Prupe.6G319900_v2.0.a1

Hypoxia induced protein conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0017093
Physical Location & Seq
Reverse (-)
28336542 .. 28338605
2064 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G319900.1

Sequence Viewer

Length: 297 bp
ATGTCGGAACCTAAGAGCACCGTCGATTCCATCAGGGAATGGGTTGTCGAGCATAAGCTTCGAGCTGTCGGGTGTCTATGGCTCAGTGGATTAGCGGGTTCAATAGCATACAACTGGTCTCAGCCGAACATGAAGACCAGTGTCAGGATCATTCACGCCAGGTTGCATGCACAGGGTCTGACGCTGGCTGCATTAGCCGGTGCGGCAGTGGTTGAATACTATGAGCACAAGTCTGGATCAAAGGCTGACAAATATGCGAAGTACTTCAACATTGAAAACTTCTCACACAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIG_1_N

Protein Analysis

99

Amino Acids

10.95

Weight (kDa)

9.1

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05550
fragaria_vesca FvH4_6g06640
malus_domestica MD04G1199400.v1.1 MD12G1212200.v1.1
prunus_persica Prupe.6G319900_v2.0.a1
pyrus_communis pycom04g17610
rosa_chinensis RchiOBHm_Chr3g0455841
rosa_multiflora Rmu_ssc0000046.1_g000011
rosa_roxburghii Rroxscaffold_6G00423410 Rroxscaffold_6G00423900
rosa_rugosa Rorug03G0010100
rosa_wichuraiana Rw3G005680 Rw3G006030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 95, 203
AclWI GGATC 2 cut(s) 155, 244
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 1 cut(s) 144
AgsI TTSAA 4 cut(s) 102, 215, 268, 275
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 2 cut(s) 58, 65
AluI AGCT 2 cut(s) 58, 65
Alw21I GWGCWC 2 cut(s) 20, 228
Alw26I GTCTC 1 cut(s) 123
AlwI GGATC 2 cut(s) 155, 244
AlwNI CAGNNNCTG 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 188
Asp700I GAANNNNTTC 1 cut(s) 263
BbsI GAAGAC 1 cut(s) 140
Bbv12I GWGCWC 2 cut(s) 20, 228
BbvI GCAGC 1 cut(s) 175
BccI CCATC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BciT130I CCWGG 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 123
BglI GCCNNNNNGGC 1 cut(s) 203
BisI GCNGC 2 cut(s) 189, 204
BlsI GCNGC 2 cut(s) 190, 205
BmcAI AGTACT 1 cut(s) 263
Bme1390I CCNGG 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 160
BoxI GACNNNNGTC 1 cut(s) 140
BpiI GAAGAC 1 cut(s) 140
BsaI GGTCTC 1 cut(s) 123
Bsc4I CCNNNNNNNGG 1 cut(s) 144
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 2 cut(s) 119, 138
BseBI CCWGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 144
BseMII CTCAG 2 cut(s) 97, 134
BseNI ACTGG 2 cut(s) 119, 138
BseXI GCAGC 1 cut(s) 175
BsiHKAI GWGCWC 2 cut(s) 20, 228
BsiSI CCGG 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 144
BsmAI GTCTC 1 cut(s) 123
Bso31I GGTCTC 1 cut(s) 123
Bsp1286I GDGCHC 2 cut(s) 20, 228
Bsp143I GATC 2 cut(s) 147, 236
BspACI CCGC 2 cut(s) 95, 203
BspCNI CTCAG 2 cut(s) 96, 133
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 2 cut(s) 155, 244
BspTNI GGTCTC 1 cut(s) 123
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 2 cut(s) 119, 138
BssAI RCCGGY 1 cut(s) 197
BssMI GATC 2 cut(s) 147, 236
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 1 cut(s) 22
BstC8I GCNNGC 2 cut(s) 168, 186
BstDEI CTNAG 3 cut(s) 12, 83, 120
