AT3G05550

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017093
Physical Location & Seq
Forward (+)
1612690 .. 1614027
1338 bp
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UTR
Exon/CDS
Intron
AT3G05550.1

Sequence Viewer

Length: 294 bp
ATGGTGGAATCAAAGACCAAATTTGAAGAAATCAGAAAATGGGTCTCCGATCACAAACTTCGTACCGTCGGTTGTTTATGGCTAAGTGGTATTACCGGTTCTATCGCCTATAACTGGTCCCAACCTGCCATGAAAACCAGTGTCAAGATCATCCACGCCAGGTTGCACGCTCAGGCGCTGACTTTAGCTGCTTTGGCTGGAGCAGCCGTGGTGGAGTACTATGACCACAAAACTGAAGCTACCAACCGCTATCCGAAGTTTCTGCCACCGGAAAATTTATCTCACAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

97

Amino Acids

10.97

Weight (kDa)

9.34

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 18 - 67 3.7e-13 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05550
fragaria_vesca FvH4_6g06640
malus_domestica MD04G1199400.v1.1 MD12G1212200.v1.1
prunus_persica Prupe.6G319900_v2.0.a1
pyrus_communis pycom04g17610
rosa_chinensis RchiOBHm_Chr3g0455841
rosa_multiflora Rmu_ssc0000046.1_g000011
rosa_roxburghii Rroxscaffold_6G00423410 Rroxscaffold_6G00423900
rosa_rugosa Rorug03G0010100
rosa_wichuraiana Rw3G005680 Rw3G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AciI CCGC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 20, 274
AcuI CTGAAG 1 cut(s) 255
AfaI GTAC 2 cut(s) 64, 218
AfiI CCNNNNNNNGG 1 cut(s) 114
AgeI ACCGGT 1 cut(s) 95
AgsI TTSAA 1 cut(s) 26
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 2 cut(s) 188, 239
AluI AGCT 2 cut(s) 188, 239
Alw26I GTCTC 1 cut(s) 49
AlwNI CAGNNNCTG 1 cut(s) 178
ApeKI GCWGC 2 cut(s) 188, 203
ApoI RAATTY 2 cut(s) 20, 274
AsiGI ACCGGT 1 cut(s) 95
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 117
AvaII GGWCC 1 cut(s) 117
BbvI GCAGC 2 cut(s) 175, 215
BceAI ACGGC 1 cut(s) 191
BcgI CGANNNNNNTGC 2 cut(s) 244, 278
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 49
BfoI RGCGCY 1 cut(s) 179
BfuAI ACCTGC 1 cut(s) 133
BisI GCNGC 2 cut(s) 189, 204
BlsI GCNGC 2 cut(s) 190, 205
BmcAI AGTACT 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 160
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 49
BsaJI CCNNGG 1 cut(s) 207
BsaWI WCCGGW 2 cut(s) 95, 268
BsaXI ACNNNNNCTCC 2 cut(s) 192, 222
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse118I RCCGGY 1 cut(s) 95
Bse1I ACTGG 2 cut(s) 119, 138
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 207
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 185
BseNI ACTGG 2 cut(s) 119, 138
BseXI GCAGC 2 cut(s) 175, 215
BshTI ACCGGT 1 cut(s) 95
BsiSI CCGG 2 cut(s) 96, 269
BslFI GGGAC 1 cut(s) 103
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 49
BsmFI GGGAC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 49
Bsp143I GATC 2 cut(s) 49, 147
BspACI CCGC 1 cut(s) 247
BspCNI CTCAG 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 119
BspMI ACCTGC 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 95
BsrI ACTGG 2 cut(s) 119, 138
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 207
BssMI GATC 2 cut(s) 49, 147
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 67
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 2 cut(s) 83, 171
BstDSI CCRYGG 1 cut(s) 207
BstF5I GGATG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 179
BstHHI GCGC 1 cut(s) 178
BstKTI GATC 2 cut(s) 52, 150
BstMAI GTCTC 1 cut(s) 49
BstMBI GATC 2 cut(s) 49, 147
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 160
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 2 cut(s) 175, 215
BtgI CCRYGG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 145
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 178
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 1 cut(s) 117
Csp6I GTAC 2 cut(s) 63, 217
CspAI ACCGGT 1 cut(s) 95
CviAII CATG 1 cut(s) 130
CviJI RGCY 5 cut(s) 82, 188, 197, 206, 239
CviKI_1 RGCY 5 cut(s) 82, 188, 197, 206, 239
CviQI GTAC 2 cut(s) 63, 217
DdeI CTNAG 2 cut(s) 83, 171
DpnI GATC 2 cut(s) 51, 149
DpnII GATC 2 cut(s) 49, 147
Eco31I GGTCTC 1 cut(s) 49
Eco47I GGWCC 1 cut(s) 117
Eco57I CTGAAG 1 cut(s) 255
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 1 cut(s) 133
FaiI YATR 4 cut(s) 79, 111, 131, 222
FaqI GGGAC 1 cut(s) 103
FatI CATG 1 cut(s) 129
Fnu4HI GCNGC 2 cut(s) 189, 204
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 189, 204
GlaI GCGC 1 cut(s) 177
GluI GCNGC 2 cut(s) 189, 204
GsuI CTGGAG 1 cut(s) 219
HaeII RGCGCY 1 cut(s) 179
HapII CCGG 2 cut(s) 96, 269
HhaI GCGC 1 cut(s) 178
Hin1II CATG 1 cut(s) 133
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 96, 269
Hpy188I TCNGA 3 cut(s) 35, 49, 255
Hpy188III TCNNGA 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 71
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 2 cut(s) 83, 171
Hsp92II CATG 1 cut(s) 133
HspAI GCGC 1 cut(s) 176
Kzo9I GATC 2 cut(s) 49, 147
LmnI GCTCC 1 cut(s) 200
LpnPI CCDG 9 cut(s) 100, 109, 138, 145, 151, 158, 172, 183, 282
Lsp1109I GCAGC 2 cut(s) 175, 215
MalI GATC 2 cut(s) 51, 149
MboI GATC 2 cut(s) 49, 147
MboII GAAGA 1 cut(s) 38
MluCI AATT 2 cut(s) 20, 274
MspI CCGG 2 cut(s) 96, 269
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NdeII GATC 2 cut(s) 49, 147
NlaIII CATG 1 cut(s) 133
NlaIV GGNNCC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 8
PinAI ACCGGT 1 cut(s) 95
PkrI GCNGC 2 cut(s) 190, 205
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 119
PspPI GGNCC 1 cut(s) 117
PsrI GAACNNNNNNTAC 2 cut(s) 82, 114
PstNI CAGNNNCTG 1 cut(s) 178
RsaI GTAC 2 cut(s) 64, 218
RsaNI GTAC 2 cut(s) 63, 217
SatI GCNGC 2 cut(s) 189, 204
Sau3AI GATC 2 cut(s) 49, 147
Sau96I GGNCC 1 cut(s) 117
ScaI AGTACT 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 160
SetI ASST 4 cut(s) 127, 164, 190, 241
SinI GGWCC 1 cut(s) 117
Sse9I AATT 2 cut(s) 20, 274
SsiI CCGC 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 67
TasI AATT 2 cut(s) 20, 274
TatI WGTACW 1 cut(s) 216
TfiI GAWTC 1 cut(s) 8
TscAI CASTG 1 cut(s) 145
TseI GCWGC 2 cut(s) 188, 203
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 117
XapI RAATTY 2 cut(s) 20, 274
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.