E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 1805, 1836 |
| AccB1I | GGYRCC | 3 cut(s) | 602, 1805, 1836 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 941 |
| AccII | CGCG | 1 cut(s) | 1056 |
| AciI | CCGC | 5 cut(s) | 160, 293, 539, 1288, 1834 |
| AclWI | GGATC | 2 cut(s) | 479, 663 |
| AcoI | YGGCCR | 2 cut(s) | 294, 1164 |
| AcsI | RAATTY | 4 cut(s) | 163, 1141, 1852, 1965 |
| AcuI | CTGAAG | 3 cut(s) | 870, 1689, 1955 |
| AcyI | GRCGYC | 1 cut(s) | 5 |
| AfaI | GTAC | 4 cut(s) | 365, 681, 1807, 1838 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 941, 1145, 1409, 1695, 1876 |
| AgsI | TTSAA | 4 cut(s) | 54, 1202, 1338, 1496 |
| AjnI | CCWGG | 5 cut(s) | 1085, 1408, 1728, 1808, 1897 |
| Alw26I | GTCTC | 3 cut(s) | 78, 439, 1265 |
| AlwI | GGATC | 2 cut(s) | 479, 663 |
| Ama87I | CYCGRG | 1 cut(s) | 784 |
| AoxI | GGCC | 4 cut(s) | 294, 478, 1164, 1502 |
| ApeKI | GCWGC | 7 cut(s) | 401, 536, 586, 976, 1250, 1322, 1976 |
| ApoI | RAATTY | 4 cut(s) | 163, 1141, 1852, 1965 |
| Asp718I | GGTACC | 2 cut(s) | 1805, 1836 |
| AspS9I | GGNCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| AsuHPI | GGTGA | 7 cut(s) | 70, 96, 365, 476, 623, 719, 1747 |
| AvaI | CYCGRG | 1 cut(s) | 784 |
| AvaII | GGWCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| BaeGI | GKGCMC | 1 cut(s) | 867 |
| BalI | TGGCCA | 1 cut(s) | 1166 |
| BanI | GGYRCC | 3 cut(s) | 602, 1805, 1836 |
| BbvCI | CCTCAGC | 1 cut(s) | 432 |
| BbvI | GCAGC | 6 cut(s) | 388, 548, 598, 963, 1237, 1309 |
| BccI | CCATC | 8 cut(s) | 482, 722, 986, 1169, 1250, 1583, 1760, 1955 |
| BceAI | ACGGC | 1 cut(s) | 590 |
| BciT130I | CCWGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| BciVI | GTATCC | 2 cut(s) | 1392, 1836 |
| BclI | TGATCA | 2 cut(s) | 229, 1537 |
| BcoDI | GTCTC | 3 cut(s) | 78, 439, 1265 |
| BfaI | CTAG | 4 cut(s) | 596, 767, 1278, 1314 |
| BfmI | CTRYAG | 2 cut(s) | 534, 840 |
| BfuI | GTATCC | 2 cut(s) | 1392, 1836 |
| BisI | GCNGC | 8 cut(s) | 294, 402, 537, 587, 977, 1251, 1323, 1977 |
| BlsI | GCNGC | 8 cut(s) | 295, 403, 538, 588, 978, 1252, 1324, 1978 |
| Bme1390I | CCNGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| Bme18I | GGWCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| BmeT110I | CYCGRG | 1 cut(s) | 784 |
| BmgT120I | GGNCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| BmiI | GGNNCC | 5 cut(s) | 604, 933, 1073, 1807, 1838 |
| BmrFI | CCNGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| BmrI | ACTGGG | 3 cut(s) | 86, 203, 1238 |
| BmsI | GCATC | 5 cut(s) | 897, 940, 1030, 1148, 1558 |
| BmuI | ACTGGG | 3 cut(s) | 86, 203, 1238 |
| BoxI | GACNNNNGTC | 1 cut(s) | 173 |
| BpmI | CTGGAG | 1 cut(s) | 1595 |
| Bpu10I | CCTNAGC | 1 cut(s) | 432 |
| BpuEI | CTTGAG | 1 cut(s) | 704 |
| BsaBI | GATNNNNATC | 2 cut(s) | 74, 1179 |
| BsaHI | GRCGYC | 1 cut(s) | 5 |
| BsaI | GGTCTC | 1 cut(s) | 1265 |
| BsaJI | CCNNGG | 6 cut(s) | 171, 1086, 1728, 1875, 1898, 1943 |