BstKTI GATC 2 cut(s) 150, 239
BstMAI GTCTC 1 cut(s) 123
BstMBI GATC 2 cut(s) 147, 236
BstMWI GCNNNNNNNGC 2 cut(s) 194, 203
BstNI CCWGG 1 cut(s) 160
BstNSI RCATGY 1 cut(s) 170
BstPAI GACNNNNGTC 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 175
BstV2I GAAGAC 1 cut(s) 140
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 3 cut(s) 91, 145, 213
Cac8I GCNNGC 2 cut(s) 168, 186
CaiI CAGNNNCTG 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 1 cut(s) 190
Csp6I GTAC 1 cut(s) 262
CviAII CATG 2 cut(s) 130, 167
CviJI RGCY 7 cut(s) 58, 65, 82, 124, 188, 197, 245
CviKI_1 RGCY 7 cut(s) 58, 65, 82, 124, 188, 197, 245
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 3 cut(s) 12, 83, 120
DpnI GATC 2 cut(s) 149, 238
DpnII GATC 2 cut(s) 147, 236
Eco31I GGTCTC 1 cut(s) 123
EcoRII CCWGG 1 cut(s) 158
FaeI CATG 2 cut(s) 133, 170
FaiI YATR 7 cut(s) 54, 79, 109, 131, 168, 222, 255
FatI CATG 2 cut(s) 129, 166
FauI CCCGC 1 cut(s) 88
Fnu4HI GCNGC 2 cut(s) 189, 204
Fsp4HI GCNGC 2 cut(s) 189, 204
GluI GCNGC 2 cut(s) 189, 204
HapII CCGG 1 cut(s) 198
HgaI GACGC 1 cut(s) 190
Hin1II CATG 2 cut(s) 133, 170
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 1 cut(s) 26
HpaII CCGG 1 cut(s) 198
Hpy188I TCNGA 2 cut(s) 7, 180
Hpy188III TCNNGA 2 cut(s) 145, 234
Hpy99I CGWCG 1 cut(s) 26
HpyCH4III ACNGT 1 cut(s) 22
HpyCH4V TGCA 3 cut(s) 166, 170, 191
HpyF10VI GCNNNNNNNGC 2 cut(s) 194, 203
HpyF3I CTNAG 3 cut(s) 12, 83, 120
Hsp92II CATG 2 cut(s) 133, 170
Kzo9I GATC 2 cut(s) 147, 236
Lsp1109I GCAGC 1 cut(s) 175
MalI GATC 2 cut(s) 149, 238
MboI GATC 2 cut(s) 147, 236
MboII GAAGA 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 20, 228
MroXI GAANNNNTTC 1 cut(s) 263
MseI TTAA 1 cut(s) 295
MspI CCGG 1 cut(s) 198
MspR9I CCNGG 1 cut(s) 160
MvaI CCWGG 1 cut(s) 160
MwoI GCNNNNNNNGC 2 cut(s) 194, 203
NdeII GATC 2 cut(s) 147, 236
NlaIII CATG 2 cut(s) 133, 170
NlaIV GGNNCC 1 cut(s) 9
NspI RCATGY 1 cut(s) 170
PaeI GCATGC 1 cut(s) 170
PdmI GAANNNNTTC 1 cut(s) 263
PfeI GAWTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 190, 205
PshAI GACNNNNGTC 1 cut(s) 140
Psp6I CCWGG 1 cut(s) 158
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 1 cut(s) 9
PstNI CAGNNNCTG 1 cut(s) 178
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 1 cut(s) 295
SatI GCNGC 2 cut(s) 189, 204
Sau3AI GATC 2 cut(s) 147, 236
ScaI AGTACT 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 160
SduI GDGCHC 2 cut(s) 20, 228
SetI ASST 4 cut(s) 13, 60, 67, 164
SphI GCATGC 1 cut(s) 170
SsiI CCGC 2 cut(s) 95, 203
StyD4I CCNGG 1 cut(s) 158
TaaI ACNGT 1 cut(s) 22
TaqI TCGA 3 cut(s) 24, 48, 61
TatI WGTACW 1 cut(s) 261
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 295
Tru9I TTAA 1 cut(s) 295
TscAI CASTG 3 cut(s) 91, 145, 213
TseI GCWGC 1 cut(s) 188
TspDTI ATGAA 1 cut(s) 146
TspRI CASTG 3 cut(s) 91, 145, 213
XceI RCATGY 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 263
ZrmI AGTACT 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.