Rw4G007190

Cyclic phosphodiesterase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Forward (+)
15069099 .. 15072014
2916 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G007190.1

Sequence Viewer

Length: 1959 bp
ATGATTGTGTGTTATGTAATAGATCAAGAAGACGATCGAGAAGGAAAAGTTATATCTGAAATGACGTTGGAGTTTGTCAAAACTATTGATGAAGATGTGGGGGAGGAAATCCTATCAATTCTGCCACCCAAATCTCTGAAGCGATTCCAGTGCGTCTCTAAAAGGTGGTATGCTCTGATCACCACTCCCAGGTTCGTAGCTAAGCACCTCTCCAATTCCATGCGCAACGATCTCTCCACTAGTGTTCTTATGAAACGTAGAGTCCATAAGGACACCAACTCTGACAAGACTCAAGAGTTGTTCTCATTTCTTCATTTTCGAAATGATGAAGATAATGATGTTGACGGTGTGCATGATGAGCATAGCTTTCTTTCTAGTATCCAGGAATTCCATATTCCGTTTTCTACCGGTGTAAAGACTCGGGCAGAATCACTTATAATTATAGGCCATTCTAATGGGATCATTTGTCTAGCTCAAGCAGCCTCTGGTGAGGTGATTATATGCAATCCAGCAATTCATGAATATAAGCTTCTTCCACCCTCTCCACACCTTCCAGATTCTGATTGGCCATGTAGCCCCTTATTCCGGTTCAGAGATGGTTTAGGATTTGGACACGATCCGAACTTTAACGAATATAAAGTTATTAACATTGGATTTCCTGCTCCAGAATTATCTACACCTGATGGATTTAACATTTATAATCCTCCCAAAGCAGCCGTCTATACCCTTGGTACTGATTCTTGGAGAGAGATCAGTACTGATTCGTTAGAAACAGAAACTACTATTCTTTGGCCAGAACAATTCCAGATGCACTTCAAGGATATGTGTTTTTGGCGGGGACAGGAACAACATAAGGAATTGGATGTGCTTGATGACGACGAGGAGCCATTCATTAGGGAAGTTATCATTATGTTTGATACTGGGGATGAGCTATTTCATAATATAATGTTACCGGATGAATTTTATTATCCGAATTATTTTGTTCCGAACCTTTTAGTGTGGAAGGACTCGGTTGCTCTTTTGGGAATACAAATCTGTCAACCATCATCATATGGAATATGGGTGATAGATGAATTTGGTGGTCCTAATGGTGGTGCTTGGACAAAACACATAACTTTTGAGCTCCCTGTGGAACCGTTGATATTTTGGAAGAGCGACGAGGTTCTTTTGAATGGTCCTAACGACACTGATTATAGAGGACTTATATTCTCTTATAATCTCGGTACCAAAAAGCTTAAAAATCTTCCCATTCAAAGCGAGCGACCTGACTCTACTGCTATTGTGTATGTGAGCAGCATAGTTTCAGTATTGGGAGGCAGCAAACCCAAGAGGAAAGATAATTCTACACCCAATGCTGAATTTTCTGTATTTGAGTACCCTTCTCCACCAGTCAGTCATTATATGGTTGACAAGAAAACTTACTCATATTCGGTGTGGGCAATCCCATCAGATGATATGTCTCTCCGGATTAAGAAAGTGATGGAGGGACTGCGGACTGAATTTGGCGGGCCGGAGATTGATCCCCACATTGCCGTTGTGGGGTCCATTCGTATGAAGCATGAGGATATGCTCAACAAGTTCAGATCTCTCCACTCTGATGTTATTTCTTCGTACAAAGCAAAAGTTAATCAAGTCGTTACTAGGAGTTCCTATTTCCAATGTATCTCCCTCCTCATTCATTCATCTTCCAAGGTGTCACCTGAGTTATCGTTTGCAACTGGAATCAGTGGTGGTCGATTCAGTTTCCGTAATAAAGTTAGGCCACATTTGAGCCTCCTTTATGGTTACCTGACAGAAGAAGAGAGGAAGAAAGCTCAAGAAAAAGTCAGTTATCTGGATGAAGGCCTCAGCAGCTTGAGCTTCTTTATAACTCGACTTGCATTGTACAAAATTGACTATAAAGATAGAAGTCTCAAATCATGGGAGAAGATTGATGATTACCCCCTCCAATTTGAGTAA

Protein Analysis

652

Amino Acids

74.62

Weight (kDa)

5.38

Isoelectric Point (pI)

43.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 31 - 65 2.7e-07 F-box domain
FBA_3 PF08268 122 - 375 1.7e-10 F-box associated beta propeller domain