| BsaWI | WCCGGW | 2 cut(s) | 553, 1839 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 264, 294, 514, 544, 1107, 1137, 1820, 1850 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 941, 1145, 1409, 1695, 1876 |
| Bse1I | ACTGG | 6 cut(s) | 92, 209, 466, 808, 1233, 1578 |
| Bse3DI | GCAATG | 3 cut(s) | 917, 1245, 1452 |
| Bse8I | GATNNNNATC | 2 cut(s) | 74, 1179 |
| BseBI | CCWGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| BseDI | CCNNGG | 6 cut(s) | 171, 1086, 1728, 1875, 1898, 1943 |
| BseGI | GGATG | 7 cut(s) | 430, 1163, 1180, 1405, 1771, 1885, 1966 |
| BseJI | GATNNNNATC | 2 cut(s) | 74, 1179 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 941, 1145, 1409, 1695, 1876 |
| BseMI | GCAATG | 3 cut(s) | 917, 1245, 1452 |
| BseMII | CTCAG | 2 cut(s) | 145, 423 |
| BseNI | ACTGG | 6 cut(s) | 92, 209, 466, 808, 1233, 1578 |
| BseRI | GAGGAG | 3 cut(s) | 449, 1227, 1841 |
| BseSI | GKGCMC | 1 cut(s) | 867 |
| BseXI | GCAGC | 6 cut(s) | 388, 548, 598, 963, 1237, 1309 |
| BseYI | CCCAGC | 1 cut(s) | 257 |
| Bsh1236I | CGCG | 1 cut(s) | 1056 |
| BshFI | GGCC | 4 cut(s) | 296, 480, 1166, 1504 |
| BshNI | GGYRCC | 3 cut(s) | 602, 1805, 1836 |
| BsiHKCI | CYCGRG | 1 cut(s) | 784 |
| BsiSI | CCGG | 2 cut(s) | 554, 1840 |
| BslFI | GGGAC | 1 cut(s) | 372 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 941, 1145, 1409, 1695, 1876 |
| BsmAI | GTCTC | 3 cut(s) | 78, 439, 1265 |
| BsmFI | GGGAC | 1 cut(s) | 372 |
| BsnI | GGCC | 4 cut(s) | 296, 480, 1166, 1504 |
| Bso31I | GGTCTC | 1 cut(s) | 1265 |
| BsoBI | CYCGRG | 1 cut(s) | 784 |
| Bsp1286I | GDGCHC | 1 cut(s) | 867 |
| Bsp143I | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| BspACI | CCGC | 5 cut(s) | 160, 293, 539, 1288, 1834 |
| BspANI | GGCC | 4 cut(s) | 296, 480, 1166, 1504 |
| BspCNI | CTCAG | 2 cut(s) | 144, 424 |
| BspFNI | CGCG | 1 cut(s) | 1056 |
| BspLI | GGNNCC | 5 cut(s) | 604, 933, 1073, 1807, 1838 |
| BspMAI | CTGCAG | 1 cut(s) | 538 |
| BspPI | GGATC | 2 cut(s) | 479, 663 |
| BspT107I | GGYRCC | 3 cut(s) | 602, 1805, 1836 |
| BspTNI | GGTCTC | 1 cut(s) | 1265 |
| BsrDI | GCAATG | 3 cut(s) | 917, 1245, 1452 |
| BsrI | ACTGG | 6 cut(s) | 92, 209, 466, 808, 1233, 1578 |
| BssECI | CCNNGG | 6 cut(s) | 171, 1086, 1728, 1875, 1898, 1943 |
| BssMI | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| BssNI | GRCGYC | 1 cut(s) | 5 |
| BssT1I | CCWWGG | 1 cut(s) | 1943 |
| Bst2UI | CCWGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| Bst4CI | ACNGT | 5 cut(s) | 46, 119, 187, 224, 363 |
| Bst6I | CTCTTC | 1 cut(s) | 1408 |
| BstACI | GRCGYC | 1 cut(s) | 5 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 401 |
| BstC8I | GCNNGC | 5 cut(s) | 217, 825, 1517, 1581, 1815 |
| BstDEI | CTNAG | 3 cut(s) | 131, 432, 1471 |
| BstF5I | GGATG | 7 cut(s) | 430, 1163, 1180, 1405, 1771, 1885, 1966 |
| BstFNI | CGCG | 1 cut(s) | 1056 |
| BstKTI | GATC | 6 cut(s) | 78, 232, 474, 658, 712, 1540 |
| BstMAI | GTCTC | 3 cut(s) | 78, 439, 1265 |
| BstMBI | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 188, 293, 401, 410, 944, 1319, 1331 |
