Rorug03G0010100

Hypoxia induced protein conserved region

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
737894 .. 741366
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0010100.1

Sequence Viewer

Length: 1338 bp
ATGGAAGAAATGAAGAGCAAGACCCCATTTCAAGCCGTCAAGTCCAGATTCACTGACCGGAAGAAGGAGAAGGAAATGAAGGCCATAGTAAGGGAGGATCCGGGTGGACCGGAGGTCCTCCGAGTAATGCGAGTGCCTGAACCGAAAATCACGGACGATGAAGTCCTCATACGCGTGGCAGCCACCGCGCTGAACGGGCCTGACATAATCGAGAGGAGAGTGACTTACCCGCCGTCCAAGACTCAAAGCCCCATCTTAGGTCTCGAATGTGCAGGAACCATCGAGAAAGTCGGTCAAAATGTCAAACGCTGGCAAGTCGGCCAACAGGTCTGTGCTGTTACCAATGGAGGGGCCTATGCTGAGAAGGTAGCTGTTCCACAGGGACTAGTTCTTCCTATCCCAGAGGGTATACCTTTGGCAGAAGCTGCTAGTTTTCCTCAGGTTGCATGCAGCGTTTGGGCGGCTCTTTTTACAGAAGATAAGCTATCTGTATCCTATTTTTTACCTGAGGATGCTAGTAAGACTAGTCTATCTGCTGGTGGATCACTTTTGATGGCATCCACTTTTTGGGCGGCGCTTACTATGAAGACTAGGGAAGCTAGCAGGAGTCCCCTATGCGCTGGTGATAGTCTCTTGGTGGTGGCATGCACTGTTTGGGTCATACTTGTACTGAAAGTTAAGCTGTGTTCTTGGTTTCCTGGTAGTAGGAGGCGGTTGAATGCTGGTGAAACTCTGATGGTTCATGGGGGCTCAGGTGGTATTGGAACATTTACAATTCAGTTAGCTAAACAGCGGGGAGTTAAAGTAATCGCCACAGCAGTTAGCGACGACCAGTTACGTGCTTGTGAGGAACTTGGAGCTGATGAGTGCATCGCTTTCAATCACAAGGACAAGGACAAGAACAAAGCAGAGAAATTAATTGAAATGGTTAAAAGTAAAACATATGGCAAAGGAGTGGATGTAATCTTGAGTAGCCTTGGGATCGAATATTTATTGGAAGAAAATGCCTGCTTGAAAGTTGATGGGATGCTTGTTAGCATCGTGGGCTGTTGTGCAGTACACTCAGATGATTGTAGTCGGCTTCCACAGCCAAAAAGTGAAAACTCTAAGGTTCAAGCACGCTACAACATCGGAGTGGCTGGCTTCCGGTATAGAAATACACAATACAAAGCGAGAATTGTGAGGGAGGTTGAGGAGCACGTGTGGCCTCTTATTGCAGCTGGTGGGGTGAAACCTGTTGTCCATCACCGTTTTCCATTCTCTGAAGCAACAGAAGCGCACCGGCTCATGGAAAGTGGTGAGCACGTAGGGAAGATCCTGCTTATCCCTGATAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

445

Amino Acids

48.53

Weight (kDa)

8.49

Isoelectric Point (pI)