FBA_1 PF07734 146 - 435 1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000046)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g19120 FvH4_1g19120 FvH4_1g19120 FvH4_1g19141 FvH4_1g19142 FvH4_2g10221 FvH4_2g25660 FvH4_5g01061 FvH4_5g09390 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_5g33841 FvH4_6g06590 FvH4_6g06610 FvH4_6g06630 FvH4_6g06660 FvH4_6g06663 FvH4_6g06670 FvH4_6g06680 FvH4_6g06690 FvH4_6g06700 FvH4_6g06730 FvH4_6g06750 FvH4_6g06760 FvH4_6g06780 FvH4_6g06790 FvH4_6g06791 FvH4_6g06802 FvH4_6g06820 FvH4_6g06831 FvH4_6g06840 FvH4_6g06840 FvH4_6g06850 FvH4_6g07680 FvH4_6g07700 FvH4_6g07710 FvH4_6g07720 FvH4_6g07720 FvH4_6g16041
malus_domestica MD00G1054600.v1.1 MD00G1149800.v1.1 MD01G1175000.v1.1 MD02G1021000.v1.1 MD02G1023800.v1.1 MD03G1052800.v1.1 MD04G1192400.v1.1 MD04G1199200.v1.1 MD09G1130400.v1.1 MD09G1130700.v1.1 MD10G1162200.v1.1 MD10G1162400.v1.1 MD10G1162500.v1.1 MD10G1162900.v1.1 MD12G1213000.v1.1 MD15G1153400.v1.1 MD15G1166700.v1.1 MD15G1166800.v1.1 MD15G1167000.v1.1 MD15G1167200.v1.1 MD15G1167500.v1.1 MD15G1167700.v1.1 MD17G1251100.v1.1 MD17G1251200.v1.1 MD17G1251300.v1.1 MD17G1251900.v1.1 MD17G1252000.v1.1 MD17G1252200.v1.1 MD17G1252300.v1.1 MD17G1252700.v1.1 MD17G1252800.v1.1 MD17G1253000.v1.1 MD17G1253700.v1.1 MD17G1253800.v1.1 MD17G1254200.v1.1 MD17G1254600.v1.1 MD17G1254700.v1.1 MD17G1255300.v1.1 MD17G1255800.v1.1 MD17G1255900.v1.1 MD17G1256000.v1.1 MD17G1256100.v1.1 MD17G1256300.v1.1
prunus_persica Prupe.6G311100_v2.0.a1 Prupe.6G311100_v2.0.a1 Prupe.6G316700_v2.0.a1 Prupe.6G318300_v2.0.a1 Prupe.6G319000_v2.0.a1 Prupe.6G319300_v2.0.a1 Prupe.6G319800_v2.0.a1 Prupe.6G320600_v2.0.a1 Prupe.8G219300_v2.0.a1 Prupe.8G219500_v2.0.a1
pyrus_communis pycom02g01850 pycom02g02140 pycom02g02150 pycom02g13410 pycom04g17600 pycom09g05340 pycom10g14000 pycom10g14030 pycom12g19920 pycom14g04440 pycom14g14190 pycom15g13780 pycom15g14890 pycom15g14930 pycom15g14950 pycom15g14970 pycom15g14980 pycom17g25470 pycom17g25480 pycom17g25490 pycom17g25550 pycom17g25600 pycom17g25640 pycom17g25660 pycom17g25800 pycom17g25820 pycom17g25830 pycom17g25840 pycom17g25850 pycom2181g00010
rosa_chinensis RchiOBHm_Chr2g0110151 RchiOBHm_Chr2g0110231 RchiOBHm_Chr2g0111631 RchiOBHm_Chr2g0111681 RchiOBHm_Chr2g0120621 RchiOBHm_Chr2g0123521 RchiOBHm_Chr3g0455781 RchiOBHm_Chr3g0455791 RchiOBHm_Chr3g0455861 RchiOBHm_Chr3g0455891 RchiOBHm_Chr3g0455931 RchiOBHm_Chr3g0455991 RchiOBHm_Chr3g0456091 RchiOBHm_Chr3g0456131 RchiOBHm_Chr3g0456171 RchiOBHm_Chr3g0456241 RchiOBHm_Chr3g0456251 RchiOBHm_Chr3g0456291 RchiOBHm_Chr3g0456311 RchiOBHm_Chr3g0457391 RchiOBHm_Chr3g0457451 RchiOBHm_Chr3g0458451 RchiOBHm_Chr3g0458461 RchiOBHm_Chr3g0461521 RchiOBHm_Chr3g0491541 RchiOBHm_Chr4g0398411 RchiOBHm_Chr4g0398421 RchiOBHm_Chr4g0413511 RchiOBHm_Chr4g0436451 RchiOBHm_Chr6g0259371 RchiOBHm_Chr6g0262491 RchiOBHm_Chr6g0279581 RchiOBHm_Chr6g0279591 RchiOBHm_Chr6g0293881 RchiOBHm_Chr6g0293911 RchiOBHm_Chr7g0233181
rosa_laevigata RLG00000008214 RLG00000013136 RLG00000015567 RLG00000019131 RLG00000024923 RLG00000024926 RLG00000025154 RLG00000025156 RLG00000025223 RLG00000025229 RLG00000025317 RLG00000025326