| BstNI | CCWGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| BstNSI | RCATGY | 1 cut(s) | 219 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 173 |
| BstSCI | CCNGG | 5 cut(s) | 1085, 1408, 1728, 1808, 1897 |
| BstSFI | CTRYAG | 2 cut(s) | 534, 840 |
| BstSLI | GKGCMC | 1 cut(s) | 867 |
| BstUI | CGCG | 1 cut(s) | 1056 |
| BstV1I | GCAGC | 6 cut(s) | 388, 548, 598, 963, 1237, 1309 |
| BstX2I | RGATCY | 1 cut(s) | 655 |
| BstYI | RGATCY | 1 cut(s) | 655 |
| BsuI | GTATCC | 2 cut(s) | 1392, 1836 |
| BsuRI | GGCC | 4 cut(s) | 296, 480, 1166, 1504 |
| BtsCI | GGATG | 7 cut(s) | 430, 1163, 1180, 1405, 1771, 1885, 1966 |
| BtsI | GCAGTG | 1 cut(s) | 1228 |
| BtsIMutI | CAGTG | 3 cut(s) | 115, 1228, 1571 |
| Cac8I | GCNNGC | 5 cut(s) | 217, 825, 1517, 1581, 1815 |
| Cfr13I | GGNCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| CseI | GACGC | 1 cut(s) | 1062 |
| Csp6I | GTAC | 4 cut(s) | 364, 680, 1806, 1837 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1750, 1785 |
| CviAII | CATG | 6 cut(s) | 28, 216, 1127, 1162, 1619, 1745 |
| CviQI | GTAC | 4 cut(s) | 364, 680, 1806, 1837 |
| DdeI | CTNAG | 3 cut(s) | 131, 432, 1471 |
| DpnI | GATC | 6 cut(s) | 77, 231, 473, 657, 711, 1539 |
| DpnII | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| DraI | TTTAAA | 1 cut(s) | 1650 |
| EaeI | YGGCCR | 2 cut(s) | 294, 1164 |
| Eam1104I | CTCTTC | 1 cut(s) | 1408 |
| EarI | CTCTTC | 1 cut(s) | 1408 |
| Eco130I | CCWWGG | 1 cut(s) | 1943 |
| Eco31I | GGTCTC | 1 cut(s) | 1265 |
| Eco47I | GGWCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| Eco57I | CTGAAG | 3 cut(s) | 870, 1689, 1955 |
| Eco88I | CYCGRG | 1 cut(s) | 784 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1071 |
| EcoRI | GAATTC | 1 cut(s) | 1965 |
| EcoRII | CCWGG | 5 cut(s) | 1085, 1408, 1728, 1808, 1897 |
| EcoT14I | CCWWGG | 1 cut(s) | 1943 |
| EcoT22I | ATGCAT | 3 cut(s) | 397, 922, 1163 |
| ErhI | CCWWGG | 1 cut(s) | 1943 |
| FaeI | CATG | 6 cut(s) | 31, 219, 1130, 1165, 1622, 1748 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 696, 728 |
| FaqI | GGGAC | 1 cut(s) | 372 |
| FatI | CATG | 6 cut(s) | 27, 215, 1126, 1161, 1618, 1744 |
| FauI | CCCGC | 1 cut(s) | 1281 |
| FbaI | TGATCA | 2 cut(s) | 229, 1537 |
| Fnu4HI | GCNGC | 8 cut(s) | 294, 402, 537, 587, 977, 1251, 1323, 1977 |
| FokI | GGATG | 7 cut(s) | 437, 1170, 1187, 1392, 1778, 1892, 1973 |
| Fsp4HI | GCNGC | 8 cut(s) | 294, 402, 537, 587, 977, 1251, 1323, 1977 |
| FspBI | CTAG | 4 cut(s) | 596, 767, 1278, 1314 |
| GluI | GCNGC | 8 cut(s) | 294, 402, 537, 587, 977, 1251, 1323, 1977 |
| GsaI | CCCAGC | 1 cut(s) | 261 |
| GsuI | CTGGAG | 1 cut(s) | 1595 |
| HaeIII | GGCC | 4 cut(s) | 296, 480, 1166, 1504 |
| HapII | CCGG | 2 cut(s) | 554, 1840 |
| HgaI | GACGC | 1 cut(s) | 1062 |
| Hin1I | GRCGYC | 1 cut(s) | 5 |
| Hin1II | CATG | 6 cut(s) | 31, 219, 1130, 1165, 1622, 1748 |
| HindIII | AAGCTT | 1 cut(s) | 239 |
| HinfI | GANTC | 5 cut(s) | 70, 564, 1118, 1700, 1948 |