44.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 52 - 135 1.5e-15 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 253 - 347 1.7e-16 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 285 - 441 4.2e-19 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 161
AccB7I CCANNNNNTGG 1 cut(s) 567
AccI GTMKAC 1 cut(s) 409
AccII CGCG 2 cut(s) 174, 188
AciI CCGC 6 cut(s) 186, 230, 461, 572, 712, 793
AclWI GGATC 5 cut(s) 92, 105, 550, 989, 1309
AcoI YGGCCR 1 cut(s) 319
AcuI CTGAAG 1 cut(s) 1284
AcvI CACGTG 1 cut(s) 1201
AfaI GTAC 2 cut(s) 669, 1059
AfiI CCNNNNNNNGG 6 cut(s) 64, 90, 257, 348, 567, 1288
AflIII ACRYGT 2 cut(s) 172, 1200
AgsI TTSAA 6 cut(s) 32, 718, 880, 923, 1015, 1115
AhdI GACNNNNNGTC 1 cut(s) 113
AhlI ACTAGT 2 cut(s) 385, 524
AjnI CCWGG 1 cut(s) 697
AluBI AGCT 8 cut(s) 371, 425, 484, 599, 682, 785, 860, 1220
AluI AGCT 8 cut(s) 371, 425, 484, 599, 682, 785, 860, 1220
Alw21I GWGCWC 2 cut(s) 1200, 1305
Alw26I GTCTC 2 cut(s) 266, 635
AlwI GGATC 5 cut(s) 92, 105, 550, 989, 1309
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 5 cut(s) 81, 197, 319, 351, 1205
ApeKI GCWGC 4 cut(s) 179, 425, 450, 1217
AseI ATTAAT 1 cut(s) 917
AspLEI GCGC 4 cut(s) 190, 577, 620, 1279
AspS9I GGNCC 4 cut(s) 107, 115, 197, 351
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 5 cut(s) 635, 737, 1238, 1240, 1310
AsuNHI GCTAGC 1 cut(s) 599
AvaII GGWCC 2 cut(s) 107, 115
AxyI CCTNAGG 2 cut(s) 438, 507
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 752
BarI GAAGNNNNNNTAC 2 cut(s) 153, 185
BbrPI CACGTG 1 cut(s) 1201
BbsI GAAGAC 1 cut(s) 593
Bbv12I GWGCWC 2 cut(s) 1200, 1305
BbvI GCAGC 4 cut(s) 191, 412, 462, 1229
BccI CCATC 6 cut(s) 260, 287, 547, 730, 1016, 1251
BceAI ACGGC 2 cut(s) 20, 217
BciT130I CCWGG 1 cut(s) 699
BciVI GTATCC 1 cut(s) 502
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 2 cut(s) 266, 635
BcuI ACTAGT 2 cut(s) 385, 524
BfaI CTAG 7 cut(s) 386, 429, 516, 525, 591, 600, 1336
BfoI RGCGCY 1 cut(s) 578
BfuI GTATCC 1 cut(s) 502
BisI GCNGC 6 cut(s) 180, 426, 451, 462, 573, 1218
BlsI GCNGC 6 cut(s) 181, 427, 452, 463, 574, 1219
Bme1390I CCNGG 2 cut(s) 102, 699
Bme18I GGWCC 2 cut(s) 107, 115
BmeRI GACNNNNNGTC 1 cut(s) 113
BmgT120I GGNCC 4 cut(s) 107, 115, 197, 351
BmiI GGNNCC 3 cut(s) 99, 277, 352
BmrFI CCNGG 2 cut(s) 102, 699
BmsI GCATC 5 cut(s) 502, 566, 879, 1017, 1047
BmtI GCTAGC 1 cut(s) 603
BpiI GAAGAC 1 cut(s) 593
Bpu10I CCTNAGC 1 cut(s) 751
BpuEI CTTGAG 1 cut(s) 988
BpuMI CCSGG 1 cut(s) 102
BsaAI YACGTR 3 cut(s) 839, 1201, 1306
BsaI GGTCTC 1 cut(s) 266
BsaJI CCNNGG 1 cut(s) 976
BsaWI WCCGGW 3 cut(s) 57, 109, 1146
BsaXI ACNNNNNCTCC 6 cut(s) 789, 819, 945, 975, 1187, 1217
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 90, 257, 348, 567, 1288
Bse118I RCCGGY 1 cut(s) 1281
Bse1I ACTGG 1 cut(s) 832
Bse21I CCTNAGG 2 cut(s) 438, 507
BseBI CCWGG 1 cut(s) 699