rosa_multiflora Rmu_co8090890.1_g000001 Rmu_co8287369.1_g000001 Rmu_co8301281.1_g000001 Rmu_sc0000279.1_g000014 Rmu_sc0000279.1_g000046 Rmu_sc0000279.1_g000061 Rmu_sc0000279.1_g000065 Rmu_sc0000596.1_g000011 Rmu_sc0000883.1_g000005 Rmu_sc0001267.1_g000019 Rmu_sc0001581.1_g000013 Rmu_sc0001844.1_g000008 Rmu_sc0001844.1_g000017 Rmu_sc0001861.1_g000008 Rmu_sc0001861.1_g000044 Rmu_sc0001861.1_g000063 Rmu_sc0001861.1_g000073 Rmu_sc0001861.1_g000106 Rmu_sc0002607.1_g000025 Rmu_sc0002607.1_g000026 Rmu_sc0002607.1_g000032 Rmu_sc0002607.1_g000034 Rmu_sc0002607.1_g000035 Rmu_sc0002607.1_g000042 Rmu_sc0002607.1_g000051 Rmu_sc0002607.1_g000058 Rmu_sc0002625.1_g000002 Rmu_sc0002625.1_g000003 Rmu_sc0002625.1_g000004 Rmu_sc0002677.1_g000001 Rmu_sc0003469.1_g000009 Rmu_sc0004010.1_g000001 Rmu_sc0004010.1_g000002 Rmu_sc0004094.1_g000042 Rmu_sc0004304.1_g000025 Rmu_sc0004649.1_g000009 Rmu_sc0004649.1_g000010 Rmu_sc0005278.1_g000027 Rmu_sc0005442.1_g000001 Rmu_sc0005647.1_g000011 Rmu_sc0005791.1_g000018 Rmu_sc0005791.1_g000024 Rmu_sc0006888.1_g000002 Rmu_sc0006888.1_g000015 Rmu_sc0006888.1_g000026 Rmu_sc0006888.1_g000084 Rmu_sc0007404.1_g000019 Rmu_sc0008973.1_g000010 Rmu_sc0008973.1_g000017 Rmu_sc0010432.1_g000005 Rmu_sc0013809.1_g000005 Rmu_sc0013809.1_g000006 Rmu_sc0016556.1_g000002 Rmu_sc0018685.1_g000001 Rmu_sc0020335.1_g000003 Rmu_sc0020335.1_g000006 Rmu_sc0023945.1_g000004 Rmu_sc0028194.1_g000001 Rmu_sc0029200.1_g000001 Rmu_sc0039289.1_g000001 Rmu_ssc0000046.1_g000002 Rmu_ssc0000046.1_g000004 Rmu_ssc0000046.1_g000005 Rmu_ssc0000046.1_g000006 Rmu_ssc0000046.1_g000013 Rmu_ssc0000050.1_g000055 Rmu_ssc0000091.1_g000004 Rmu_ssc0000240.1_g000040 Rmu_ssc0000240.1_g000041 Rmu_ssc0000470.1_g000007
rosa_roxburghii Rroxscaffold_177G00434420 Rroxscaffold_2G00091790 Rroxscaffold_2G00132170 Rroxscaffold_2G00132210 Rroxscaffold_2G00133660 Rroxscaffold_2G00133670 Rroxscaffold_2G00133680 Rroxscaffold_3G00227520 Rroxscaffold_5G00343380 Rroxscaffold_5G00357410 Rroxscaffold_6G00418180 Rroxscaffold_6G00418210 Rroxscaffold_6G00421020 Rroxscaffold_6G00421040 Rroxscaffold_6G00421870 Rroxscaffold_6G00421880 Rroxscaffold_6G00421890 Rroxscaffold_6G00421930 Rroxscaffold_6G00422700 Rroxscaffold_6G00422760 Rroxscaffold_6G00422820 Rroxscaffold_6G00422850 Rroxscaffold_6G00422860 Rroxscaffold_6G00422900 Rroxscaffold_6G00422910 Rroxscaffold_6G00422930 Rroxscaffold_6G00422970 Rroxscaffold_6G00423220 Rroxscaffold_6G00423450 Rroxscaffold_6G00423460 Rroxscaffold_6G00423730 Rroxscaffold_6G00423770 Rroxscaffold_6G00423810 Rroxscaffold_6G00423870 Rroxscaffold_6G00423880 Rroxscaffold_6G00423920 Rroxscaffold_6G00423940 Rroxscaffold_6G00423950 Rroxscaffold_6G00423980 Rroxscaffold_6G00423990 Rroxscaffold_7G00173840 Rroxscaffold_7G00188810 Rroxscaffold_7G00205200 Rroxscaffold_7G00206630