| HpaII | CCGG | 2 cut(s) | 554, 1840 |
| HphI | GGTGA | 7 cut(s) | 70, 96, 365, 476, 623, 719, 1747 |
| Hpy166II | GTNNAC | 3 cut(s) | 781, 1226, 1616 |
| Hpy188III | TCNNGA | 6 cut(s) | 54, 67, 498, 653, 1278, 1952 |
| Hpy8I | GTNNAC | 3 cut(s) | 781, 1226, 1616 |
| Hpy99I | CGWCG | 1 cut(s) | 1056 |
| HpyAV | CCTTC | 7 cut(s) | 298, 325, 698, 736, 1490, 1494, 1900 |
| HpyCH4III | ACNGT | 5 cut(s) | 46, 119, 187, 224, 363 |
| HpyCH4IV | ACGT | 1 cut(s) | 891 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 188, 293, 401, 410, 944, 1319, 1331 |
| HpyF3I | CTNAG | 3 cut(s) | 131, 432, 1471 |
| HpySE526I | ACGT | 1 cut(s) | 891 |
| Hsp92I | GRCGYC | 1 cut(s) | 5 |
| Hsp92II | CATG | 6 cut(s) | 31, 219, 1130, 1165, 1622, 1748 |
| KpnI | GGTACC | 2 cut(s) | 1809, 1840 |
| Ksp22I | TGATCA | 2 cut(s) | 229, 1537 |
| Kzo9I | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| LmnI | GCTCC | 4 cut(s) | 722, 1195, 1576, 1945 |
| Lsp1109I | GCAGC | 6 cut(s) | 388, 548, 598, 963, 1237, 1309 |
| LweI | GCATC | 5 cut(s) | 897, 940, 1030, 1148, 1558 |
| MaeI | CTAG | 4 cut(s) | 596, 767, 1278, 1314 |
| MaeII | ACGT | 1 cut(s) | 891 |
| MaeIII | GTNAC | 6 cut(s) | 119, 556, 698, 1102, 1478, 1542 |
| MalI | GATC | 6 cut(s) | 77, 231, 473, 657, 711, 1539 |
| MboI | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| MflI | RGATCY | 1 cut(s) | 655 |
| MhlI | GDGCHC | 1 cut(s) | 867 |
| MlsI | TGGCCA | 1 cut(s) | 1166 |
| MluCI | AATT | 9 cut(s) | 163, 267, 375, 1044, 1141, 1326, 1677, 1852, 1965 |
| MluNI | TGGCCA | 1 cut(s) | 1166 |
| MlyI | GAGTC | 2 cut(s) | 573, 1957 |
| MmeI | TCCRAC | 1 cut(s) | 700 |
| Mox20I | TGGCCA | 1 cut(s) | 1166 |
| Mph1103I | ATGCAT | 3 cut(s) | 397, 922, 1163 |
| MscI | TGGCCA | 1 cut(s) | 1166 |
| MseI | TTAA | 5 cut(s) | 627, 672, 981, 1259, 1649 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1623 |
| Msp20I | TGGCCA | 1 cut(s) | 1166 |
| MspA1I | CMGCKG | 2 cut(s) | 539, 938 |
| MspI | CCGG | 2 cut(s) | 554, 1840 |
| MspR9I | CCNGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| MvaI | CCWGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| MvnI | CGCG | 1 cut(s) | 1056 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 188, 293, 401, 410, 944, 1319, 1331 |
| NdeII | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| NlaIII | CATG | 6 cut(s) | 31, 219, 1130, 1165, 1622, 1748 |
| NlaIV | GGNNCC | 5 cut(s) | 604, 933, 1073, 1807, 1838 |
| NmuCI | GTSAC | 2 cut(s) | 119, 1102 |
| NsiI | ATGCAT | 3 cut(s) | 397, 922, 1163 |
| NspI | RCATGY | 1 cut(s) | 219 |
| PaeI | GCATGC | 1 cut(s) | 219 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1385 |
| PfeI | GAWTC | 3 cut(s) | 70, 1118, 1700 |
| PflFI | GACNNNGTC | 1 cut(s) | 1368 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 941 |
| PfoI | TCCNGGA | 1 cut(s) | 1408 |
| PkrI | GCNGC | 8 cut(s) | 295, 403, 538, 588, 978, 1252, 1324, 1978 |
| PleI | GAGTC | 2 cut(s) | 572, 1956 |
| PpsI | GAGTC | 2 cut(s) | 572, 1956 |
| PpuMI | RGGWCCY | 1 cut(s) | 1071 |