BseDI CCNNGG 1 cut(s) 976
BseGI GGATG 4 cut(s) 517, 557, 964, 1032
BseLI CCNNNNNNNGG 6 cut(s) 64, 90, 257, 348, 567, 1288
BseMII CTCAG 5 cut(s) 351, 452, 498, 765, 1077
BseNI ACTGG 1 cut(s) 832
BseRI GAGGAG 2 cut(s) 229, 1208
BseXI GCAGC 4 cut(s) 191, 412, 462, 1229
BsgI GTGCAG 2 cut(s) 291, 1074
Bsh1236I CGCG 2 cut(s) 174, 188
BshFI GGCC 5 cut(s) 83, 199, 321, 353, 1207
BsiHKAI GWGCWC 2 cut(s) 1200, 1305
BsiSI CCGG 5 cut(s) 58, 101, 110, 1147, 1282
BslFI GGGAC 2 cut(s) 396, 594
BslI CCNNNNNNNGG 6 cut(s) 64, 90, 257, 348, 567, 1288
BsmAI GTCTC 2 cut(s) 266, 635
BsmFI GGGAC 2 cut(s) 396, 594
BsmI GAATGC 1 cut(s) 724
BsnI GGCC 5 cut(s) 83, 199, 321, 353, 1207
Bso31I GGTCTC 1 cut(s) 266
Bsp1286I GDGCHC 3 cut(s) 752, 1200, 1305
Bsp143I GATC 4 cut(s) 97, 542, 981, 1314
BspACI CCGC 6 cut(s) 186, 230, 461, 572, 712, 793
BspANI GGCC 5 cut(s) 83, 199, 321, 353, 1207
BspCNI CTCAG 5 cut(s) 352, 451, 499, 764, 1076
BspFNI CGCG 2 cut(s) 174, 188
BspLI GGNNCC 3 cut(s) 99, 277, 352
BspOI GCTAGC 1 cut(s) 603
BspPI GGATC 5 cut(s) 92, 105, 550, 989, 1309
BspQI GCTCTTC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 266
BsrFI RCCGGY 1 cut(s) 1281
BsrI ACTGG 1 cut(s) 832
BssAI RCCGGY 1 cut(s) 1281
BssECI CCNNGG 1 cut(s) 976
BssMI GATC 4 cut(s) 97, 542, 981, 1314
BssNAI GTATAC 1 cut(s) 410
BssT1I CCWWGG 1 cut(s) 976
Bst1107I GTATAC 1 cut(s) 410
Bst2UI CCWGG 1 cut(s) 699
Bst4CI ACNGT 2 cut(s) 652, 1250
Bst6I CTCTTC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBAI YACGTR 3 cut(s) 839, 1201, 1306
BstC8I GCNNGC 7 cut(s) 311, 448, 601, 646, 1009, 1120, 1141
BstDEI CTNAG 7 cut(s) 256, 360, 438, 507, 751, 1063, 1107
BstF5I GGATG 4 cut(s) 517, 557, 964, 1032
BstFNI CGCG 2 cut(s) 174, 188
BstH2I RGCGCY 1 cut(s) 578
BstHHI GCGC 4 cut(s) 190, 577, 620, 1279
BstKTI GATC 4 cut(s) 100, 545, 984, 1317
BstMAI GTCTC 2 cut(s) 266, 635
BstMBI GATC 4 cut(s) 97, 542, 981, 1314
BstMWI GCNNNNNNNGC 7 cut(s) 185, 196, 425, 1044, 1087, 1204, 1274
BstNI CCWGG 1 cut(s) 699
BstNSI RCATGY 2 cut(s) 450, 648
BstSCI CCNGG 2 cut(s) 100, 697
BstUI CGCG 2 cut(s) 174, 188
BstV1I GCAGC 4 cut(s) 191, 412, 462, 1229
BstV2I GAAGAC 1 cut(s) 593
BstX2I RGATCY 2 cut(s) 97, 1314
BstYI RGATCY 2 cut(s) 97, 1314
BstZ17I GTATAC 1 cut(s) 410
Bsu36I CCTNAGG 2 cut(s) 438, 507
BsuI GTATCC 1 cut(s) 502
BsuRI GGCC 5 cut(s) 83, 199, 321, 353, 1207
BtgZI GCGATG 1 cut(s) 856
BtsCI GGATG 4 cut(s) 517, 557, 964, 1032
BtsIMutI CAGTG 2 cut(s) 51, 648
Cac8I GCNNGC 7 cut(s) 311, 448, 601, 646, 1009, 1120, 1141
CaiI CAGNNNCTG 1 cut(s) 425
CfoI GCGC 4 cut(s) 190, 577, 620, 1279
Cfr10I RCCGGY 1 cut(s) 1281
Cfr13I GGNCC 4 cut(s) 107, 115, 197, 351
Csp6I GTAC 2 cut(s) 668, 1058
CviAII CATG 4 cut(s) 447, 645, 743, 1288
CviQI GTAC 2 cut(s) 668, 1058
DdeI CTNAG 7 cut(s) 256, 360, 438, 507, 751, 1063, 1107
DpnI GATC 4 cut(s) 99, 544, 983, 1316
DpnII GATC 4 cut(s) 97, 542, 981, 1314