rosa_rugosa Rorug02G0165800 Rorug02G0165900 Rorug02G0174900 Rorug02G0175000 Rorug02G0175100 Rorug02G0175400 Rorug02G0175400 Rorug02G0229800 Rorug02G0461100.1 Rorug03G0009900 Rorug03G0010100 Rorug03G0010500 Rorug03G0010600 Rorug03G0010800 Rorug03G0011000 Rorug03G0011100 Rorug03G0011200 Rorug03G0011500 Rorug03G0011500 Rorug03G0011700 Rorug03G0011700 Rorug03G0011900 Rorug03G0012500 Rorug03G0012600 Rorug03G0012600 Rorug03G0020400 Rorug03G0020400 Rorug03G0020400 Rorug03G0028500 Rorug03G0028800 Rorug03G0028900 Rorug03G0029000 Rorug03G0029100 Rorug03G0051400 Rorug03G0051400 Rorug03G0051500 Rorug03G0249800 Rorug04G0007900 Rorug04G0120800 Rorug05G0588600 Rorug06G0125500 Rorug06G0125600 Rorug06G0125600 Rorug06G0125700 Rorug06G0125800.1 Rorug06G0125900 Rorug06G0239000 Rorug06G0239200 Rorug06G0239300 Rorug07G0279500
rosa_samantha Rh1CG180200 Rh2AG218000 Rh2AG218300 Rh2AG304900 Rh2BG240100 Rh2BG297600 Rh2BG311400 Rh2BG313100 Rh2CG231800 Rh2DG223700 Rh2DG224100 Rh2DG224800 Rh2DG235800 Rh2DG328900 Rh3AG087700 Rh3AG109600 Rh3BG090500 Rh3BG090700 Rh3BG113000 Rh3CG090800 Rh3CG114800 Rh3DG073000 Rh3DG073300 Rh3DG075900 Rh4AG086000 Rh4BG179800 Rh4CG093800 Rh6AG234500 Rh6BG238900 Rh6BG239000 Rh6CG079900 Rh6CG222200 Rh6CG240900 Rh6DG087200 Rh6DG100800 Rh7DG423000
rosa_wichuraiana Rw0G009310 Rw0G009320 Rw2G016840 Rw2G017600 Rw2G017630 Rw2G022960 Rw2G024440 Rw3G005620 Rw3G005650 Rw3G005700 Rw3G005740 Rw3G005750 Rw3G005770 Rw3G005790 Rw3G005810 Rw3G005840 Rw3G005850 Rw3G005970 Rw3G006000 Rw3G006050 Rw3G006060 Rw3G006070 Rw3G006080 Rw3G006090 Rw3G006120 Rw3G006130 Rw3G006150 Rw3G006180 Rw3G006190 Rw3G006220 Rw3G006920 Rw3G006930 Rw3G007460 Rw3G007470 Rw3G009280 Rw4G007160 Rw4G007190 Rw4G015040 Rw6G008980 Rw6G010260 Rw6G020470 Rw6G020480 Rw6G030660 Rw6G030680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 4 cut(s) 437, 699, 1215, 1868
Acc16I TGCGCA 1 cut(s) 224
Acc65I GGTACC 1 cut(s) 1223
AccB1I GGYRCC 1 cut(s) 1223
AccIII TCCGGA 1 cut(s) 1464
AciI CCGC 3 cut(s) 835, 1492, 1506
AclWI GGATC 3 cut(s) 467, 611, 1514
AcoI YGGCCR 2 cut(s) 566, 791
AcsI RAATTY 5 cut(s) 386, 959, 1073, 1358, 1499
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 6 cut(s) 733, 757, 1225, 1376, 1613, 1886
AfiI CCNNNNNNNGG 4 cut(s) 189, 585, 1091, 1539
AgeI ACCGGT 1 cut(s) 407
AgsI TTSAA 3 cut(s) 817, 1171, 1253
AhlI ACTAGT 1 cut(s) 239
AjnI CCWGG 2 cut(s) 188, 381
Alw21I GWGCWC 1 cut(s) 1125
Alw26I GTCTC 3 cut(s) 160, 1464, 1916
AlwI GGATC 3 cut(s) 467, 611, 1514
AlwNI CAGNNNCTG 2 cut(s) 485, 560
Ama87I CYCGRG 1 cut(s) 420
Aor13HI TCCGGA 1 cut(s) 1464
AoxI GGCC 6 cut(s) 445, 566, 791, 1508, 1760, 1843
ApeKI GCWGC 5 cut(s) 479, 713, 1293, 1317, 1851
