MD12G1212200.v1.1

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0017093
Physical Location & Seq
Reverse (-)
29106339 .. 29108867
2529 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1212200.v1.1.491

Sequence Viewer

Length: 300 bp
ATGTCGGAATCCAAGAGCAAGGTCGATTCTCTCAGGGAATGGGTTGTCGAGCACAAGCTTCGAGCTGTTGGTCTTCTATGGCTCAGTGGAATTACGGGTTCGATAGCTTATAACTGGTCTCAGCCCGGCATGAAGACCAGTGTGAGGATCATCCACGCCAGGTTGCATGCACAGGCTCTAACGCTCGCCGCATTAGCTGGTGCAGCAGTGGTGGAGTACTATGACCACAAAACTGGAGCAAAGCACGACAAATACGCCAAGTACTTCCCAATTGAGGACTTTAACAAGGATTCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

100

Amino Acids

11.09

Weight (kDa)

9.22

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 17 - 67 6.6e-12 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05550
fragaria_vesca FvH4_6g06640
malus_domestica MD04G1199400.v1.1 MD12G1212200.v1.1
prunus_persica Prupe.6G319900_v2.0.a1
pyrus_communis pycom04g17610
rosa_chinensis RchiOBHm_Chr3g0455841
rosa_multiflora Rmu_ssc0000046.1_g000011
rosa_roxburghii Rroxscaffold_6G00423410 Rroxscaffold_6G00423900
rosa_rugosa Rorug03G0010100
rosa_wichuraiana Rw3G005680 Rw3G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 111
AciI CCGC 1 cut(s) 189
AclWI GGATC 1 cut(s) 155
AfaI GTAC 2 cut(s) 218, 263
AfiI CCNNNNNNNGG 2 cut(s) 144, 274
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 4 cut(s) 58, 65, 107, 197
AluI AGCT 4 cut(s) 58, 65, 107, 197
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 1 cut(s) 155
ApeKI GCWGC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 65, 140
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 215
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 1 cut(s) 126
BcoDI GTCTC 1 cut(s) 123
BisI GCNGC 2 cut(s) 189, 204
BlsI GCNGC 2 cut(s) 190, 205
BmcAI AGTACT 2 cut(s) 218, 263
Bme1390I CCNGG 2 cut(s) 126, 160
BmrFI CCNGG 2 cut(s) 126, 160
BpiI GAAGAC 2 cut(s) 65, 140
BpmI CTGGAG 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 126
BsaI GGTCTC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 274
Bse1I ACTGG 3 cut(s) 119, 138, 238
BseBI CCWGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 2 cut(s) 144, 274
BseMII CTCAG 3 cut(s) 46, 97, 134
BseNI ACTGG 3 cut(s) 119, 138, 238
BseXI GCAGC 1 cut(s) 215
BsgI GTGCAG 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 144, 274
BsmAI GTCTC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 1 cut(s) 147
BspACI CCGC 1 cut(s) 189
BspCNI CTCAG 3 cut(s) 45, 96, 133
BspPI GGATC 1 cut(s) 155
BspTNI GGTCTC 1 cut(s) 123
BsrI ACTGG 3 cut(s) 119, 138, 238
BssMI GATC 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 160
BstC8I GCNNGC 2 cut(s) 168, 186
BstDEI CTNAG 3 cut(s) 32, 83, 120
BstF5I GGATG 1 cut(s) 150
BstKTI GATC 1 cut(s) 150
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 170
BstSCI CCNGG 2 cut(s) 124, 158
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 2 cut(s) 65, 140
BstXI CCANNNNNNTGG 1 cut(s) 233
BtsCI GGATG 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 91, 145, 213
Cac8I GCNNGC 2 cut(s) 168, 186
Csp6I GTAC 2 cut(s) 217, 262
CviAII CATG 2 cut(s) 130, 167
CviJI RGCY 7 cut(s) 58, 65, 82, 107, 124, 176, 197
CviKI_1 RGCY 7 cut(s) 58, 65, 82, 107, 124, 176, 197
CviQI GTAC 2 cut(s) 217, 262
DdeI CTNAG 3 cut(s) 32, 83, 120
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 133, 170
FaiI YATR 5 cut(s) 79, 111, 131, 168, 222
FatI CATG 2 cut(s) 129, 166
Fnu4HI GCNGC 2 cut(s) 189, 204
FokI GGATG 1 cut(s) 137
Fsp4HI GCNGC 2 cut(s) 189, 204
GluI GCNGC 2 cut(s) 189, 204
GsuI CTGGAG 1 cut(s) 255
HapII CCGG 1 cut(s) 126
Hin1II CATG 2 cut(s) 133, 170
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 3 cut(s) 8, 26, 290
HpaII CCGG 1 cut(s) 126
Hpy188I TCNGA 1 cut(s) 7
HpyCH4V TGCA 3 cut(s) 166, 170, 203
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 3 cut(s) 32, 83, 120
Hsp92II CATG 2 cut(s) 133, 170
Kzo9I GATC 1 cut(s) 147
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 9 cut(s) 19, 100, 139, 145, 151, 158, 172, 183, 219
Lsp1109I GCAGC 1 cut(s) 215
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MboII GAAGA 2 cut(s) 65, 145
MfeI CAATTG 2 cut(s) 270, 295
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 3 cut(s) 90, 270, 295
MnlI CCTC 2 cut(s) 138, 268
MseI TTAA 1 cut(s) 282
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 2 cut(s) 126, 160
MunI CAATTG 2 cut(s) 270, 295
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NciI CCSGG 1 cut(s) 126
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 133, 170
NspI RCATGY 1 cut(s) 170
PaeI GCATGC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 8, 26, 290
PkrI GCNGC 2 cut(s) 190, 205
PsiI TTATAA 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
RsaI GTAC 2 cut(s) 218, 263
RsaNI GTAC 2 cut(s) 217, 262
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 189, 204
Sau3AI GATC 1 cut(s) 147
ScaI AGTACT 2 cut(s) 218, 263
ScrFI CCNGG 2 cut(s) 126, 160
SduI GDGCHC 1 cut(s) 54
SetI ASST 6 cut(s) 24, 60, 67, 109, 164, 199
SphI GCATGC 1 cut(s) 170
Sse9I AATT 3 cut(s) 90, 270, 295
SsiI CCGC 1 cut(s) 189
StyD4I CCNGG 2 cut(s) 124, 158
TaqI TCGA 4 cut(s) 24, 48, 61, 101
TasI AATT 3 cut(s) 90, 270, 295
TatI WGTACW 2 cut(s) 216, 261
TauI GCSGC 1 cut(s) 191
TfiI GAWTC 3 cut(s) 8, 26, 290
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 3 cut(s) 91, 145, 213
TseI GCWGC 1 cut(s) 203
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 3 cut(s) 91, 145, 213
XceI RCATGY 1 cut(s) 170
ZrmI AGTACT 2 cut(s) 218, 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.