DrdI GACNNNNNNGTC 1 cut(s) 161
DriI GACNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 161
EaeI YGGCCR 1 cut(s) 319
Eam1104I CTCTTC 1 cut(s) 8
Eam1105I GACNNNNNGTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 976
Eco24I GRGCYC 1 cut(s) 752
Eco31I GGTCTC 1 cut(s) 266
Eco47I GGWCC 2 cut(s) 107, 115
Eco57I CTGAAG 1 cut(s) 1284
Eco72I CACGTG 1 cut(s) 1201
Eco81I CCTNAGG 2 cut(s) 438, 507
EcoO109I RGGNCCY 2 cut(s) 115, 351
EcoRII CCWGG 1 cut(s) 697
EcoT14I CCWWGG 1 cut(s) 976
EcoT38I GRGCYC 1 cut(s) 752
ErhI CCWWGG 1 cut(s) 976
FaeI CATG 4 cut(s) 450, 648, 746, 1291
FaqI GGGAC 2 cut(s) 396, 594
FatI CATG 4 cut(s) 446, 644, 742, 1287
FauI CCCGC 2 cut(s) 237, 786
FauNDI CATATG 1 cut(s) 943
FblI GTMKAC 1 cut(s) 409
Fnu4HI GCNGC 6 cut(s) 180, 426, 451, 462, 573, 1218
FokI GGATG 4 cut(s) 524, 544, 971, 1039
FriOI GRGCYC 1 cut(s) 752
Fsp4HI GCNGC 6 cut(s) 180, 426, 451, 462, 573, 1218
FspBI CTAG 7 cut(s) 386, 429, 516, 525, 591, 600, 1336
GlaI GCGC 4 cut(s) 189, 576, 619, 1278
GluI GCNGC 6 cut(s) 180, 426, 451, 462, 573, 1218
HaeII RGCGCY 1 cut(s) 578
HaeIII GGCC 5 cut(s) 83, 199, 321, 353, 1207
HapII CCGG 5 cut(s) 58, 101, 110, 1147, 1282
HhaI GCGC 4 cut(s) 190, 577, 620, 1279
Hin1II CATG 4 cut(s) 450, 648, 746, 1291
Hin6I GCGC 4 cut(s) 188, 575, 618, 1277
HinP1I GCGC 4 cut(s) 188, 575, 618, 1277
HinfI GANTC 3 cut(s) 48, 241, 607
HpaII CCGG 5 cut(s) 58, 101, 110, 1147, 1282
HphI GGTGA 5 cut(s) 635, 737, 1238, 1240, 1310
Hpy166II GTNNAC 3 cut(s) 107, 410, 1060
Hpy188I TCNGA 5 cut(s) 122, 735, 1066, 1133, 1264
Hpy188III TCNNGA 5 cut(s) 45, 211, 263, 283, 967
Hpy8I GTNNAC 3 cut(s) 107, 410, 1060
Hpy99I CGWCG 1 cut(s) 830
HpyAV CCTTC 4 cut(s) 58, 64, 73, 358
HpyCH4III ACNGT 2 cut(s) 652, 1250
HpyCH4IV ACGT 3 cut(s) 838, 1200, 1305
HpyCH4V TGCA 7 cut(s) 272, 446, 450, 648, 870, 1055, 1217
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 196, 425, 1044, 1087, 1204, 1274
HpyF3I CTNAG 7 cut(s) 256, 360, 438, 507, 751, 1063, 1107
HpySE526I ACGT 3 cut(s) 838, 1200, 1305
Hsp92II CATG 4 cut(s) 450, 648, 746, 1291
HspAI GCGC 4 cut(s) 188, 575, 618, 1277
Kzo9I GATC 4 cut(s) 97, 542, 981, 1314
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 2 cut(s) 857, 1195
Lsp1109I GCAGC 4 cut(s) 191, 412, 462, 1229
LweI GCATC 5 cut(s) 502, 566, 879, 1017, 1047
MaeI CTAG 7 cut(s) 386, 429, 516, 525, 591, 600, 1336
MaeII ACGT 3 cut(s) 838, 1200, 1305
MaeIII GTNAC 3 cut(s) 220, 337, 834
MalI GATC 4 cut(s) 99, 544, 983, 1316
MboI GATC 4 cut(s) 97, 542, 981, 1314
MboII GAAGA 8 cut(s) 17, 25, 73, 383, 488, 598, 1010, 1324
MflI RGATCY 2 cut(s) 97, 1314
MhlI GDGCHC 3 cut(s) 752, 1200, 1305
MluCI AATT 4 cut(s) 774, 914, 918, 1176
MluI ACGCGT 1 cut(s) 172
MlyI GAGTC 2 cut(s) 235, 616
MseI TTAA 4 cut(s) 678, 801, 917, 930
MslI CAYNNNNRTG 3 cut(s) 173, 1065, 1133
MspA1I CMGCKG 2 cut(s) 793, 1220