ApoI RAATTY 5 cut(s) 386, 959, 1073, 1358, 1499
ArsI GACNNNNNNTTYG 2 cut(s) 702, 734
AsiGI ACCGGT 1 cut(s) 407
Asp700I GAANNNNTTC 1 cut(s) 143
Asp718I GGTACC 1 cut(s) 1223
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 4 cut(s) 1082, 1175, 1508, 1542
AsuHPI GGTGA 5 cut(s) 172, 500, 505, 1075, 1689
AsuII TTCGAA 1 cut(s) 319
AvaI CYCGRG 1 cut(s) 420
AvaII GGWCC 3 cut(s) 1082, 1175, 1542
BalI TGGCCA 2 cut(s) 568, 793
BanI GGYRCC 1 cut(s) 1223
BanII GRGCYC 1 cut(s) 1125
BbsI GAAGAC 1 cut(s) 36
Bbv12I GWGCWC 1 cut(s) 1125
BbvCI CCTCAGC 1 cut(s) 1847
BbvI GCAGC 5 cut(s) 491, 725, 1305, 1329, 1863
BccI CCATC 5 cut(s) 590, 677, 1051, 1453, 1474
BceAI ACGGC 2 cut(s) 701, 1517
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 2 cut(s) 190, 383
BciVI GTATCC 1 cut(s) 389
BclI TGATCA 1 cut(s) 177
BcoDI GTCTC 3 cut(s) 160, 1464, 1916
BcuI ACTAGT 1 cut(s) 239
BfaI CTAG 4 cut(s) 240, 375, 470, 1641
BfuI GTATCC 1 cut(s) 389
BglII AGATCT 1 cut(s) 1583
BisI GCNGC 5 cut(s) 480, 714, 1294, 1318, 1852
BlpI GCTNAGC 1 cut(s) 201
BlsI GCNGC 5 cut(s) 481, 715, 1295, 1319, 1853
BmcAI AGTACT 1 cut(s) 757
Bme1390I CCNGG 2 cut(s) 190, 383
Bme18I GGWCC 3 cut(s) 1082, 1175, 1542
BmeT110I CYCGRG 1 cut(s) 420
BmgT120I GGNCC 4 cut(s) 1082, 1175, 1508, 1542
BmiI GGNNCC 4 cut(s) 885, 1134, 1225, 1543
BmrFI CCNGG 2 cut(s) 190, 383
BmrI ACTGGG 1 cut(s) 930
BmsI GCATC 1 cut(s) 798
BmuI ACTGGG 1 cut(s) 930
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 287, 319
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 1847
Bpu1102I GCTNAGC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 319
BpuEI CTTGAG 4 cut(s) 276, 459, 1800, 1876
BsaJI CCNNGG 3 cut(s) 188, 727, 1689
BsaWI WCCGGW 4 cut(s) 407, 585, 952, 1464
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 585, 1091, 1539
Bse118I RCCGGY 1 cut(s) 407
Bse1I ACTGG 4 cut(s) 148, 925, 1388, 1723
Bse3DI GCAATG 1 cut(s) 1527
BseAI TCCGGA 1 cut(s) 1464
BseBI CCWGG 2 cut(s) 190, 383
BseDI CCNNGG 3 cut(s) 188, 727, 1689
BseGI GGATG 4 cut(s) 868, 931, 961, 1843
BseLI CCNNNNNNNGG 4 cut(s) 189, 585, 1091, 1539
BseMI GCAATG 1 cut(s) 1527
BseMII CTCAG 2 cut(s) 1692, 1861
BseNI ACTGG 4 cut(s) 148, 925, 1388, 1723
BseRI GAGGAG 2 cut(s) 896, 1661
BseXI GCAGC 5 cut(s) 491, 725, 1305, 1329, 1863
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 6 cut(s) 447, 568, 793, 1510, 1762, 1845
BshNI GGYRCC 1 cut(s) 1223
BshTI ACCGGT 1 cut(s) 407
BsiEI CGRYCG 1 cut(s) 37
BsiHKAI GWGCWC 1 cut(s) 1125
BsiHKCI CYCGRG 1 cut(s) 420
BsiSI CCGG 5 cut(s) 408, 586, 953, 1465, 1511
BslFI GGGAC 2 cut(s) 852, 1500
BslI CCNNNNNNNGG 4 cut(s) 189, 585, 1091, 1539
BsmAI GTCTC 3 cut(s) 160, 1464, 1916
BsmBI CGTCTC 1 cut(s) 160
BsmFI GGGAC 2 cut(s) 852, 1500
