGCA 5 cut(s) 81, 101, 114, 443, 532
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 3 cut(s) 223, 292, 398
HpySE526I ACGT 1 cut(s) 351
Hsp92II CATG 2 cut(s) 259, 564
HspAI GCGC 2 cut(s) 136, 213
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 2 cut(s) 408, 478
LmnI GCTCC 2 cut(s) 248, 337
LpnPI CCDG 8 cut(s) 121, 192, 208, 213, 219, 328, 334, 541
Lsp1109I GCAGC 2 cut(s) 113, 496
LweI GCATC 3 cut(s) 123, 200, 355
MaeI CTAG 1 cut(s) 504
MaeII ACGT 1 cut(s) 351
MaeIII GTNAC 1 cut(s) 323
MalI GATC 2 cut(s) 410, 480
MboI GATC 2 cut(s) 408, 478
MboII GAAGA 4 cut(s) 109, 154, 301, 371
MhlI GDGCHC 2 cut(s) 253, 342
MlsI TGGCCA 2 cut(s) 263, 559
MluCI AATT 2 cut(s) 383, 499
MluNI TGGCCA 2 cut(s) 263, 559
Mox20I TGGCCA 2 cut(s) 263, 559
MscI TGGCCA 2 cut(s) 263, 559
Msp20I TGGCCA 2 cut(s) 263, 559
MspI CCGG 2 cut(s) 195, 321
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 1 cut(s) 224
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 560
NdeII GATC 2 cut(s) 408, 478
NlaIII CATG 2 cut(s) 259, 564
NlaIV GGNNCC 2 cut(s) 199, 250
NmuCI GTSAC 1 cut(s) 323
PcsI WCGNNNNNNNCGW 1 cut(s) 198
Pfl23II CGTACG 1 cut(s) 348
PflMI CCANNNNNTGG 1 cut(s) 259
PinAI ACCGGT 1 cut(s) 320
PkrI GCNGC 4 cut(s) 103, 217, 220, 511
Ppu21I YACGTR 1 cut(s) 352
Psp124BI GAGCTC 1 cut(s) 342
PspLI CGTACG 1 cut(s) 348
PspN4I GGNNCC 2 cut(s) 199, 250
PspPI GGNCC 2 cut(s) 198, 564
RsaI GTAC 4 cut(s) 245, 270, 350, 458
RsaNI GTAC 4 cut(s) 244, 269, 349, 457
SacI GAGCTC 1 cut(s) 342
SatI GCNGC 4 cut(s) 102, 216, 219, 510
Sau3AI GATC 2 cut(s) 408, 478
Sau96I GGNCC 2 cut(s) 198, 564
ScaI AGTACT 2 cut(s) 270, 458
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 2 cut(s) 253, 342
SetI ASST 7 cut(s) 69, 342, 354, 478, 492, 511, 531
SfaNI GCATC 3 cut(s) 123, 200, 355
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 383, 499
SsiI CCGC 3 cut(s) 216, 219, 390
SspI AATATT 1 cut(s) 282
SspMI CTAG 1 cut(s) 504
SstI GAGCTC 1 cut(s) 342
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 3 cut(s) 286, 525, 560
TaaI ACNGT 1 cut(s) 268
TaiI ACGT 1 cut(s) 354
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 383, 499
TatI WGTACW 2 cut(s) 268, 456
TauI GCSGC 2 cut(s) 218, 221
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 2 cut(s) 101, 509
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 1 cut(s) 261
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 259
XbaI TCTAGA 1 cut(s) 503
XspI CTAG 1 cut(s) 504
ZrmI AGTACT 2 cut(s) 270, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.