| PshAI | GACNNNNGTC | 1 cut(s) | 173 |
| Psp5II | RGGWCCY | 1 cut(s) | 1071 |
| Psp6I | CCWGG | 5 cut(s) | 1085, 1408, 1728, 1808, 1897 |
| PspFI | CCCAGC | 1 cut(s) | 257 |
| PspGI | CCWGG | 5 cut(s) | 1085, 1408, 1728, 1808, 1897 |
| PspN4I | GGNNCC | 5 cut(s) | 604, 933, 1073, 1807, 1838 |
| PspPI | GGNCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| PspPPI | RGGWCCY | 1 cut(s) | 1071 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1701, 1733 |
| PstI | CTGCAG | 1 cut(s) | 538 |
| PsuI | RGATCY | 1 cut(s) | 655 |
| PsyI | GACNNNGTC | 1 cut(s) | 1368 |
| PvuII | CAGCTG | 1 cut(s) | 938 |
| RsaI | GTAC | 4 cut(s) | 365, 681, 1807, 1838 |
| RsaNI | GTAC | 4 cut(s) | 364, 680, 1806, 1837 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1623 |
| SaqAI | TTAA | 5 cut(s) | 627, 672, 981, 1259, 1649 |
| SatI | GCNGC | 8 cut(s) | 294, 402, 537, 587, 977, 1251, 1323, 1977 |
| Sau3AI | GATC | 6 cut(s) | 75, 229, 471, 655, 709, 1537 |
| Sau96I | GGNCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| SchI | GAGTC | 2 cut(s) | 573, 1957 |
| ScrFI | CCNGG | 5 cut(s) | 1087, 1410, 1730, 1810, 1899 |
| SduI | GDGCHC | 1 cut(s) | 867 |
| SfaNI | GCATC | 5 cut(s) | 897, 940, 1030, 1148, 1558 |
| SfcI | CTRYAG | 2 cut(s) | 534, 840 |
| SinI | GGWCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1623 |
| SmlI | CTYRAG | 1 cut(s) | 683 |
| SmoI | CTYRAG | 1 cut(s) | 683 |
| SphI | GCATGC | 1 cut(s) | 219 |
| Sse9I | AATT | 9 cut(s) | 163, 267, 375, 1044, 1141, 1326, 1677, 1852, 1965 |
| SsiI | CCGC | 5 cut(s) | 160, 293, 539, 1288, 1834 |
| SspI | AATATT | 1 cut(s) | 987 |
| SspMI | CTAG | 4 cut(s) | 596, 767, 1278, 1314 |
| StyD4I | CCNGG | 5 cut(s) | 1085, 1408, 1728, 1808, 1897 |
| StyI | CCWWGG | 1 cut(s) | 1943 |
| TaaI | ACNGT | 5 cut(s) | 46, 119, 187, 224, 363 |
| TaiI | ACGT | 1 cut(s) | 894 |
| TaqI | TCGA | 2 cut(s) | 740, 850 |
| TaqII | GACCGA | 1 cut(s) | 185 |
| TasI | AATT | 9 cut(s) | 163, 267, 375, 1044, 1141, 1326, 1677, 1852, 1965 |
| TatI | WGTACW | 2 cut(s) | 363, 679 |
| TauI | GCSGC | 1 cut(s) | 296 |
| TfiI | GAWTC | 3 cut(s) | 70, 1118, 1700 |
| Tru1I | TTAA | 5 cut(s) | 627, 672, 981, 1259, 1649 |
| Tru9I | TTAA | 5 cut(s) | 627, 672, 981, 1259, 1649 |
| TscAI | CASTG | 3 cut(s) | 122, 1228, 1578 |
| TseFI | GTSAC | 2 cut(s) | 119, 1102 |
| TseI | GCWGC | 7 cut(s) | 401, 536, 586, 976, 1250, 1322, 1976 |
| Tsp45I | GTSAC | 2 cut(s) | 119, 1102 |
| TspDTI | ATGAA | 4 cut(s) | 44, 1226, 1634, 1635 |
| TspGWI | ACGGA | 1 cut(s) | 1320 |
| TspRI | CASTG | 3 cut(s) | 122, 1228, 1578 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1368 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 941 |
| VpaK11BI | GGWCC | 4 cut(s) | 371, 1071, 1370, 1895 |
| XapI | RAATTY | 4 cut(s) | 163, 1141, 1852, 1965 |
| XbaI | TCTAGA | 1 cut(s) | 1277 |
| XceI | RCATGY | 1 cut(s) | 219 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1083 |
| XspI | CTAG | 4 cut(s) | 596, 767, 1278, 1314 |
| Zsp2I | ATGCAT | 3 cut(s) | 397, 922, 1163 |