BsnI GGCC 6 cut(s) 447, 568, 793, 1510, 1762, 1845
BsoBI CYCGRG 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 1125
Bsp13I TCCGGA 1 cut(s) 1464
Bsp1407I TGTACA 1 cut(s) 1884
Bsp143I GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 3 cut(s) 835, 1492, 1506
BspANI GGCC 6 cut(s) 447, 568, 793, 1510, 1762, 1845
BspCNI CTCAG 2 cut(s) 1693, 1860
BspEI TCCGGA 1 cut(s) 1464
BspHI TCATGA 1 cut(s) 517
BspLI GGNNCC 4 cut(s) 885, 1134, 1225, 1543
BspPI GGATC 3 cut(s) 467, 611, 1514
BspQI GCTCTTC 1 cut(s) 1145
BspT104I TTCGAA 1 cut(s) 319
BspT107I GGYRCC 1 cut(s) 1223
BsrDI GCAATG 1 cut(s) 1527
BsrFI RCCGGY 1 cut(s) 407
BsrGI TGTACA 1 cut(s) 1884
BsrI ACTGG 4 cut(s) 148, 925, 1388, 1723
BssAI RCCGGY 1 cut(s) 407
BssECI CCNNGG 3 cut(s) 188, 727, 1689
BssMI GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
BssT1I CCWWGG 2 cut(s) 727, 1689
Bst2UI CCWGG 2 cut(s) 190, 383
Bst4CI ACNGT 2 cut(s) 347, 1137
Bst6I CTCTTC 2 cut(s) 1145, 1794
BstAUI TGTACA 1 cut(s) 1884
BstBI TTCGAA 1 cut(s) 319
BstC8I GCNNGC 2 cut(s) 1259, 1508
BstDEI CTNAG 3 cut(s) 201, 1701, 1847
BstEII GGTNACC 1 cut(s) 1784
BstF5I GGATG 4 cut(s) 868, 931, 961, 1843
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 9 cut(s) 25, 37, 180, 232, 462, 619, 753, 1522, 1586
BstMAI GTCTC 3 cut(s) 160, 1464, 1916
BstMBI GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 4 cut(s) 358, 479, 1851, 1857
BstNI CCWGG 2 cut(s) 190, 383
BstPI GGTNACC 1 cut(s) 1784
BstSCI CCNGG 2 cut(s) 188, 381
BstV1I GCAGC 5 cut(s) 491, 725, 1305, 1329, 1863
BstV2I GAAGAC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 1583
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 1 cut(s) 1583
BsuI GTATCC 1 cut(s) 389
BsuRI GGCC 6 cut(s) 447, 568, 793, 1510, 1762, 1845
BtsCI GGATG 4 cut(s) 868, 931, 961, 1843
BtsIMutI CAGTG 3 cut(s) 155, 1185, 1732
Cac8I GCNNGC 2 cut(s) 1259, 1508
CaiI CAGNNNCTG 2 cut(s) 485, 560
CciI TCATGA 1 cut(s) 517
CfoI GCGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 407
Cfr13I GGNCC 4 cut(s) 1082, 1175, 1508, 1542
CseI GACGC 1 cut(s) 142
Csp6I GTAC 6 cut(s) 732, 756, 1224, 1375, 1612, 1885
CspAI ACCGGT 1 cut(s) 407
CviAII CATG 6 cut(s) 220, 353, 518, 570, 1559, 1920
CviQI GTAC 6 cut(s) 732, 756, 1224, 1375, 1612, 1885
DdeI CTNAG 3 cut(s) 201, 1701, 1847
DpnI GATC 9 cut(s) 24, 36, 179, 231, 461, 618, 752, 1521, 1585
DpnII GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
EaeI YGGCCR 2 cut(s) 566, 791
Eam1104I CTCTTC 2 cut(s) 1145, 1794
EarI CTCTTC 2 cut(s) 1145, 1794
Ecl136II GAGCTC 1 cut(s) 1123
Eco130I CCWWGG 2 cut(s) 727, 1689
Eco147I AGGCCT 1 cut(s) 1845
Eco24I GRGCYC 1 cut(s) 1125
Eco47I GGWCC 3 cut(s) 1082, 1175, 1542
Eco53kI GAGCTC 1 cut(s) 1123
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 420
Eco91I GGTNACC 1 cut(s) 1784
