Rroxscaffold_6G00423410

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0017093
Physical Location & Seq
Forward (+)
44543886 .. 44546162
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00423410.1

Sequence Viewer

Length: 294 bp
ATGTCGGAACCTAAGACCAAGATCGAATCCCTAAGGGAATGGGTGGTCGAACATAAGCTCCGAGCTGTTGGGGCTCTGTGGCTTACTGGAATAGCCAGTTCGGTAGCTTACAACTGGTCAAGTCCCAAGAAATTTCAAGTGAAGATGATTCATGCCAGGTTGAATGCACAGGCTATCACGCTGGCTGCATTATTTGGTAGTGCTGTTGTTGAATACTATGACCATAAAACTGGTAAAAAGGCTGACAAATACGCCAAGTACATGCACATTGAGAACTTCCAAAGCAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

97

Amino Acids

11.06

Weight (kDa)

9.62

Isoelectric Point (pI)

65.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIG_1_N PF04588 17 - 66 7.6e-11 Hypoxia induced protein conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05550
fragaria_vesca FvH4_6g06640
malus_domestica MD04G1199400.v1.1 MD12G1212200.v1.1
prunus_persica Prupe.6G319900_v2.0.a1
pyrus_communis pycom04g17610
rosa_chinensis RchiOBHm_Chr3g0455841
rosa_multiflora Rmu_ssc0000046.1_g000011
rosa_roxburghii Rroxscaffold_6G00423410 Rroxscaffold_6G00423900
rosa_rugosa Rorug03G0010100
rosa_wichuraiana Rw3G005680 Rw3G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 131
AfaI GTAC 1 cut(s) 260
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 3 cut(s) 137, 163, 212
AjnI CCWGG 1 cut(s) 155
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
AluBI AGCT 3 cut(s) 58, 65, 107
AluI AGCT 3 cut(s) 58, 65, 107
ApeKI GCWGC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 131
AxyI CCTNAGG 1 cut(s) 32
BanII GRGCYC 1 cut(s) 76
BbvI GCAGC 1 cut(s) 172
BciT130I CCWGG 1 cut(s) 157
BisI GCNGC 1 cut(s) 186
BlsI GCNGC 1 cut(s) 187
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse1I ACTGG 4 cut(s) 91, 96, 119, 235
Bse21I CCTNAGG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 286
BseNI ACTGG 4 cut(s) 91, 96, 119, 235
BseXI GCAGC 1 cut(s) 172
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 286
BsmFI GGGAC 1 cut(s) 108
BsmI GAATGC 1 cut(s) 169
Bsp1286I GDGCHC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 21
BspLI GGNNCC 1 cut(s) 9
BsrI ACTGG 4 cut(s) 91, 96, 119, 235
BssMI GATC 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 12, 32
BstKTI GATC 1 cut(s) 24
BstMBI GATC 1 cut(s) 21
BstMWI GCNNNNNNNGC 1 cut(s) 71
BstNI CCWGG 1 cut(s) 157
BstNSI RCATGY 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 155
BstV1I GCAGC 1 cut(s) 172
BstXI CCANNNNNNTGG 1 cut(s) 230
Bsu36I CCTNAGG 1 cut(s) 32
Cac8I GCNNGC 1 cut(s) 183
Csp6I GTAC 1 cut(s) 259
CviAII CATG 2 cut(s) 152, 262
CviJI RGCY 9 cut(s) 58, 65, 74, 82, 95, 107, 173, 185, 242
CviKI_1 RGCY 9 cut(s) 58, 65, 74, 82, 95, 107, 173, 185, 242
CviQI GTAC 1 cut(s) 259
DdeI CTNAG 2 cut(s) 12, 32
DpnI GATC 1 cut(s) 23
DpnII GATC 1 cut(s) 21
Eco24I GRGCYC 1 cut(s) 76
Eco81I CCTNAGG 1 cut(s) 32
EcoRII CCWGG 1 cut(s) 155
EcoT38I GRGCYC 1 cut(s) 76
FaeI CATG 2 cut(s) 155, 265
FaiI YATR 5 cut(s) 54, 153, 219, 225, 263
FaqI GGGAC 1 cut(s) 108
FatI CATG 2 cut(s) 151, 261
Fnu4HI GCNGC 1 cut(s) 186
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 1 cut(s) 186
GluI GCNGC 1 cut(s) 186
Hin1II CATG 2 cut(s) 155, 265
HinfI GANTC 2 cut(s) 26, 148
Hpy188I TCNGA 2 cut(s) 7, 62
HpyCH4V TGCA 3 cut(s) 167, 188, 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 71
HpyF3I CTNAG 2 cut(s) 12, 32
Hsp92II CATG 2 cut(s) 155, 265
Kzo9I GATC 1 cut(s) 21
LmnI GCTCC 1 cut(s) 63
LpnPI CCDG 8 cut(s) 72, 100, 109, 142, 155, 167, 169, 216
Lsp1109I GCAGC 1 cut(s) 172
MalI GATC 1 cut(s) 23
MboI GATC 1 cut(s) 21
MboII GAAGA 1 cut(s) 154
MhlI GDGCHC 1 cut(s) 76
MluCI AATT 1 cut(s) 131
MseI TTAA 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 157
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 157
MwoI GCNNNNNNNGC 1 cut(s) 71
NdeII GATC 1 cut(s) 21
NlaIII CATG 2 cut(s) 155, 265
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 265
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 26, 148
PkrI GCNGC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 9
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 292
SatI GCNGC 1 cut(s) 186
Sau3AI GATC 1 cut(s) 21
ScrFI CCNGG 1 cut(s) 157
SduI GDGCHC 1 cut(s) 76
SetI ASST 5 cut(s) 13, 60, 67, 109, 161
Sse9I AATT 1 cut(s) 131
StyD4I CCNGG 1 cut(s) 155
TaqI TCGA 2 cut(s) 24, 48
TasI AATT 1 cut(s) 131
TatI WGTACW 1 cut(s) 258
TfiI GAWTC 2 cut(s) 26, 148
Tru1I TTAA 1 cut(s) 292
Tru9I TTAA 1 cut(s) 292
TseI GCWGC 1 cut(s) 185
TspDTI ATGAA 1 cut(s) 140
XapI RAATTY 1 cut(s) 131
XceI RCATGY 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.