MspI CCGG 5 cut(s) 58, 101, 110, 1147, 1282
MspR9I CCNGG 2 cut(s) 102, 699
Mva1269I GAATGC 1 cut(s) 724
MvaI CCWGG 1 cut(s) 699
MvnI CGCG 2 cut(s) 174, 188
MwoI GCNNNNNNNGC 7 cut(s) 185, 196, 425, 1044, 1087, 1204, 1274
NciI CCSGG 1 cut(s) 102
NdeI CATATG 1 cut(s) 943
NdeII GATC 4 cut(s) 97, 542, 981, 1314
NheI GCTAGC 1 cut(s) 599
NlaIII CATG 4 cut(s) 450, 648, 746, 1291
NlaIV GGNNCC 3 cut(s) 99, 277, 352
NmuCI GTSAC 1 cut(s) 220
NspI RCATGY 2 cut(s) 450, 648
PaeI GCATGC 2 cut(s) 450, 648
PciSI GCTCTTC 1 cut(s) 8
PctI GAATGC 1 cut(s) 724
PfeI GAWTC 1 cut(s) 48
PflMI CCANNNNNTGG 1 cut(s) 567
PkrI GCNGC 6 cut(s) 181, 427, 452, 463, 574, 1219
PleI GAGTC 2 cut(s) 235, 615
PmaCI CACGTG 1 cut(s) 1201
PmlI CACGTG 1 cut(s) 1201
PpsI GAGTC 2 cut(s) 235, 615
Ppu21I YACGTR 3 cut(s) 839, 1201, 1306
PpuMI RGGWCCY 1 cut(s) 115
PshBI ATTAAT 1 cut(s) 917
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 697
PspCI CACGTG 1 cut(s) 1201
PspGI CCWGG 1 cut(s) 697
PspN4I GGNNCC 3 cut(s) 99, 277, 352
PspPI GGNCC 4 cut(s) 107, 115, 197, 351
PspPPI RGGWCCY 1 cut(s) 115
PstNI CAGNNNCTG 1 cut(s) 425
PsuI RGATCY 2 cut(s) 97, 1314
PvuII CAGCTG 1 cut(s) 1220
RsaI GTAC 2 cut(s) 669, 1059
RsaNI GTAC 2 cut(s) 668, 1058
RseI CAYNNNNRTG 3 cut(s) 173, 1065, 1133
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 4 cut(s) 678, 801, 917, 930
SatI GCNGC 6 cut(s) 180, 426, 451, 462, 573, 1218
Sau3AI GATC 4 cut(s) 97, 542, 981, 1314
Sau96I GGNCC 4 cut(s) 107, 115, 197, 351
SchI GAGTC 2 cut(s) 235, 616
ScrFI CCNGG 2 cut(s) 102, 699
SduI GDGCHC 3 cut(s) 752, 1200, 1305
SfaNI GCATC 5 cut(s) 502, 566, 879, 1017, 1047
SinI GGWCC 2 cut(s) 107, 115
SmiMI CAYNNNNRTG 3 cut(s) 173, 1065, 1133
SmlI CTYRAG 1 cut(s) 967
SmoI CTYRAG 1 cut(s) 967
SpeI ACTAGT 2 cut(s) 385, 524
SphI GCATGC 2 cut(s) 450, 648
Sse9I AATT 4 cut(s) 774, 914, 918, 1176
SsiI CCGC 6 cut(s) 186, 230, 461, 572, 712, 793
SspI AATATT 1 cut(s) 989
SspMI CTAG 7 cut(s) 386, 429, 516, 525, 591, 600, 1336
StyD4I CCNGG 2 cut(s) 100, 697
StyI CCWWGG 1 cut(s) 976
TaaI ACNGT 2 cut(s) 652, 1250
TaiI ACGT 3 cut(s) 841, 1203, 1308
TaqI TCGA 4 cut(s) 210, 264, 282, 984
TaqII GACCGA 1 cut(s) 281
TasI AATT 4 cut(s) 774, 914, 918, 1176
TatI WGTACW 2 cut(s) 667, 1057
TauI GCSGC 2 cut(s) 464, 575
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 4 cut(s) 678, 801, 917, 930
Tru9I TTAA 4 cut(s) 678, 801, 917, 930
TscAI CASTG 2 cut(s) 58, 655
TseFI GTSAC 1 cut(s) 220
TseI GCWGC 4 cut(s) 179, 425, 450, 1217
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 5 cut(s) 26, 92, 174, 599, 731
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 58, 655
Van91I CCANNNNNTGG 1 cut(s) 567
VpaK11BI GGWCC 2 cut(s) 107, 115
VspI ATTAAT 1 cut(s) 917
XceI RCATGY 2 cut(s) 450, 648
XmiI GTMKAC 1 cut(s) 409
XspI CTAG 7 cut(s) 386, 429, 516, 525, 591, 600, 1336
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.