EcoICRI GAGCTC 1 cut(s) 1123
EcoO65I GGTNACC 1 cut(s) 1784
EcoRI GAATTC 1 cut(s) 386
EcoRII CCWGG 2 cut(s) 188, 381
EcoT14I CCWWGG 2 cut(s) 727, 1689
EcoT38I GRGCYC 1 cut(s) 1125
ErhI CCWWGG 2 cut(s) 727, 1689
Esp3I CGTCTC 1 cut(s) 160
FaeI CATG 6 cut(s) 223, 356, 521, 573, 1562, 1923
FaqI GGGAC 2 cut(s) 852, 1500
FatI CATG 6 cut(s) 219, 352, 517, 569, 1558, 1919
FauI CCCGC 2 cut(s) 828, 1499
FauNDI CATATG 1 cut(s) 1051
FbaI TGATCA 1 cut(s) 177
Fnu4HI GCNGC 5 cut(s) 480, 714, 1294, 1318, 1852
FokI GGATG 4 cut(s) 875, 938, 968, 1850
FriOI GRGCYC 1 cut(s) 1125
Fsp4HI GCNGC 5 cut(s) 480, 714, 1294, 1318, 1852
FspBI CTAG 4 cut(s) 240, 375, 470, 1641
FspI TGCGCA 1 cut(s) 224
GlaI GCGC 1 cut(s) 224
GluI GCNGC 5 cut(s) 480, 714, 1294, 1318, 1852
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 6 cut(s) 447, 568, 793, 1510, 1762, 1845
HapII CCGG 5 cut(s) 408, 586, 953, 1465, 1511
HgaI GACGC 1 cut(s) 142
HhaI GCGC 1 cut(s) 225
Hin1II CATG 6 cut(s) 223, 356, 521, 573, 1562, 1923
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HincII GTYRAC 3 cut(s) 343, 1040, 1408
HindII GTYRAC 3 cut(s) 343, 1040, 1408
HindIII AAGCTT 2 cut(s) 527, 1232
HpaII CCGG 5 cut(s) 408, 586, 953, 1465, 1511
HphI GGTGA 5 cut(s) 172, 500, 505, 1075, 1689
Hpy166II GTNNAC 3 cut(s) 343, 1040, 1408
Hpy8I GTNNAC 3 cut(s) 343, 1040, 1408
Hpy99I CGWCG 2 cut(s) 881, 1160
HpyAV CCTTC 5 cut(s) 35, 560, 997, 1389, 1835
HpyCH4III ACNGT 2 cut(s) 347, 1137
HpyCH4IV ACGT 2 cut(s) 65, 256
HpyCH4V TGCA 5 cut(s) 352, 504, 811, 1715, 1880
HpyF10VI GCNNNNNNNGC 4 cut(s) 358, 479, 1851, 1857
HpyF3I CTNAG 3 cut(s) 201, 1701, 1847
HpySE526I ACGT 2 cut(s) 65, 256
Hsp92II CATG 6 cut(s) 223, 356, 521, 573, 1562, 1923
HspAI GCGC 1 cut(s) 223
Kpn2I TCCGGA 1 cut(s) 1464
KpnI GGTACC 1 cut(s) 1227
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
LguI GCTCTTC 1 cut(s) 1145
LmnI GCTCC 3 cut(s) 667, 883, 1128
Lsp1109I GCAGC 5 cut(s) 491, 725, 1305, 1329, 1863
LweI GCATC 1 cut(s) 798
MaeI CTAG 4 cut(s) 240, 375, 470, 1641
MaeII ACGT 2 cut(s) 65, 256
MaeIII GTNAC 4 cut(s) 948, 1636, 1695, 1784
MalI GATC 9 cut(s) 24, 36, 179, 231, 461, 618, 752, 1521, 1585
MboI GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
MflI RGATCY 1 cut(s) 1583
MhlI GDGCHC 1 cut(s) 1125
MlsI TGGCCA 2 cut(s) 568, 793
MluNI TGGCCA 2 cut(s) 568, 793
MlyI GAGTC 5 cut(s) 270, 283, 412, 1001, 1262
MmeI TCCRAC 1 cut(s) 48
Mox20I TGGCCA 2 cut(s) 568, 793
MroI TCCGGA 1 cut(s) 1464
MroXI GAANNNNTTC 1 cut(s) 143
MscI TGGCCA 2 cut(s) 568, 793
MseI TTAA 6 cut(s) 627, 645, 690, 1236, 1470, 1626
MslI CAYNNNNRTG 3 cut(s) 453, 1550, 1596
Msp20I TGGCCA 2 cut(s) 568, 793
MspI CCGG 5 cut(s) 408, 586, 953, 1465, 1511
MspR9I CCNGG 2 cut(s) 190, 383
MvaI CCWGG 2 cut(s) 190, 383
MwoI GCNNNNNNNGC 4 cut(s) 358, 479, 1851, 1857
NdeI CATATG 1 cut(s) 1051
NdeII GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
NlaIII CATG 6 cut(s) 223, 356, 521, 573, 1562, 1923
NlaIV GGNNCC 4 cut(s) 885, 1134, 1225, 1543
NmuCI GTSAC 1 cut(s) 1695
NsbI TGCGCA 1 cut(s) 224
NspV TTCGAA 1 cut(s) 319
PagI TCATGA 1 cut(s) 517
PceI AGGCCT 1 cut(s) 1845
PciSI GCTCTTC 1 cut(s) 1145
PdmI GAANNNNTTC 1 cut(s) 143
PfeI GAWTC 7 cut(s) 144, 428, 557, 737, 761, 1722, 1737
PfoI TCCNGGA 1 cut(s) 381
PinAI ACCGGT 1 cut(s) 407
PkrI GCNGC 5 cut(s) 481, 715, 1295, 1319, 1853
Ple19I CGATCG 1 cut(s) 37
PleI GAGTC 5 cut(s) 269, 283, 412, 1001, 1262
PpsI GAGTC 5 cut(s) 269, 283, 412, 1001, 1262
PsiI TTATAA 4 cut(s) 437, 699, 1215, 1868
Psp124BI GAGCTC 1 cut(s) 1125
Psp6I CCWGG 2 cut(s) 188, 381
PspEI GGTNACC 1 cut(s) 1784
PspGI CCWGG 2 cut(s) 188, 381
PspN4I GGNNCC 4 cut(s) 885, 1134, 1225, 1543
PspPI GGNCC 4 cut(s) 1082, 1175, 1508, 1542
PstNI CAGNNNCTG 2 cut(s) 485, 560
PsuI RGATCY 1 cut(s) 1583
PvuI CGATCG 1 cut(s) 37
RsaI GTAC 6 cut(s) 733, 757, 1225, 1376, 1613, 1886
RsaNI GTAC 6 cut(s) 732, 756, 1224, 1375, 1612, 1885
RseI CAYNNNNRTG 3 cut(s) 453, 1550, 1596
SacI GAGCTC 1 cut(s) 1125
SapI GCTCTTC 1 cut(s) 1145
SaqAI TTAA 6 cut(s) 627, 645, 690, 1236, 1470, 1626
SatI GCNGC 5 cut(s) 480, 714, 1294, 1318, 1852
Sau3AI GATC 9 cut(s) 22, 34, 177, 229, 459, 616, 750, 1519, 1583
Sau96I GGNCC 4 cut(s) 1082, 1175, 1508, 1542
ScaI AGTACT 1 cut(s) 757
SchI GAGTC 5 cut(s) 270, 283, 412, 1001, 1262
ScrFI CCNGG 2 cut(s) 190, 383
SduI GDGCHC 1 cut(s) 1125
SfaNI GCATC 1 cut(s) 798
SfuI TTCGAA 1 cut(s) 319
SinI GGWCC 3 cut(s) 1082, 1175, 1542
SmiMI CAYNNNNRTG 3 cut(s) 453, 1550, 1596
SmlI CTYRAG 4 cut(s) 291, 474, 1815, 1855
SmoI CTYRAG 4 cut(s) 291, 474, 1815, 1855
SpeI ACTAGT 1 cut(s) 239
SseBI AGGCCT 1 cut(s) 1845
SsiI CCGC 3 cut(s) 835, 1492, 1506
SspMI CTAG 4 cut(s) 240, 375, 470, 1641
SstI GAGCTC 1 cut(s) 1125
StuI AGGCCT 1 cut(s) 1845
StyD4I CCNGG 2 cut(s) 188, 381
StyI CCWWGG 2 cut(s) 727, 1689
TaaI ACNGT 2 cut(s) 347, 1137
TaiI ACGT 2 cut(s) 68, 259
TaqI TCGA 4 cut(s) 37, 319, 1735, 1873
TatI WGTACW 2 cut(s) 755, 1884
TfiI GAWTC 7 cut(s) 144, 428, 557, 737, 761, 1722, 1737
Tru1I TTAA 6 cut(s) 627, 645, 690, 1236, 1470, 1626
Tru9I TTAA 6 cut(s) 627, 645, 690, 1236, 1470, 1626
TscAI CASTG 3 cut(s) 155, 1192, 1732
TseFI GTSAC 1 cut(s) 1695
TseI GCWGC 5 cut(s) 479, 713, 1293, 1317, 1851
Tsp45I GTSAC 1 cut(s) 1695
TspGWI ACGGA 2 cut(s) 387, 1736
TspRI CASTG 3 cut(s) 155, 1192, 1732
VpaK11BI GGWCC 3 cut(s) 1082, 1175, 1542
XapI RAATTY 5 cut(s) 386, 959, 1073, 1358, 1499
XcmI CCANNNNNNNNNTGG 1 cut(s) 561
XmnI GAANNNNTTC 1 cut(s) 143
XspI CTAG 4 cut(s) 240, 375, 470, 1641
ZrmI AGTACT 1 cut(s) 757
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.